Clone BO17112 Report

Search the DGRC for BO17112

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptPect-RA
Protein status:BO17112.pep: full length peptide match
Sequenced Size:652

Clone Sequence Records

BO17112.3prime Sequence

650 bp (650 high quality bases) assembled on 2006-10-13

> BO17112.3prime
ATGGTCTAGAAAGCTTGCGCCGGCCTTTTGGGTCTGTTTTTGGCGTTGAA
GTGCCTCAAAGGCTTCGATTTCCTTCTTTTCTTTGGCCTGATTGCGACGC
TCATATTCCAGTCGGTGCGAGATGATGCGCTCCACGATGCGCTCCGTGGT
CATCTCGTTGCCGGAATCGATCAGCTCAAAGATGGCTCGCGTCTTGGGAA
CGGCATATGGATCGATCTTGCCATTCTCAAGCGCAATGGGTGTGCGTCCA
TGACAGACAACATCGATTTTGAAGTGCTCAAGCAGCTCTTCAGTGACACA
GTAGGGAGCTCCGATTACTACCTCATTGACAAACTTGCAGGCCAAAACAC
TGAGCACGCGCTCGTGCAGATTCATAATGGGATAGTTGCTGCCCTTGTAG
GAGTTCACCACGGGATCTGTGTGCAGGCCAACAATCAGATAGTCACCCAG
TTTCTTAGCCTTTTCCAGAAAGTCCAGGTGACCCACATGGAAGAGATCGA
AGGCGCCAGCCACATAAACAATCTTATCGCCGGGATTCGGTGACTTTCCA
TCACTGAACTGTATGATCTTTTGGGTAGTCGGCAAGAACTGACTACAACC
GGTCCACGGACTTTTGGCTGCCGAATCTTGACCCATGTCGACTGATAACT

BO17112.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5547-PB 1182 Pect-RB 560..1179 638..19 3100 100 Minus
CG5547-PD 1146 Pect-RD 524..1143 638..19 3100 100 Minus
CG5547-PA 621 Pect-RA 1..618 636..19 3090 100 Minus
CG5547-PC 1125 Pect-RC 512..1122 629..19 3055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-RD 2174 CG5547-RD 952..1571 638..19 3100 100 Minus
Pect-RB 2210 CG5547-RB 988..1607 638..19 3100 100 Minus
Pect-RC 2153 CG5547-RC 940..1550 629..19 3055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13209909..13210225 335..19 1585 100 Minus
2L 23513712 2L 13209660..13209845 519..334 930 100 Minus
2L 23513712 2L 13209481..13209601 638..518 605 100 Minus
Blast to na_te.dros performed on 2015-02-05 01:18:41 has no hits.

BO17112.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:40 Download gff for BO17112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5547-PD 513..1146 18..650 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:01:53 Download gff for BO17112.3prime
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 977..1611 13..650 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:10 Download gff for BO17112.3prime
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 977..1611 13..650 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:10 Download gff for BO17112.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13209470..13209599 520..650 96 -> Minus
2L 13209660..13209845 334..519 100 -> Minus
2L 13209911..13210229 13..333 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:01:53 Download gff for BO17112.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13209470..13209599 520..650 96 -> Minus
arm_2L 13209660..13209845 334..519 100 -> Minus
arm_2L 13209911..13210229 13..333 99   Minus

BO17112.5prime Sequence

650 bp (578 high quality bases) assembled on 2006-10-13

> BO17112.5prime
GAAGTTATCAGTCGACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGA
CCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGT
GATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGC
CTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGA
AACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAAC
TCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCT
CAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCT
ACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGT
CATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATGC
CGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGA
TGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATAT
GAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGC
ACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCGCAAGCTTTCTAGACC

BO17112.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5547-PB 1182 Pect-RB 560..1179 15..634 3100 100 Plus
CG5547-PD 1146 Pect-RD 524..1143 15..634 3100 100 Plus
CG5547-PA 621 Pect-RA 1..618 17..634 3090 100 Plus
CG5547-PC 1125 Pect-RC 512..1122 24..634 3055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-RD 2174 CG5547-RD 952..1571 15..634 3100 100 Plus
Pect-RB 2210 CG5547-RB 988..1607 15..634 3100 100 Plus
Pect-RC 2153 CG5547-RC 940..1550 24..634 3055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13209909..13210225 318..634 1585 100 Plus
2L 23513712 2L 13209660..13209845 134..319 930 100 Plus
2L 23513712 2L 13209481..13209601 15..135 605 100 Plus
Blast to na_te.dros performed on 2015-02-12 07:37:32 has no hits.

