Clone Sequence Records
BO17120.5prime Sequence
713 bp (711 high quality bases) assembled on 2006-10-13
> BO17120.5prime
GAAGTTATCAGTCGACATGGACAAGCGCGTAACAGTCCTGCTGCCCAATG
GTCGGCGGCAGAATGTGAACGTGACGGCGAACATGACGCTGTTGGAGATT
CTGGAGACGGCCTGCTTCAAGCACGGCTACGATGCGGAGGAGCACTGCCT
CAAGTTTCACAACAAGGTGGTCGGATTGACGCAACAGTTCCGTTTTAGTG
GCCTGCCTAACAACTGTGTCCTGGAGATGGAGCAAACAGAAAAGCGGCGC
ACACTGAGTAACGTTCTTGTCTGCGTCCAATTGAACGACGGTTCCCGCCA
GCAAGGGGACTTCTCGCCCAACGACACCATATGGCTGGTGGTCGAGAAGC
TTTGCGAAACACATGTAAAGGCTTACGAAAGCCCCGTCATCATCTACATG
CGCAGCGAGGTCATAGGACATGAGCAGATGCGACAGACCACTCTTAAGTC
CCTAGGAATCCTCGAGGGTCGTGCCATGATGCGTCTTATCGACAAAAAAC
CCGAGGACCTTAAGACCCAGGCAAATGTGTATAAAGCTCCCGCTGTCAAG
CCTCGGGTGGACAATGACGACCAGCCCAGTACCTCCCGCTCTGCAATGGC
AGCTGGTGGCAGCGGAGGAGGAGGTGGATTTGCTCTTACCAGCAACATGA
TCAAGAATTTGAAACGCACGGCTCCTGAAGAAAAGGCCAGCGGTAGCGAA
CCAGCCAAGCCCT
BO17120.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-PC | 1437 | CG33722-RC | 1..697 | 17..713 | 3485 | 100 | Plus |
| CG33722-PB | 1437 | CG33722-RB | 1..697 | 17..713 | 3485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-RE | 3544 | CG33722-RE | 104..800 | 17..713 | 3485 | 100 | Plus |
| CG33722-RD | 1585 | CG33722-RD | 104..800 | 17..713 | 3485 | 100 | Plus |
| CG33722-RB | 1547 | CG33722-RB | 66..762 | 17..713 | 3485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8244213..8244909 | 17..713 | 3485 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 669..714 | 644..598 | 115 | 74.5 | Minus |
BO17120.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:50 Download gff for
BO17120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-PB | 1..697 | 17..713 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:09 Download gff for
BO17120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RC | 97..800 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:14 Download gff for
BO17120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 59..762 | 9..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:14 Download gff for
BO17120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8244206..8244909 | 9..713 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:09 Download gff for
BO17120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4069928..4070631 | 9..713 | 99 | | Plus |
BO17120.3prime Sequence
875 bp (710 high quality bases) assembled on 2006-10-13
> BO17120.3prime
ATGGTCTAGAAAGCTTGCACTAGACCCTGAGGCCGTTGCACGGGTAAGGC
GGTACTTTTGCACTGCGTAGTGCGCTCCCTCCTCGGAGGTCAACTGATCC
ACGTACTCCTCCTTCACGAATCGATTGCTCACCGCATTGAGCGAGTCCTT
GATAAAGCCAAAATGCACGATGGCATTTGGAACAAAATTCAGCTCCAGGA
GCGTCTCACCGGAGGGCAGCACCTTCTTCGGTGGAATGGTGAAGAGATGG
AATTGCTCACCTGGCTGAACCAAAAACTCCCGAACAAAATCCTCCACCTT
GGAAAGGGGCTCGTGCGGCTTAAACATGCCCTGGAGCACGAAGCGATCGG
GAAACTGAATGCGCAGCACACAGTCCTTGTACTGGTTAAGCTTAGCCAGC
ATGGCCTTTTGGCGCTCCAATTCCCTTAGCTTTGCTGTCAGCAAGGGAGC
GTCGTCATCTCCGCTCGACGTACGCTTTAAATCACGGAGTACCATCTTCA
AATCGTTGACGGTCAAGTCGAAAAATGAGTCCGGCAGGTCATTCGCATTT
TTCTTGGATTCGTCCAAGGAAAAGAGTACAGCCTGGCGTGGCCCAATTAT
TTTCACCACTGGTGGAGCCCTGCCTGGATTCTCTTCGACTTCGTTTTCTG
CCTGCTTCTGCTCGGGAGGGTGGTTCATTAAGTATCCGGAACCATTGCCC
