Clone Sequence Records
BO17123.3prime Sequence
825 bp (681 high quality bases) assembled on 2006-10-13
> BO17123.3prime
ATGGTCTAGAAAGCTTGCCAGCTTCAAGGATTCCTGAAGCTTCACTGTAG
CATTTGCAGACGGCTTTATGACTTCCTGCTTGACGGCAATCGCTTCGGGC
TTGGGGACTACGGATCCGTCTTCGCTGCTGGGTGCTTTAATATTGCCCAT
GCTCTGAATGCAAAAGTTCTTTAGCTGATCCACGGAAGCGGCCAGCATAT
TGTTCTTGTTGTTTGCCAGCGTTATCTCTTTCTCAATTCTCTCCAAAGAT
TCATCGAAACTGGTCACTTTCTGTTTATATTCCGGCCAGCTGTTACTTAT
TGTGGCCACATGGGACGTAATGTTTTCAGATCGATCCAGCAGGTCGTCTA
TTTTCGTCTTGTGCAGAGATATTTCCTCGCTGAGGATTTTCGTTGTTTGA
CTTAGGGTATTATTCACATTCTTCAGATCGTTGGCCAGTAGTTTAAATGA
ATTAAAAGTGGTTTTGTTCAGCGCAGCAATATCATCCGATAAGTTTGCGG
GTAAAGCGTTAGCCTGAATCGTGGGTAGCTGTGAGAGATTGAGCTTTAAG
GCTTCCGTTTCGGCCTGCAGTGTTTTCTGCACCTCGGTGTACTTATTGTA
GTGCTCCTTGATGGCCTCTATGTCGGTGGCGACGGCTTCTATCTTGGCCC
CGAAATCAGCCACCAACTTCTCGTCCTTGCCGTGGTTTCTTTGCGCTGCC
ACGGCCGCCTCCAGGTTGCTAAAGTTGTTCCGCAGGCTCTCCATTGATTT
TTGCAAATCATTTATTTCCGAAATGACGGCTGTTTTGGTCTTCAGCAGGT
AGGACGAAGTCTCGTGCCATCTTTG
BO17123.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-PB | 1203 | CG3907-RB | 394..1200 | 825..19 | 3985 | 99.7 | Minus |
CG3907-PA | 1203 | CG3907-RA | 394..1200 | 825..19 | 3985 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-RA | 1701 | CG3907-RA | 552..1358 | 825..19 | 4005 | 99.8 | Minus |
CG3907-RB | 1739 | CG3907-RB | 590..1396 | 825..19 | 4005 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24021003..24021284 | 544..825 | 1380 | 99.3 | Plus |
2R | 25286936 | 2R | 24020755..24020942 | 358..545 | 940 | 100 | Plus |
2R | 25286936 | 2R | 24020566..24020699 | 226..359 | 670 | 100 | Plus |
2R | 25286936 | 2R | 24020384..24020511 | 100..227 | 640 | 100 | Plus |
2R | 25286936 | 2R | 24020241..24020323 | 19..101 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:59:55 has no hits.
BO17123.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:52 Download gff for
BO17123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-PA | 394..1203 | 15..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:43:58 Download gff for
BO17123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 590..1405 | 8..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:50 Download gff for
BO17123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 590..1405 | 8..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:50 Download gff for
BO17123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24020566..24020697 | 226..357 | 100 | <- | Plus |
2R | 24020755..24020940 | 358..543 | 100 | <- | Plus |
2R | 24021003..24021284 | 544..825 | 99 | | Plus |
2R | 24020232..24020321 | 8..99 | 95 | <- | Plus |
2R | 24020384..24020509 | 100..225 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:43:58 Download gff for
BO17123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19907755..19907844 | 8..99 | 95 | <- | Plus |
arm_2R | 19907907..19908032 | 100..225 | 100 | <- | Plus |
arm_2R | 19908089..19908220 | 226..357 | 100 | <- | Plus |
arm_2R | 19908278..19908463 | 358..543 | 100 | <- | Plus |
arm_2R | 19908526..19908807 | 544..825 | 99 | | Plus |
BO17123.5prime Sequence
810 bp (731 high quality bases) assembled on 2006-10-13
> BO17123.5prime
GAAGTTATCAGTCGACATGGACTGCCACCATCGCATTGAAGTGCCCCTGC
GGGCCGGAAAGAAAATGAAGAAGCGTCGGGAGCTGGACGCCCTGATAGCC
TCCCAGTCGTCCTCGGGCAAGAGAGCCAACCGGAGAGTCCCCGGAGGCAC
CAACTCCCAGGACAAGCTGCTCTCCGTCTCGACCGACGACCCTGAGGATT
ACGCATGGACAAATGTCGCTGGCAGTCGCCGCAGCCATCGAAAAATAGCC
TATTTCCGCATGTGCGGCCCGCTTCTATTCGGCATTATGGGCATTCTGAT
TGTGGGAATTTTGTACTGGCTCTACTTCGATCTGCGCCAGCAACTCACCG
ACTATCGCCAGAAGATCGAGGAGGTGTCTGCCATGAGCAAGAACTTCCCG
