Clone Sequence Records
BO17112.3prime Sequence
650 bp (650 high quality bases) assembled on 2006-10-13
> BO17112.3prime
ATGGTCTAGAAAGCTTGCGCCGGCCTTTTGGGTCTGTTTTTGGCGTTGAA
GTGCCTCAAAGGCTTCGATTTCCTTCTTTTCTTTGGCCTGATTGCGACGC
TCATATTCCAGTCGGTGCGAGATGATGCGCTCCACGATGCGCTCCGTGGT
CATCTCGTTGCCGGAATCGATCAGCTCAAAGATGGCTCGCGTCTTGGGAA
CGGCATATGGATCGATCTTGCCATTCTCAAGCGCAATGGGTGTGCGTCCA
TGACAGACAACATCGATTTTGAAGTGCTCAAGCAGCTCTTCAGTGACACA
GTAGGGAGCTCCGATTACTACCTCATTGACAAACTTGCAGGCCAAAACAC
TGAGCACGCGCTCGTGCAGATTCATAATGGGATAGTTGCTGCCCTTGTAG
GAGTTCACCACGGGATCTGTGTGCAGGCCAACAATCAGATAGTCACCCAG
TTTCTTAGCCTTTTCCAGAAAGTCCAGGTGACCCACATGGAAGAGATCGA
AGGCGCCAGCCACATAAACAATCTTATCGCCGGGATTCGGTGACTTTCCA
TCACTGAACTGTATGATCTTTTGGGTAGTCGGCAAGAACTGACTACAACC
GGTCCACGGACTTTTGGCTGCCGAATCTTGACCCATGTCGACTGATAACT
BO17112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5547-PB | 1182 | Pect-RB | 560..1179 | 638..19 | 3100 | 100 | Minus |
CG5547-PD | 1146 | Pect-RD | 524..1143 | 638..19 | 3100 | 100 | Minus |
CG5547-PA | 621 | Pect-RA | 1..618 | 636..19 | 3090 | 100 | Minus |
CG5547-PC | 1125 | Pect-RC | 512..1122 | 629..19 | 3055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-RD | 2174 | CG5547-RD | 952..1571 | 638..19 | 3100 | 100 | Minus |
Pect-RB | 2210 | CG5547-RB | 988..1607 | 638..19 | 3100 | 100 | Minus |
Pect-RC | 2153 | CG5547-RC | 940..1550 | 629..19 | 3055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13209909..13210225 | 335..19 | 1585 | 100 | Minus |
2L | 23513712 | 2L | 13209660..13209845 | 519..334 | 930 | 100 | Minus |
2L | 23513712 | 2L | 13209481..13209601 | 638..518 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:18:41 has no hits.
BO17112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:40 Download gff for
BO17112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5547-PD | 513..1146 | 18..650 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:01:53 Download gff for
BO17112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 977..1611 | 13..650 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:10 Download gff for
BO17112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 977..1611 | 13..650 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:10 Download gff for
BO17112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13209470..13209599 | 520..650 | 96 | -> | Minus |
2L | 13209660..13209845 | 334..519 | 100 | -> | Minus |
2L | 13209911..13210229 | 13..333 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:01:53 Download gff for
BO17112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13209470..13209599 | 520..650 | 96 | -> | Minus |
arm_2L | 13209660..13209845 | 334..519 | 100 | -> | Minus |
arm_2L | 13209911..13210229 | 13..333 | 99 | | Minus |
BO17112.5prime Sequence
650 bp (578 high quality bases) assembled on 2006-10-13
> BO17112.5prime
GAAGTTATCAGTCGACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGA
CCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGT
GATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGC
CTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGA
AACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAAC
TCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCT
CAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCT
ACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGT
CATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATGC
CGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGA
TGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATAT
GAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGC
ACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCGCAAGCTTTCTAGACC
BO17112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5547-PB | 1182 | Pect-RB | 560..1179 | 15..634 | 3100 | 100 | Plus |
CG5547-PD | 1146 | Pect-RD | 524..1143 | 15..634 | 3100 | 100 | Plus |
CG5547-PA | 621 | Pect-RA | 1..618 | 17..634 | 3090 | 100 | Plus |
CG5547-PC | 1125 | Pect-RC | 512..1122 | 24..634 | 3055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-RD | 2174 | CG5547-RD | 952..1571 | 15..634 | 3100 | 100 | Plus |
Pect-RB | 2210 | CG5547-RB | 988..1607 | 15..634 | 3100 | 100 | Plus |
Pect-RC | 2153 | CG5547-RC | 940..1550 | 24..634 | 3055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13209909..13210225 | 318..634 | 1585 | 100 | Plus |
2L | 23513712 | 2L | 13209660..13209845 | 134..319 | 930 | 100 | Plus |
2L | 23513712 | 2L | 13209481..13209601 | 15..135 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:37:32 has no hits.
