Clone Sequence Records
BO17122.3prime Sequence
811 bp (810 high quality bases) assembled on 2006-10-13
> BO17122.3prime
ATGGTCTAGAAAGCTTGCCAACTTGAGCTTGATGTTGTCCGTAGTCCATC
GCTTGCTCTGGAGGCTTTTCAGCGCATTCTCGCAGTAGAACTGCTCCTCG
GATCGCTCGGGCAGGGTGTCCTTGAGCTGCTGTAGCTCCTGCTGCTGCTT
CAACCCGGCCATGGCATCTATGACCGCCTTGATGCACTTCACCCGCTGGG
CTAGCGCCAGTTTCTCAACGCTGTTGCCCATCTTGGAGAGGAATAGCTGA
AGGACGGTCGAGGGAGCCTGCAGCTCGTACAGCCGGAGCACGGCCAGCGT
CAGATCGAAGCTGATGTGAAACTGTTTGGTCTTCAGCGGATGCCAACTGG
GCACCCGCTCAAATATGCACTCCAGATCCGCATAAGCCTGTGCCTGCGCC
CTTTCATTGAGCGCCGTCCACTCGTACTGGGCCGGCGATATTTGCTGGTC
GGCGGCAAAACGCTGAGGTGACACTGGTTTGAGCATATCCTGCTCTTTCC
AATTGCTGTTCACCTGGCAGCAAGCATAGAGCACTTCCACTGGAGTGGGT
TGATCCCGAAGCAGCTTGCCGAGCGCGCTATCCTTCTCCATTAGCTGCTG
CATCTTGAGGGCAGCGTGAAAAACCTGCTCGTAGAGAGGTATTACACCCA
CTCCCGCTGTGGCATAGGCATCCACCAAAAGCTGGAGGTGTTTCTTCCTG
GTGCTCGTATCTCCGGAAGCGAGCGCTGCCTGAAACTGCTTAAGAGCCGC
CTCCTGGTGGCGTCCAAATAGCTGCAGTAGCTCAATATGGCCCGCCAGGT
CGCCACTTTCC
BO17122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18112-PA | 1344 | Vps16B-RA | 549..1341 | 811..19 | 3965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-RA | 1531 | CG18112-RA | 594..1386 | 811..19 | 3965 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29815066..29815858 | 19..811 | 3965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:00:44 has no hits.
BO17122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:51 Download gff for
BO17122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18112-PA | 549..1344 | 15..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:36 Download gff for
BO17122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 594..1393 | 11..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:40 Download gff for
BO17122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 594..1393 | 11..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:40 Download gff for
BO17122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29815059..29815858 | 11..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:36 Download gff for
BO17122.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25640781..25641580 | 11..811 | 99 | | Plus |
BO17122.5prime Sequence
804 bp (674 high quality bases) assembled on 2006-10-13
> BO17122.5prime
GAAGTTATCAGTCGACATGGACCTGCAATTGGACAGCGAAAGCTATTGGA
ACCGATCCTCTCGCGCAGCGTTCAGCTTCGACGACGAAGACGAGGTGGAC
CTCGCCCCGGATCTGGTCAGCAATGGCATCCTCGCCGACGACACCATTTC
GGAGGCCAGCTTCAATAACAGTGTCGCCCTGAATCTCTCGATCAAATCCA
TTCTGAGCGAGGAGGCATTGAAACTGGTGCTGCAGGAACAGGCGCTGGAC
GACAGGGTCCTGCCCAAGGGTGTCTCGCCGGAGGAGGAGCTGAAGCTGCT
GCGCCGACAGCTTCAGAGCACCCTGTACAGCCCCAATCTAGAAGCCACTG
CACAGAAGCTGCTGCAAGGAAAGACTGCGCCCTTGGAGATGTTCAAGTCG
CTGCATGAGAAGCAGCAGCTGCTGGACACCCTGATGGCACAAGGTGGTGG
GCATGCCGTCATTACAGTGTTGCTCTTCCTCAAGAGAACTCTGAATACCA
CGCAGTTTCATGGCATTCTGAGGGAGAGACCCAAGGCCTTGGAGCAGTAT
CTGAGTTACCTGAAGGAAAGTGGCGACCTGGCGGGCCATATTGAGCTACT
GCAGCTATTTGGACGCCACCAGGAGGCGGCTCTTAAGCAGTTTCAGGCAG
CGCTCGCTTCCGGAGATACGAGCACCAGGAAGAAACACCTCCAGCTTTTG
GTGGATGCCTATGCCACAGCGGGAGTGGGTGTAATACCTCTCTACGAGCA
GGTTTTTCACGCTGCCCCTCAGATGCAGCAGCTAATGGAGAAAGATAGCG
CGCT
BO17122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18112-PA | 1344 | Vps16B-RA | 1..751 | 17..767 | 3755 | 100 | Plus |
| CG18112-PA | 1344 | Vps16B-RA | 755..788 | 771..804 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-RA | 1531 | CG18112-RA | 46..833 | 17..804 | 3880 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29815619..29816406 | 804..17 | 3880 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:00:47 has no hits.