CAGTCATATTTAGGTGGTTCTGGCTGAGGCTGCTGCTCTTGATTGGATTC
CCCTAAGGGCTTGGCTGGTTCGCTACCGCTGGCCTTTTCTTCANGAGCCG
TGCGTTTTCAATCTTGATCATGTTGCTGGTAAGAGCAAATCCACCTCCTC
CTCCGCTGCCACCAGCTGCCATTGC
BO17120.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-PC | 1437 | CG33722-RC | 646..1434 | 807..19 | 3926 | 99.8 | Minus |
| CG33722-PB | 1437 | CG33722-RB | 646..1434 | 807..19 | 3926 | 99.8 | Minus |
| CG33722-PC | 1437 | CG33722-RC | 577..640 | 875..812 | 320 | 100 | Minus |
| CG33722-PB | 1437 | CG33722-RB | 577..640 | 875..812 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-RE | 3544 | CG33722-RE | 680..1537 | 875..19 | 4224 | 99.5 | Minus |
| CG33722-RD | 1585 | CG33722-RD | 680..1537 | 875..19 | 4224 | 99.5 | Minus |
| CG33722-RB | 1547 | CG33722-RB | 642..1499 | 875..19 | 4224 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8244789..8245646 | 875..19 | 4199 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-08 12:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 669..714 | 824..870 | 115 | 74.5 | Plus |
BO17120.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:49 Download gff for
BO17120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-PB | 577..1437 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:04 Download gff for
BO17120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RC | 680..1540 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:49 Download gff for
BO17120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 642..1502 | 15..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:49 Download gff for
BO17120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8244789..8245649 | 15..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:04 Download gff for
BO17120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4070511..4071371 | 15..875 | 99 | | Minus |
BO17120.complete Sequence
1468 bp assembled on 2006-10-11
GenBank Submission: FJ634033
> BO17120.complete
GAAGTTATCAGTCGACATGGACAAGCGCGTAACAGTCCTGCTGCCCAATG
GTCGGCGGCAGAATGTGAACGTGACGGCGAACATGACGCTGTTGGAGATT
CTGGAGACGGCCTGCTTCAAGCACGGCTACGATGCGGAGGAGCACTGCCT
CAAGTTTCACAACAAGGTGGTCGGATTGACGCAACAGTTCCGTTTTAGTG
GCCTGCCTAACAACTGTGTCCTGGAGATGGAGCAAACAGAAAAGCGGCGC
ACACTGAGTAACGTTCTTGTCTGCGTCCAATTGAACGACGGTTCCCGCCA
GCAAGGGGACTTCTCGCCCAACGACACCATATGGCTGGTGGTCGAGAAGC
TTTGCGAAACACATGTAAAGGCTTACGAAAGCCCCGTCATCATCTACATG
CGCAGCGAGGTCATAGGACATGAGCAGATGCGACAGACCACTCTTAAGTC
CCTAGGAATCCTCGAGGGTCGTGCCATGATGCGTCTTATCGACAAAAAAC
CCGAGGACCTTAAGACCCAGGCAAATGTGTATAAAGCTCCCGCTGTCAAG
CCTCGGGTGGACAATGACGACCAGCCCAGTACCTCCCGCTCTGCAATGGC
AGCTGGTGGCAGCGGAGGAGGAGGTGGATTTGCTCTTACCAGCAACATGA
TCAAGAATTTGAAACGCACGGCTCCTGAAGAAAAGGCCAGCGGTAGCGAA
CCAGCCAAGCCCTTAGGGGAATCCAATCAAGAGCAGCAGCCTCAGCCAGA
ACCACCTAAATATGACTGGGGCAATGGTTCCGGATACTTAATGAACCACC
CTCCCGAGCAGAAGCAGGCAGAAAACGAAGTCGAAGAGAATCCAGGCAGG
GCTCCACCAGTGGTGAAAATAATTGGGCCACGCCAGGCTGTACTCTTTTC
CTTGGACGAATCCAAGAAAAATGCGAATGACCTGCCGGACTCATTTTTCG
ACTTGACCGTCAACGATTTGAAGATGGTACTCCGTGATTTAAAGCGTACG
TCGAGCGGAGATGACGACGCTCCCTTGCTGACAGCAAAGCTAAGGGAATT
GGAGCGCCAAAAGGCCATGCTGGCTAAGCTTAACCAGTACAAGGACTGTG