BO17112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:40 Download gff for
BO17112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5547-PD | 511..1146 | 1..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:07:44 Download gff for
BO17112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 977..1611 | 3..640 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:15:24 Download gff for
BO17112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 977..1611 | 3..640 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:15:24 Download gff for
BO17112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13209470..13209599 | 3..133 | 96 | -> | Plus |
2L | 13209660..13209845 | 134..319 | 100 | -> | Plus |
2L | 13209911..13210229 | 320..640 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:07:44 Download gff for
BO17112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13209660..13209845 | 134..319 | 100 | -> | Plus |
arm_2L | 13209470..13209599 | 3..133 | 96 | -> | Plus |
arm_2L | 13209911..13210229 | 320..640 | 99 | | Plus |
BO17112.complete Sequence
652 bp assembled on 2007-10-17
GenBank Submission: FJ634030
> BO17112.complete
GAAGTTATCAGTCGACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGA
CCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGT
GATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGC
CTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGA
AACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAAC
TCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCT
CAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCT
ACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGT
CATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATGC
CGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGA
TGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATAT
GAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGC
ACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCGCAAGCTTTCTAGACC
AT
BO17112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-RD | 1146 | CG5547-PD | 524..1143 | 15..634 | 3100 | 100 | Plus |
Pect-RB | 1182 | CG5547-PB | 560..1179 | 15..634 | 3100 | 100 | Plus |
Pect-RC | 1125 | CG5547-PC | 512..1122 | 24..634 | 3055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-RD | 2174 | CG5547-RD | 952..1571 | 15..634 | 3100 | 100 | Plus |
Pect-RB | 2210 | CG5547-RB | 988..1607 | 15..634 | 3100 | 100 | Plus |
Pect-RC | 2153 | CG5547-RC | 940..1550 | 24..634 | 3055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13209909..13210225 | 318..634 | 1585 | 100 | Plus |
2L | 23513712 | 2L | 13209660..13209845 | 134..319 | 930 | 100 | Plus |
2L | 23513712 | 2L | 13209481..13209601 | 15..135 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:29:38 has no hits.
BO17112.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:23 Download gff for
BO17112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RD | 511..1146 | 1..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:01 Download gff for
BO17112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RA | 205..839 | 3..640 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:38 Download gff for
BO17112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 990..1607 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:52 Download gff for
BO17112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RA | 218..835 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:54 Download gff for
BO17112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pect-RB | 990..1607 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:54 Download gff for
BO17112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13209483..13209599 | 17..133 | 100 | -> | Plus |
2L | 13209660..13209845 | 134..319 | 100 | -> | Plus |
2L | 13209911..13210225 | 320..636 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:38 Download gff for
BO17112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13209660..13209845 | 134..319 | 100 | -> | Plus |
arm_2L | 13209483..13209599 | 17..133 | 100 | -> | Plus |
arm_2L | 13209911..13210225 | 320..636 | 99 | | Plus |
BO17112.pep Sequence
Translation from 16 to 652
> BO17112.pep
MGQDSAAKSPWTGCSQFLPTTQKIIQFSDGKSPNPGDKIVYVAGAFDLFH
VGHLDFLEKAKKLGDYLIVGLHTDPVVNSYKGSNYPIMNLHERVLSVLAC
KFVNEVVIGAPYCVTEELLEHFKIDVVCHGRTPIALENGKIDPYAVPKTR
AIFELIDSGNEMTTERIVERIISHRLEYERRNQAKEKKEIEAFEALQRQK
QTQKAGASFLDH
BO17112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pect-PD | 381 | CG5547-PD | 176..381 | 1..206 | 1077 | 100 | Plus |
Pect-PB | 393 | CG5547-PB | 188..393 | 1..206 | 1077 | 100 | Plus |
Pect-PC | 374 | CG5547-PC | 171..374 | 3..206 | 1063 | 99.5 | Plus |
Pect-PE | 371 | CG5547-PE | 169..371 | 4..206 | 1048 | 98.5 | Plus |
Cct2-PA | 381 | CG18330-PA | 81..225 | 40..185 | 210 | 37.8 | Plus |
Pect-PE | 371 | CG5547-PE | 20..172 | 37..192 | 209 | 33.3 | Plus |
Pect-PB | 393 | CG5547-PB | 20..178 | 37..199 | 207 | 33.1 | Plus |
Pect-PD | 381 | CG5547-PD | 20..171 | 37..191 | 205 | 32.9 | Plus |
Pect-PC | 374 | CG5547-PC | 20..171 | 37..191 | 205 | 32.9 | Plus |