Clone BO17123 Report

Search the DGRC for BO17123

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG3907-RA
Protein status:BO17123.pep: validated full length
Sequenced Size:1234

Clone Sequence Records

BO17123.3prime Sequence

825 bp (681 high quality bases) assembled on 2006-10-13

> BO17123.3prime
ATGGTCTAGAAAGCTTGCCAGCTTCAAGGATTCCTGAAGCTTCACTGTAG
CATTTGCAGACGGCTTTATGACTTCCTGCTTGACGGCAATCGCTTCGGGC
TTGGGGACTACGGATCCGTCTTCGCTGCTGGGTGCTTTAATATTGCCCAT
GCTCTGAATGCAAAAGTTCTTTAGCTGATCCACGGAAGCGGCCAGCATAT
TGTTCTTGTTGTTTGCCAGCGTTATCTCTTTCTCAATTCTCTCCAAAGAT
TCATCGAAACTGGTCACTTTCTGTTTATATTCCGGCCAGCTGTTACTTAT
TGTGGCCACATGGGACGTAATGTTTTCAGATCGATCCAGCAGGTCGTCTA
TTTTCGTCTTGTGCAGAGATATTTCCTCGCTGAGGATTTTCGTTGTTTGA
CTTAGGGTATTATTCACATTCTTCAGATCGTTGGCCAGTAGTTTAAATGA
ATTAAAAGTGGTTTTGTTCAGCGCAGCAATATCATCCGATAAGTTTGCGG
GTAAAGCGTTAGCCTGAATCGTGGGTAGCTGTGAGAGATTGAGCTTTAAG
GCTTCCGTTTCGGCCTGCAGTGTTTTCTGCACCTCGGTGTACTTATTGTA
GTGCTCCTTGATGGCCTCTATGTCGGTGGCGACGGCTTCTATCTTGGCCC
CGAAATCAGCCACCAACTTCTCGTCCTTGCCGTGGTTTCTTTGCGCTGCC
ACGGCCGCCTCCAGGTTGCTAAAGTTGTTCCGCAGGCTCTCCATTGATTT
TTGCAAATCATTTATTTCCGAAATGACGGCTGTTTTGGTCTTCAGCAGGT
AGGACGAAGTCTCGTGCCATCTTTG

BO17123.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-PB 1203 CG3907-RB 394..1200 825..19 3985 99.7 Minus
CG3907-PA 1203 CG3907-RA 394..1200 825..19 3985 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-RA 1701 CG3907-RA 552..1358 825..19 4005 99.8 Minus
CG3907-RB 1739 CG3907-RB 590..1396 825..19 4005 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24021003..24021284 544..825 1380 99.3 Plus
2R 25286936 2R 24020755..24020942 358..545 940 100 Plus
2R 25286936 2R 24020566..24020699 226..359 670 100 Plus
2R 25286936 2R 24020384..24020511 100..227 640 100 Plus
2R 25286936 2R 24020241..24020323 19..101 415 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:59:55 has no hits.

BO17123.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:52 Download gff for BO17123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3907-PA 394..1203 15..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:58 Download gff for BO17123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 590..1405 8..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:50 Download gff for BO17123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 590..1405 8..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:50 Download gff for BO17123.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24020566..24020697 226..357 100 <- Plus
2R 24020755..24020940 358..543 100 <- Plus
2R 24021003..24021284 544..825 99   Plus
2R 24020232..24020321 8..99 95 <- Plus
2R 24020384..24020509 100..225 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:58 Download gff for BO17123.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19907755..19907844 8..99 95 <- Plus
arm_2R 19907907..19908032 100..225 100 <- Plus
arm_2R 19908089..19908220 226..357 100 <- Plus
arm_2R 19908278..19908463 358..543 100 <- Plus
arm_2R 19908526..19908807 544..825 99   Plus

