Clone Sequence Records
BO17129.3prime Sequence
691 bp (593 high quality bases) assembled on 2006-10-13
> BO17129.3prime
ATGGTCTAGAAAGCTTGCAACCTGGCCCGTGGAGGGCGCTCCGTTCATGG
TCGCCTCCTCGTCGGAGGAGATGTCTATCATGCTCTCCACACGCGACGGC
GACATCACATACACAAAGTGCTCCGTGGAGCCCTCGGGGCCGACTGGCGG
CGGGGGTATGACCACGGAGCCGTCCTGCGGCGGCGGTGGCGGAGTATCTA
TGCTGCAGTACTTGAGATTCCCAGCTCCTCCTCCGCCTGAATCATCCGGC
GGTGGCGCTCCACCGTTGCAATCAAAGTTCTCCAGCTCTAGCTCCAAATC
ACTGACGATTCGCATGCAACGCATCTTGGCGAGCGACTGGAATTTCATGG
GCATAGCTCGCACCTGCCGCGCCAGACTCAAGAAGAAAAGAGTGTTTGCG
TCAAGTTCTCTGTTGGCCTGTAGCACGGCAGAGACGTCCCAATCGCTCGG
AAAACGCGGATCGCAAATCTTACGCGTTTTGGCGGGCGACGGCTGTTGTT
GCTGTTGAATTTGTGGCATTTGCATTGACTGCTGCTGCTGCGTTTGTACG
GAATTCCCTCCGGAGCAACTTAGGTTGATGGCCGTGGTTTGCGGCGAAGG
TTGTACCCTTCGCACCTTGGAGGCTGGTGGCGCTGGCGGCGGCGGCGGAG
GAGTGGGATTACCCATGGGTAAGCTCGGGCAGCTGCCGTTC
BO17129.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-PA | 1818 | CG13204-RA | 1143..1815 | 691..19 | 3340 | 99.8 | Minus |
CG13204-PB | 1515 | CG13204-RB | 840..1512 | 691..19 | 3340 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-RB | 1797 | CG13204-RB | 1071..1743 | 691..19 | 3350 | 99.9 | Minus |
CG13204-RA | 2074 | CG13204-RA | 1348..2020 | 691..19 | 3350 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11369561..11370233 | 691..19 | 3350 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-10 17:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6854 | 547..486 | 148 | 71 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2418 | 540..486 | 133 | 74.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2402 | 547..490 | 128 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6797 | 540..476 | 123 | 67.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6806 | 540..486 | 122 | 69.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2394 | 547..492 | 119 | 73.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6899 | 547..492 | 116 | 71.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2427 | 541..492 | 115 | 70 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6863..6923 | 551..492 | 114 | 69.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1132 | 546..490 | 114 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2447..2508 | 547..486 | 112 | 64.5 | Minus |
BO17129.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:57 Download gff for
BO17129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-PB | 840..1515 | 15..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:31 Download gff for
BO17129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 1348..2025 | 13..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:24 Download gff for
BO17129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 1348..2025 | 13..691 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:24 Download gff for
BO17129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11369561..11370238 | 13..691 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:31 Download gff for
BO17129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7257066..7257743 | 13..691 | 99 | | Minus |
BO17129.5prime Sequence
650 bp (598 high quality bases) assembled on 2006-10-13
> BO17129.5prime
GAAGTTATCAGTCGACATGGATTTCCTAAAGCCCTTCCAGGGACCGGGCA
GGAACTCCGCGAATGGCAATGGAAAATCCAACGACGAGGACGACACAGAG
TGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGGCGA
GGATGAGCTGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCATCCA
TGGGGACGCACACGGTTAATACCTATACTACCGCTTTAAGCAGTACTTCG
GCGTCCGGCATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATATGAT
CTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCGTGG
GACCGCAAATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGTCTA
AACTGTGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAG
TGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCATCCT
CAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCCCTG
GCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGC
CCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGGAGTGGCTGCTG
BO17129.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-PA | 1818 | CG13204-RA | 302..937 | 15..650 | 3155 | 99.8 | Plus |
CG13204-PB | 1515 | CG13204-RB | 1..634 | 17..650 | 3145 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-RB | 1797 | CG13204-RB | 230..865 | 15..650 | 3165 | 99.8 | Plus |
CG13204-RA | 2074 | CG13204-RA | 507..1142 | 15..650 | 3165 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11368755..11369355 | 50..650 | 2990 | 99.8 | Plus |
2R | 25286936 | 2R | 11368662..11368699 | 15..52 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:53:56 has no hits.