TGCTGCGCATTCAGTTTCCCGATCGCTTCGTGCTCCAGGGCATGTTTAAG
CCGCACGAGCCCCTTTCCAAGGTGGAGGATTTTGTTCGGGAGTTTTTGGT
TCAGCCAGGTGAGCAATTCCATCTCTTCACCATTCCACCGAAGAAGGTGC
TGCCCTCCGGTGAGACGCTCCTGGAGCTGAATTTTGTTCCAAATGCCATC
GTGCATTTTGGCTTTATCAAGGACTCGCTCAATGCGGTGAGCAATCGATT
CGTGAAGGAGGAGTACGTGGATCAGTTGACCTCCGAGGAGGGAGCGCACT
ACGCAGTGCAAAAGTACCGCCTTACCCGTGCAACGGCCTCAGGGTCTAGT
GCAAGCTTTCTAGACCAT
BO17120.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-RE | 1437 | CG33722-PE | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| CG33722-RD | 1437 | CG33722-PD | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| CG33722-RB | 1437 | CG33722-PB | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-RE | 3544 | CG33722-RE | 104..1537 | 17..1450 | 7170 | 100 | Plus |
| CG33722-RD | 1585 | CG33722-RD | 104..1537 | 17..1450 | 7170 | 100 | Plus |
| CG33722-RB | 1547 | CG33722-RB | 66..1499 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8244213..8245646 | 17..1450 | 7170 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:18:59 has no hits.
BO17120.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:05 Download gff for
BO17120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 1..1437 | 17..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:30 Download gff for
BO17120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 59..1502 | 9..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:21 Download gff for
BO17120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RC | 104..1537 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:06 Download gff for
BO17120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 59..1502 | 9..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:40 Download gff for
BO17120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33722-RB | 66..1499 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:40 Download gff for
BO17120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8244213..8245646 | 17..1452 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:21 Download gff for
BO17120.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4069935..4071368 | 17..1452 | 99 | | Plus |
BO17120.pep Sequence
Translation from 16 to 1468
> BO17120.pep
MDKRVTVLLPNGRRQNVNVTANMTLLEILETACFKHGYDAEEHCLKFHNK
VVGLTQQFRFSGLPNNCVLEMEQTEKRRTLSNVLVCVQLNDGSRQQGDFS
PNDTIWLVVEKLCETHVKAYESPVIIYMRSEVIGHEQMRQTTLKSLGILE
GRAMMRLIDKKPEDLKTQANVYKAPAVKPRVDNDDQPSTSRSAMAAGGSG
GGGGFALTSNMIKNLKRTAPEEKASGSEPAKPLGESNQEQQPQPEPPKYD
WGNGSGYLMNHPPEQKQAENEVEENPGRAPPVVKIIGPRQAVLFSLDESK
KNANDLPDSFFDLTVNDLKMVLRDLKRTSSGDDDAPLLTAKLRELERQKA
MLAKLNQYKDCVLRIQFPDRFVLQGMFKPHEPLSKVEDFVREFLVQPGEQ
FHLFTIPPKKVLPSGETLLELNFVPNAIVHFGFIKDSLNAVSNRFVKEEY
VDQLTSEEGAHYAVQKYRLTRATASGSSASFLDH
BO17120.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33722-PE | 478 | CG33722-PE | 1..478 | 1..478 | 2484 | 100 | Plus |
| CG33722-PD | 478 | CG33722-PD | 1..478 | 1..478 | 2484 | 100 | Plus |
| CG33722-PB | 478 | CG33722-PB | 1..478 | 1..478 | 2484 | 100 | Plus |
| CG33722-PC | 478 | CG33722-PC | 1..478 | 1..478 | 2484 | 100 | Plus |