GACACCCTGCAAAGATGGCACGAGACTTCGTCCTACCTGCTGAAGAACCA
AACAGCCGTCATTTCGGAAATAAATGATTTGCAAAAATCAATGGAGAGCC
TGCGGAACAACTTTAGCAACCTGGAGGCGGCCGTGGCAGCGCAAAGAAAC
CACGGCAAGGACGAGAAGTTGGTGGCTGATTTCGGGGCCAAGATAGAAGC
CGTCGCCACCGACATAGAGGCCATCAAGGAGCACTACAATAAGTACACCG
AGGTGCAGAAAACACTGCAGGCCGAAACGGAAGCCTTAAAGCTCAATCTC
TCACAGCTACCCACGATTCAGGCTAACGCTTTACCCGCAAACTTATCGGA
TGATATTGCTGCGCTGAACAAACCACTTTTAATTCATTTAACTACTGGCC
CACGATCTGA
BO17123.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-PB | 1203 | CG3907-RB | 1..756 | 17..772 | 3780 | 100 | Plus |
CG3907-PA | 1203 | CG3907-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-RA | 1701 | CG3907-RA | 158..954 | 16..810 | 3920 | 99.6 | Plus |
CG3907-RB | 1739 | CG3907-RB | 196..992 | 16..810 | 3920 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24021003..24021320 | 691..374 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 24021790..24021982 | 208..16 | 965 | 100 | Minus |
2R | 25286936 | 2R | 24021376..24021542 | 374..208 | 835 | 100 | Minus |
2R | 25286936 | 2R | 24020820..24020942 | 810..690 | 500 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:00:29 has no hits.
BO17123.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:53 Download gff for
BO17123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-PA | 1..795 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:02 Download gff for
BO17123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 196..991 | 16..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:15 Download gff for
BO17123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 196..991 | 16..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:15 Download gff for
BO17123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24020821..24020940 | 692..809 | 97 | <- | Minus |
2R | 24021003..24021319 | 375..691 | 100 | <- | Minus |
2R | 24021376..24021541 | 209..374 | 100 | <- | Minus |
2R | 24021790..24021982 | 16..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:02 Download gff for
BO17123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19908344..19908463 | 692..809 | 97 | <- | Minus |
arm_2R | 19908526..19908842 | 375..691 | 100 | <- | Minus |
arm_2R | 19908899..19909064 | 209..374 | 100 | <- | Minus |
arm_2R | 19909313..19909505 | 16..208 | 100 | | Minus |
BO17123.complete Sequence
1234 bp assembled on 2006-10-11
GenBank Submission: FJ638750
> BO17123.complete
GAAGTTATCAGTCGACATGGACTGCCACCATCGCATTGAAGTGCCCCTGC
GGGCCGGAAAGAAAATGAAGAAGCGTCGGGAGCTGGACGCCCTGATAGCC
TCCCAGTCGTCCTCGGGCAAGAGAGCCAACCGGAGAGTCCCCGGAGGCAC
CAACTCCCAGGACAAGCTGCTCTCCGTCTCGACCGACGACCCTGAGGATT
ACGCATGGACAAATGTCGCTGGCAGTCGCCGCAGCCATCGAAAAATAGCC
TATTTCCGCATGTGCGGCCCGCTTCTATTCGGCATTATGGGCATTCTGAT
TGTGGGAATTTTGTACTGGCTCTACTTCGATCTGCGCCAGCAACTCACCG
ACTATCGCCAGAAGATCGAGGAGGTGTCTGCCATGAGCAAGAACTTCCCG
GACACCCTGCAAAGATGGCACGAGACTTCGTCCTACCTGCTGAAGAACCA
AACAGCCGTCATTTCGGAAATAAATGATTTGCAAAAATCAATGGAGAGCC
TGCGGAACAACTTTAGCAACCTGGAGGCGGCCGTGGCAGCGCAAAGAAAC
CACGGCAAGGACGAGAAGTTGGTGGCTGATTTCGGGGCCAAGATAGAAGC
CGTCGCCACCGACATAGAGGCCATCAAGGAGCACTACAATAAGTACACCG
AGGTGCAGAAAACACTGCAGGCCGAAACGGAAGCCTTAAAGCTCAATCTC
TCACAGCTACCCACGATTCAGGCTAACGCTTTACCCGCAAACTTATCGGA
TGATATTGCTGCGCTGAACAAAACCACTTTTAATTCATTTAAACTACTGG
CCAACGATCTGAAGAATGTGAATAATACCCTAAGTCAAACAACGAAAATC
CTCAGCGAGGAAATATCTCTGCACAAGACGAAAATAGACGACCTGCTGGA
TCGATCTGAAAACATTACGTCCCATGTGGCCACAATAAGTAACAGCTGGC
CGGAATATAAACAGAAAGTGACCAGTTTCGATGAATCTTTGGAGAGAATT
GAGAAAGAGATAACGCTGGCAAACAACAAGAACAATATGCTGGCCGCTTC
CGTGGATCAGCTAAAGAACTTTTGCATTCAGAGCATGGGCAATATTAAAG
CACCCAGCAGCGAAGACGGATCCGTAGTCCCCAAGCCCGAAGCGATTGCC