BO17123.5prime Sequence

810 bp (731 high quality bases) assembled on 2006-10-13

> BO17123.5prime
GAAGTTATCAGTCGACATGGACTGCCACCATCGCATTGAAGTGCCCCTGC
GGGCCGGAAAGAAAATGAAGAAGCGTCGGGAGCTGGACGCCCTGATAGCC
TCCCAGTCGTCCTCGGGCAAGAGAGCCAACCGGAGAGTCCCCGGAGGCAC
CAACTCCCAGGACAAGCTGCTCTCCGTCTCGACCGACGACCCTGAGGATT
ACGCATGGACAAATGTCGCTGGCAGTCGCCGCAGCCATCGAAAAATAGCC
TATTTCCGCATGTGCGGCCCGCTTCTATTCGGCATTATGGGCATTCTGAT
TGTGGGAATTTTGTACTGGCTCTACTTCGATCTGCGCCAGCAACTCACCG
ACTATCGCCAGAAGATCGAGGAGGTGTCTGCCATGAGCAAGAACTTCCCG
GACACCCTGCAAAGATGGCACGAGACTTCGTCCTACCTGCTGAAGAACCA
AACAGCCGTCATTTCGGAAATAAATGATTTGCAAAAATCAATGGAGAGCC
TGCGGAACAACTTTAGCAACCTGGAGGCGGCCGTGGCAGCGCAAAGAAAC
CACGGCAAGGACGAGAAGTTGGTGGCTGATTTCGGGGCCAAGATAGAAGC
CGTCGCCACCGACATAGAGGCCATCAAGGAGCACTACAATAAGTACACCG
AGGTGCAGAAAACACTGCAGGCCGAAACGGAAGCCTTAAAGCTCAATCTC
TCACAGCTACCCACGATTCAGGCTAACGCTTTACCCGCAAACTTATCGGA
TGATATTGCTGCGCTGAACAAACCACTTTTAATTCATTTAACTACTGGCC
CACGATCTGA

BO17123.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-PB 1203 CG3907-RB 1..756 17..772 3780 100 Plus
CG3907-PA 1203 CG3907-RA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-RA 1701 CG3907-RA 158..954 16..810 3920 99.6 Plus
CG3907-RB 1739 CG3907-RB 196..992 16..810 3920 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24021003..24021320 691..374 1590 100 Minus
2R 25286936 2R 24021790..24021982 208..16 965 100 Minus
2R 25286936 2R 24021376..24021542 374..208 835 100 Minus
2R 25286936 2R 24020820..24020942 810..690 500 97.6 Minus
Blast to na_te.dros performed on 2015-02-10 18:00:29 has no hits.

BO17123.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:53 Download gff for BO17123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3907-PA 1..795 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:02 Download gff for BO17123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 196..991 16..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:15 Download gff for BO17123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 196..991 16..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:15 Download gff for BO17123.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24020821..24020940 692..809 97 <- Minus
2R 24021003..24021319 375..691 100 <- Minus
2R 24021376..24021541 209..374 100 <- Minus
2R 24021790..24021982 16..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:02 Download gff for BO17123.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19908344..19908463 692..809 97 <- Minus
arm_2R 19908526..19908842 375..691 100 <- Minus
arm_2R 19908899..19909064 209..374 100 <- Minus
arm_2R 19909313..19909505 16..208 100   Minus

BO17123.complete Sequence

1234 bp assembled on 2006-10-11

GenBank Submission: FJ638750

> BO17123.complete
GAAGTTATCAGTCGACATGGACTGCCACCATCGCATTGAAGTGCCCCTGC
GGGCCGGAAAGAAAATGAAGAAGCGTCGGGAGCTGGACGCCCTGATAGCC
TCCCAGTCGTCCTCGGGCAAGAGAGCCAACCGGAGAGTCCCCGGAGGCAC
CAACTCCCAGGACAAGCTGCTCTCCGTCTCGACCGACGACCCTGAGGATT
ACGCATGGACAAATGTCGCTGGCAGTCGCCGCAGCCATCGAAAAATAGCC
TATTTCCGCATGTGCGGCCCGCTTCTATTCGGCATTATGGGCATTCTGAT
TGTGGGAATTTTGTACTGGCTCTACTTCGATCTGCGCCAGCAACTCACCG
ACTATCGCCAGAAGATCGAGGAGGTGTCTGCCATGAGCAAGAACTTCCCG
GACACCCTGCAAAGATGGCACGAGACTTCGTCCTACCTGCTGAAGAACCA
AACAGCCGTCATTTCGGAAATAAATGATTTGCAAAAATCAATGGAGAGCC
TGCGGAACAACTTTAGCAACCTGGAGGCGGCCGTGGCAGCGCAAAGAAAC
CACGGCAAGGACGAGAAGTTGGTGGCTGATTTCGGGGCCAAGATAGAAGC
CGTCGCCACCGACATAGAGGCCATCAAGGAGCACTACAATAAGTACACCG
AGGTGCAGAAAACACTGCAGGCCGAAACGGAAGCCTTAAAGCTCAATCTC
TCACAGCTACCCACGATTCAGGCTAACGCTTTACCCGCAAACTTATCGGA
TGATATTGCTGCGCTGAACAAAACCACTTTTAATTCATTTAAACTACTGG
CCAACGATCTGAAGAATGTGAATAATACCCTAAGTCAAACAACGAAAATC
CTCAGCGAGGAAATATCTCTGCACAAGACGAAAATAGACGACCTGCTGGA
TCGATCTGAAAACATTACGTCCCATGTGGCCACAATAAGTAACAGCTGGC
CGGAATATAAACAGAAAGTGACCAGTTTCGATGAATCTTTGGAGAGAATT
GAGAAAGAGATAACGCTGGCAAACAACAAGAACAATATGCTGGCCGCTTC
CGTGGATCAGCTAAAGAACTTTTGCATTCAGAGCATGGGCAATATTAAAG
CACCCAGCAGCGAAGACGGATCCGTAGTCCCCAAGCCCGAAGCGATTGCC
GTCAAGCAGGAAGTCATAAAGCCGTCTGCAAATGCTACAGTGAAGCTTCA
GGAATCCTTGAAGCTGGCAAGCTTTCTAGACCAT