BO17122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:51 Download gff for
BO17122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18112-PA | 1..788 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:52:59 Download gff for
BO17122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 46..833 | 17..804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:32 Download gff for
BO17122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 46..833 | 17..804 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:32 Download gff for
BO17122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29815619..29816400 | 23..804 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:52:59 Download gff for
BO17122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25641341..25642122 | 23..804 | 99 | -> | Minus |
BO17122.complete Sequence
1375 bp assembled on 2006-10-11
GenBank Submission: FJ634034
> BO17122.complete
GAAGTTATCAGTCGACATGGACCTGCAATTGGACAGCGAAAGCTATTGGA
ACCGATCCTCTCGCGCAGCGTTCAGCTTCGACGACGAAGACGAGGTGGAC
CTCGCCCCGGATCTGGTCAGCAATGGCATCCTCGCCGACGACACCATTTC
GGAGGCCAGCTTCAATAACAGTGTCGCCCTGAATCTCTCGATCAAATCCA
TTCTGAGCGAGGAGGCATTGAAACTGGTGCTGCAGGAACAGGCGCTGGAC
GACAGGGTCCTGCCCAAGGGTGTCTCGCCGGAGGAGGAGCTGAAGCTGCT
GCGCCGACAGCTTCAGAGCACCCTGTACAGCCCCAATCTAGAAGCCACTG
CACAGAAGCTGCTGCAAGGAAAGACTGCGCCCTTGGAGATGTTCAAGTCG
CTGCATGAGAAGCAGCAGCTGCTGGACACCCTGATGGCACAAGGTGGTGG
GCATGCCGTCATTACAGTGTTGCTCTTCCTCAAGAGAACTCTGAATACCA
CGCAGTTTCATGGCATTCTGAGGGAGAGACCCAAGGCCTTGGAGCAGTAT
CTGAGTTACCTGAAGGAAAGTGGCGACCTGGCGGGCCATATTGAGCTACT
GCAGCTATTTGGACGCCACCAGGAGGCGGCTCTTAAGCAGTTTCAGGCAG
CGCTCGCTTCCGGAGATACGAGCACCAGGAAGAAACACCTCCAGCTTTTG
GTGGATGCCTATGCCACAGCGGGAGTGGGTGTAATACCTCTCTACGAGCA
GGTTTTTCACGCTGCCCTCAAGATGCAGCAGCTAATGGAGAAGGATAGCG
CGCTCGGCAAGCTGCTTCGGGATCAACCCACTCCAGTGGAAGTGCTCTAT
GCTTGCTGCCAGGTGAACAGCAATTGGAAAGAGCAGGATATGCTCAAACC
AGTGTCACCTCAGCGTTTTGCCGCCGACCAGCAAATATCGCCGGCCCAGT
ACGAGTGGACGGCGCTCAATGAAAGGGCGCAGGCACAGGCTTATGCGGAT
CTGGAGTGCATATTTGAGCGGGTGCCCAGTTGGCATCCGCTGAAGACCAA
ACAGTTTCACATCAGCTTCGATCTGACGCTGGCCGTGCTCCGGCTGTACG
AGCTGCAGGCTCCCTCGACCGTCCTTCAGCTATTCCTCTCCAAGATGGGC
AACAGCGTTGAGAAACTGGCGCTAGCCCAGCGGGTGAAGTGCATCAAGGC
GGTCATAGATGCCATGGCCGGGTTGAAGCAGCAGCAGGAGCTACAGCAGC
TCAAGGACACCCTGCCCGAGCGATCCGAGGAGCAGTTCTACTGCGAGAAT
GCGCTGAAAAGCCTCCAGAGCAAGCGATGGACTACGGACAACATCAAGCT
CAAGTTGGCAAGCTTTCTAGACCAT
BO17122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-RA | 1344 | CG18112-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-RA | 1531 | CG18112-RA | 46..1386 | 17..1357 | 6705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:48:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29815066..29816406 | 1357..17 | 6705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:48:06 has no hits.
BO17122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:08 Download gff for
BO17122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 1..1344 | 17..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:33 Download gff for
BO17122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 45..1392 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:43 Download gff for
BO17122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 46..1386 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:09 Download gff for
BO17122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 45..1392 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:40 Download gff for
BO17122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16B-RA | 46..1386 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:40 Download gff for
BO17122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29815064..29816406 | 17..1359 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:43 Download gff for
BO17122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25640786..25642128 | 17..1359 | 99 | | Minus |
BO17122.pep Sequence
Translation from 16 to 1375
> BO17122.pep
MDLQLDSESYWNRSSRAAFSFDDEDEVDLAPDLVSNGILADDTISEASFN
NSVALNLSIKSILSEEALKLVLQEQALDDRVLPKGVSPEEELKLLRRQLQ
STLYSPNLEATAQKLLQGKTAPLEMFKSLHEKQQLLDTLMAQGGGHAVIT
VLLFLKRTLNTTQFHGILRERPKALEQYLSYLKESGDLAGHIELLQLFGR
HQEAALKQFQAALASGDTSTRKKHLQLLVDAYATAGVGVIPLYEQVFHAA
LKMQQLMEKDSALGKLLRDQPTPVEVLYACCQVNSNWKEQDMLKPVSPQR
FAADQQISPAQYEWTALNERAQAQAYADLECIFERVPSWHPLKTKQFHIS
FDLTLAVLRLYELQAPSTVLQLFLSKMGNSVEKLALAQRVKCIKAVIDAM
AGLKQQQELQQLKDTLPERSEEQFYCENALKSLQSKRWTTDNIKLKLASF
LDH
BO17122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16B-PA | 447 | CG18112-PA | 1..447 | 1..447 | 2251 | 100 | Plus |