GTCAAGCAGGAAGTCATAAAGCCGTCTGCAAATGCTACAGTGAAGCTTCA
GGAATCCTTGAAGCTGGCAAGCTTTCTAGACCAT
BO17123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-RA | 1203 | CG3907-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
CG3907-RB | 1203 | CG3907-PB | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-RA | 1701 | CG3907-RA | 158..1358 | 16..1216 | 6005 | 100 | Plus |
CG3907-RB | 1739 | CG3907-RB | 196..1396 | 16..1216 | 6005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24021003..24021320 | 691..374 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 24021790..24021982 | 208..16 | 965 | 100 | Minus |
2R | 25286936 | 2R | 24020755..24020942 | 877..690 | 940 | 100 | Minus |
2R | 25286936 | 2R | 24021376..24021542 | 374..208 | 835 | 100 | Minus |
2R | 25286936 | 2R | 24020566..24020699 | 1009..876 | 670 | 100 | Minus |
2R | 25286936 | 2R | 24020384..24020511 | 1135..1008 | 640 | 100 | Minus |
2R | 25286936 | 2R | 24020241..24020323 | 1216..1134 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:10:59 has no hits.
BO17123.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:53 Download gff for
BO17123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RA | 1..1203 | 17..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:12 Download gff for
BO17123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RA | 157..1366 | 16..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:31 Download gff for
BO17123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 197..1396 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:54 Download gff for
BO17123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RA | 157..1366 | 16..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:41 Download gff for
BO17123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3907-RB | 197..1396 | 17..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:41 Download gff for
BO17123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24020239..24020321 | 1136..1218 | 97 | <- | Minus |
2R | 24020384..24020509 | 1010..1135 | 100 | <- | Minus |
2R | 24020566..24020697 | 878..1009 | 100 | <- | Minus |
2R | 24020755..24020940 | 692..877 | 100 | <- | Minus |
2R | 24021003..24021319 | 375..691 | 100 | <- | Minus |
2R | 24021376..24021541 | 209..374 | 100 | <- | Minus |
2R | 24021790..24021981 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:31 Download gff for
BO17123.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19907762..19907844 | 1136..1218 | 97 | <- | Minus |
arm_2R | 19907907..19908032 | 1010..1135 | 100 | <- | Minus |
arm_2R | 19908089..19908220 | 878..1009 | 100 | <- | Minus |
arm_2R | 19908278..19908463 | 692..877 | 100 | <- | Minus |
arm_2R | 19908526..19908842 | 375..691 | 100 | <- | Minus |
arm_2R | 19908899..19909064 | 209..374 | 100 | <- | Minus |
arm_2R | 19909313..19909504 | 17..208 | 100 | | Minus |
BO17123.pep Sequence
Translation from 16 to 1234
> BO17123.pep
MDCHHRIEVPLRAGKKMKKRRELDALIASQSSSGKRANRRVPGGTNSQDK
LLSVSTDDPEDYAWTNVAGSRRSHRKIAYFRMCGPLLFGIMGILIVGILY
WLYFDLRQQLTDYRQKIEEVSAMSKNFPDTLQRWHETSSYLLKNQTAVIS
EINDLQKSMESLRNNFSNLEAAVAAQRNHGKDEKLVADFGAKIEAVATDI
EAIKEHYNKYTEVQKTLQAETEALKLNLSQLPTIQANALPANLSDDIAAL
NKTTFNSFKLLANDLKNVNNTLSQTTKILSEEISLHKTKIDDLLDRSENI
TSHVATISNSWPEYKQKVTSFDESLERIEKEITLANNKNNMLAASVDQLK
NFCIQSMGNIKAPSSEDGSVVPKPEAIAVKQEVIKPSANATVKLQESLKL
ASFLDH
BO17123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3907-PA | 400 | CG3907-PA | 1..400 | 1..400 | 2017 | 100 | Plus |
CG3907-PB | 400 | CG3907-PB | 1..400 | 1..400 | 2017 | 100 | Plus |