BO17129.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:57 Download gff for
BO17129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-PA | 296..937 | 9..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:02 Download gff for
BO17129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 501..1142 | 9..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:39:29 Download gff for
BO17129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 501..1142 | 9..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:39:29 Download gff for
BO17129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11368656..11368698 | 9..51 | 95 | -> | Plus |
2R | 11368757..11369355 | 52..650 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:02 Download gff for
BO17129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7256161..7256203 | 9..51 | 95 | -> | Plus |
arm_2R | 7256262..7256860 | 52..650 | 99 | | Plus |
BO17129.complete Sequence
1546 bp assembled on 2008-08-15
GenBank Submission: FJ634035
> BO17129.complete
GAAGTTATCAGTCGACATGGATTTCCTAAAGCCCTTCCAGGGACCGGGCA
GGAACTCCGCGAATGGCAATGGAAAATCCAACGACGAGGACGACACAGAG
TGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGGCGA
GGATGAGCTGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCATCCA
TGGGGACGCACACGGTTAATACCTATACTACCGCTTTAAGCAGTACTTCG
GCGTCCGGCATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATATGAT
CTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCGTGG
GACCGCAAATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGTCTA
AACTGTGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAG
TGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCATCCT
CAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCCCTG
GCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGC
CCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGCAGTGGCTGCTG
GTCTTCCCCTGCCACCTACGATCACGCCGCCTGGTTGCAGCACCGGCAGC
GCAACCAACAGCAATGTCGGTTGTCTGATCATCGAGCCGCATCTCTTTGC
GGCGGCGGACAACTTCAAGAAGGAACTGACAGCGGCTGCGGCAGCTGGAG
CACCTTTGGGATTGTTCCAGAACCTGGCCAACCAAGTGCAGAACGCCAAT
CGTTTGAACGGCAGCTGCCCGAGCTTACCCATGGGTAATCCCACTCCTCC
GCCGCCGCCGCCAGCGCCACCAGCCTCCAAGGTGCGAAGGGTACAACCTT
CGCCGCAAACCACGGCCATCAACCTAAGTTGCTCCGGAGGGAATTCCGTA
CAAACGCAGCAGCAGCAGTCAATGCAAATGCCACAAATTCAACAGCAACA
ACAGCCGTCGCCCGCCAAAACGCGTAAGATTTGCGATCCGCGTTTTCCGA
GCGATTGGGACGTCTCTGCCGTGCTACAGGCCAACAGAGAACTTGACGCA
AACACTCTTTTCTTCTTGAGTCTGGCGCGGCAGGTGCGAGCTATGCCCAT
GAAATTCCAGTCGCTCGCCAAGATGCGTTGCATGCGAATCGTCAGTGATT
TGGAGCTAGAGCTGGAGAACTTTGATTGCAACGGTGGAGCGCCACCGCCG
GATGATTCAGGCGGAGGAGGAGCTGGGAATCTCAAGTACTGCAGCATAGA
TACTCCGCCACCGCCGCCGCAGGACGGCTCCGTGGTCATACCCCCGCCGC
CAGTCGGCCCCGAGGGCTCCACGGAGCACTTTGTGTATGTGATGTCGCCG
TCGCGTGTGGAGAGCATGATAGACATCTCCTCCGACGAGGAGGCGACCAT
GAACGGAGCGCCCTCCACGGGCCAGGTTGCAAGCTTTCTAGACCAT
BO17129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-RA | 1818 | CG13204-PA | 302..1815 | 15..1528 | 7555 | 99.9 | Plus |
CG13204-RB | 1515 | CG13204-PB | 1..1512 | 17..1528 | 7545 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-RB | 1797 | CG13204-RB | 230..1743 | 15..1528 | 7555 | 99.9 | Plus |
CG13204-RA | 2074 | CG13204-RA | 507..2020 | 15..1528 | 7555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11368755..11370233 | 50..1528 | 7380 | 99.9 | Plus |
2R | 25286936 | 2R | 11368662..11368699 | 15..52 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6854 | 1000..1061 | 148 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2402 | 1000..1057 | 128 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6797 | 1007..1071 | 123 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6806 | 1007..1061 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2394 | 1000..1055 | 119 | 73.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6841..6899 | 1000..1055 | 116 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2427 | 1006..1055 | 115 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6863..6923 | 996..1055 | 114 | 69.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1076..1132 | 1001..1057 | 114 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2447..2508 | 1000..1061 | 112 | 64.5 | Plus |
BO17129.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:34 Download gff for
BO17129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RB | 231..1755 | 9..1534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:36 Download gff for
BO17129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 509..2020 | 17..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:11 Download gff for
BO17129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RB | 239..1750 | 17..1530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:35 Download gff for
BO17129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13204-RA | 509..2020 | 17..1530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:35 Download gff for
BO17129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11368664..11368698 | 17..51 | 100 | -> | Plus |
2R | 11368757..11370233 | 52..1530 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:36 Download gff for
BO17129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7256169..7256203 | 17..51 | 100 | -> | Plus |
arm_2R | 7256262..7257738 | 52..1530 | 99 | | Plus |
BO17129.pep Sequence
Translation from 16 to 1546
> BO17129.pep
MDFLKPFQGPGRNSANGNGKSNDEDDTECDFGYQVLAKAASNGGEDELKI
TIATASAGCSSMGTHTVNTYTTALSSTSASGITSSLGATTPPNMISPGSN
LGGTGGGSGSVGPQIHNSNSNGSATGSLNCAAVAPLSSMTPPATSGSNSA
VVLPLPISPASSVAAAAAAVSKANANALASLANHLPMGLGVSGLAQQMFP
LATLKAAAVAAGLPLPPTITPPGCSTGSATNSNVGCLIIEPHLFAAADNF
KKELTAAAAAGAPLGLFQNLANQVQNANRLNGSCPSLPMGNPTPPPPPPA
PPASKVRRVQPSPQTTAINLSCSGGNSVQTQQQQSMQMPQIQQQQQPSPA
KTRKICDPRFPSDWDVSAVLQANRELDANTLFFLSLARQVRAMPMKFQSL
AKMRCMRIVSDLELELENFDCNGGAPPPDDSGGGGAGNLKYCSIDTPPPP
PQDGSVVIPPPPVGPEGSTEHFVYVMSPSRVESMIDISSDEEATMNGAPS
TGQVASFLDH
BO17129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13204-PB | 504 | CG13204-PB | 1..504 | 1..504 | 2615 | 100 | Plus |
CG13204-PA | 605 | CG13204-PA | 102..605 | 1..504 | 2615 | 100 | Plus |