BO17123.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-RA 1203 CG3907-PA 1..1200 17..1216 6000 100 Plus
CG3907-RB 1203 CG3907-PB 1..1200 17..1216 6000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-RA 1701 CG3907-RA 158..1358 16..1216 6005 100 Plus
CG3907-RB 1739 CG3907-RB 196..1396 16..1216 6005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24021003..24021320 691..374 1590 100 Minus
2R 25286936 2R 24021790..24021982 208..16 965 100 Minus
2R 25286936 2R 24020755..24020942 877..690 940 100 Minus
2R 25286936 2R 24021376..24021542 374..208 835 100 Minus
2R 25286936 2R 24020566..24020699 1009..876 670 100 Minus
2R 25286936 2R 24020384..24020511 1135..1008 640 100 Minus
2R 25286936 2R 24020241..24020323 1216..1134 415 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:10:59 has no hits.

BO17123.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:53 Download gff for BO17123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 1..1203 17..1220 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:12 Download gff for BO17123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 157..1366 16..1227 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:31 Download gff for BO17123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 197..1396 17..1218 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:54 Download gff for BO17123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RA 157..1366 16..1227 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:41 Download gff for BO17123.complete
Subject Subject Range Query Range Percent Splice Strand
CG3907-RB 197..1396 17..1218 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:41 Download gff for BO17123.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24020239..24020321 1136..1218 97 <- Minus
2R 24020384..24020509 1010..1135 100 <- Minus
2R 24020566..24020697 878..1009 100 <- Minus
2R 24020755..24020940 692..877 100 <- Minus
2R 24021003..24021319 375..691 100 <- Minus
2R 24021376..24021541 209..374 100 <- Minus
2R 24021790..24021981 17..208 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:31 Download gff for BO17123.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19907762..19907844 1136..1218 97 <- Minus
arm_2R 19907907..19908032 1010..1135 100 <- Minus
arm_2R 19908089..19908220 878..1009 100 <- Minus
arm_2R 19908278..19908463 692..877 100 <- Minus
arm_2R 19908526..19908842 375..691 100 <- Minus
arm_2R 19908899..19909064 209..374 100 <- Minus
arm_2R 19909313..19909504 17..208 100   Minus

BO17123.pep Sequence

Translation from 16 to 1234

> BO17123.pep
MDCHHRIEVPLRAGKKMKKRRELDALIASQSSSGKRANRRVPGGTNSQDK
LLSVSTDDPEDYAWTNVAGSRRSHRKIAYFRMCGPLLFGIMGILIVGILY
WLYFDLRQQLTDYRQKIEEVSAMSKNFPDTLQRWHETSSYLLKNQTAVIS
EINDLQKSMESLRNNFSNLEAAVAAQRNHGKDEKLVADFGAKIEAVATDI
EAIKEHYNKYTEVQKTLQAETEALKLNLSQLPTIQANALPANLSDDIAAL
NKTTFNSFKLLANDLKNVNNTLSQTTKILSEEISLHKTKIDDLLDRSENI
TSHVATISNSWPEYKQKVTSFDESLERIEKEITLANNKNNMLAASVDQLK
NFCIQSMGNIKAPSSEDGSVVPKPEAIAVKQEVIKPSANATVKLQESLKL
ASFLDH

BO17123.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3907-PA 400 CG3907-PA 1..400 1..400 2017 100 Plus
CG3907-PB 400 CG3907-PB 1..400 1..400 2017 100 Plus