BO17112.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:40 Download gff for BO17112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5547-PD 511..1146 1..635 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:07:44 Download gff for BO17112.5prime
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 977..1611 3..640 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:15:24 Download gff for BO17112.5prime
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 977..1611 3..640 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:15:24 Download gff for BO17112.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13209470..13209599 3..133 96 -> Plus
2L 13209660..13209845 134..319 100 -> Plus
2L 13209911..13210229 320..640 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:07:44 Download gff for BO17112.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13209660..13209845 134..319 100 -> Plus
arm_2L 13209470..13209599 3..133 96 -> Plus
arm_2L 13209911..13210229 320..640 99   Plus

BO17112.complete Sequence

652 bp assembled on 2007-10-17

GenBank Submission: FJ634030

> BO17112.complete
GAAGTTATCAGTCGACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGGA
CCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAGT
GATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCGC
CTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAGA
AACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAAC
TCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGCT
CAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCT
ACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTGT
CATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATGC
CGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAGA
TGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATAT
GAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGGC
ACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCGCAAGCTTTCTAGACC
AT

BO17112.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-RD 1146 CG5547-PD 524..1143 15..634 3100 100 Plus
Pect-RB 1182 CG5547-PB 560..1179 15..634 3100 100 Plus
Pect-RC 1125 CG5547-PC 512..1122 24..634 3055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-RD 2174 CG5547-RD 952..1571 15..634 3100 100 Plus
Pect-RB 2210 CG5547-RB 988..1607 15..634 3100 100 Plus
Pect-RC 2153 CG5547-RC 940..1550 24..634 3055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13209909..13210225 318..634 1585 100 Plus
2L 23513712 2L 13209660..13209845 134..319 930 100 Plus
2L 23513712 2L 13209481..13209601 15..135 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:29:38 has no hits.

BO17112.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:23 Download gff for BO17112.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RD 511..1146 1..635 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:01 Download gff for BO17112.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RA 205..839 3..640 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:38 Download gff for BO17112.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 990..1607 17..636 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:52 Download gff for BO17112.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RA 218..835 17..636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:54 Download gff for BO17112.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 990..1607 17..636 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:54 Download gff for BO17112.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13209483..13209599 17..133 100 -> Plus
2L 13209660..13209845 134..319 100 -> Plus
2L 13209911..13210225 320..636 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:38 Download gff for BO17112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13209660..13209845 134..319 100 -> Plus
arm_2L 13209483..13209599 17..133 100 -> Plus
arm_2L 13209911..13210225 320..636 99   Plus

BO17112.pep Sequence

Translation from 16 to 652

> BO17112.pep
MGQDSAAKSPWTGCSQFLPTTQKIIQFSDGKSPNPGDKIVYVAGAFDLFH
VGHLDFLEKAKKLGDYLIVGLHTDPVVNSYKGSNYPIMNLHERVLSVLAC
KFVNEVVIGAPYCVTEELLEHFKIDVVCHGRTPIALENGKIDPYAVPKTR
AIFELIDSGNEMTTERIVERIISHRLEYERRNQAKEKKEIEAFEALQRQK
QTQKAGASFLDH

BO17112.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-PD 381 CG5547-PD 176..381 1..206 1077 100 Plus
Pect-PB 393 CG5547-PB 188..393 1..206 1077 100 Plus
Pect-PC 374 CG5547-PC 171..374 3..206 1063 99.5 Plus
Pect-PE 371 CG5547-PE 169..371 4..206 1048 98.5 Plus
Cct2-PA 381 CG18330-PA 81..225 40..185 210 37.8 Plus
Pect-PE 371 CG5547-PE 20..172 37..192 209 33.3 Plus
Pect-PB 393 CG5547-PB 20..178 37..199 207 33.1 Plus
Pect-PD 381 CG5547-PD 20..171 37..191 205 32.9 Plus
Pect-PC 374 CG5547-PC 20..171 37..191 205 32.9 Plus