Clone BO17129 Report

Search the DGRC for BO17129

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG13204-RB
Protein status:BO17129.pep: Imported from assembly
Sequenced Size:1546

Clone Sequence Records

BO17129.3prime Sequence

691 bp (593 high quality bases) assembled on 2006-10-13

> BO17129.3prime
ATGGTCTAGAAAGCTTGCAACCTGGCCCGTGGAGGGCGCTCCGTTCATGG
TCGCCTCCTCGTCGGAGGAGATGTCTATCATGCTCTCCACACGCGACGGC
GACATCACATACACAAAGTGCTCCGTGGAGCCCTCGGGGCCGACTGGCGG
CGGGGGTATGACCACGGAGCCGTCCTGCGGCGGCGGTGGCGGAGTATCTA
TGCTGCAGTACTTGAGATTCCCAGCTCCTCCTCCGCCTGAATCATCCGGC
GGTGGCGCTCCACCGTTGCAATCAAAGTTCTCCAGCTCTAGCTCCAAATC
ACTGACGATTCGCATGCAACGCATCTTGGCGAGCGACTGGAATTTCATGG
GCATAGCTCGCACCTGCCGCGCCAGACTCAAGAAGAAAAGAGTGTTTGCG
TCAAGTTCTCTGTTGGCCTGTAGCACGGCAGAGACGTCCCAATCGCTCGG
AAAACGCGGATCGCAAATCTTACGCGTTTTGGCGGGCGACGGCTGTTGTT
GCTGTTGAATTTGTGGCATTTGCATTGACTGCTGCTGCTGCGTTTGTACG
GAATTCCCTCCGGAGCAACTTAGGTTGATGGCCGTGGTTTGCGGCGAAGG
TTGTACCCTTCGCACCTTGGAGGCTGGTGGCGCTGGCGGCGGCGGCGGAG
GAGTGGGATTACCCATGGGTAAGCTCGGGCAGCTGCCGTTC

BO17129.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-PA 1818 CG13204-RA 1143..1815 691..19 3340 99.8 Minus
CG13204-PB 1515 CG13204-RB 840..1512 691..19 3340 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-RB 1797 CG13204-RB 1071..1743 691..19 3350 99.9 Minus
CG13204-RA 2074 CG13204-RA 1348..2020 691..19 3350 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11369561..11370233 691..19 3350 99.9 Minus
Blast to na_te.dros performed 2015-02-10 17:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6854 547..486 148 71 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2418 540..486 133 74.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2402 547..490 128 69 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6797 540..476 123 67.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6806 540..486 122 69.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2394 547..492 119 73.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6899 547..492 116 71.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2427 541..492 115 70 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6863..6923 551..492 114 69.8 Minus
roo 9092 roo DM_ROO 9092bp 1076..1132 546..490 114 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2447..2508 547..486 112 64.5 Minus

BO17129.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:57 Download gff for BO17129.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-PB 840..1515 15..691 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:31 Download gff for BO17129.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 1348..2025 13..691 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:24 Download gff for BO17129.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 1348..2025 13..691 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:24 Download gff for BO17129.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11369561..11370238 13..691 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:31 Download gff for BO17129.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7257066..7257743 13..691 99   Minus

BO17129.5prime Sequence

650 bp (598 high quality bases) assembled on 2006-10-13

> BO17129.5prime
GAAGTTATCAGTCGACATGGATTTCCTAAAGCCCTTCCAGGGACCGGGCA
GGAACTCCGCGAATGGCAATGGAAAATCCAACGACGAGGACGACACAGAG
TGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGGCGA
GGATGAGCTGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCATCCA
TGGGGACGCACACGGTTAATACCTATACTACCGCTTTAAGCAGTACTTCG
GCGTCCGGCATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATATGAT
CTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCGTGG
GACCGCAAATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGTCTA
AACTGTGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAG
TGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCATCCT
CAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCCCTG
GCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGC
CCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGGAGTGGCTGCTG

BO17129.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-PA 1818 CG13204-RA 302..937 15..650 3155 99.8 Plus
CG13204-PB 1515 CG13204-RB 1..634 17..650 3145 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-RB 1797 CG13204-RB 230..865 15..650 3165 99.8 Plus
CG13204-RA 2074 CG13204-RA 507..1142 15..650 3165 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11368755..11369355 50..650 2990 99.8 Plus
2R 25286936 2R 11368662..11368699 15..52 190 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:53:56 has no hits.

BO17129.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:02:57 Download gff for BO17129.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-PA 296..937 9..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:02 Download gff for BO17129.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 501..1142 9..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:39:29 Download gff for BO17129.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 501..1142 9..650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:39:29 Download gff for BO17129.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11368656..11368698 9..51 95 -> Plus
2R 11368757..11369355 52..650 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:02 Download gff for BO17129.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7256161..7256203 9..51 95 -> Plus
arm_2R 7256262..7256860 52..650 99   Plus

BO17129.complete Sequence

1546 bp assembled on 2008-08-15

GenBank Submission: FJ634035

> BO17129.complete
GAAGTTATCAGTCGACATGGATTTCCTAAAGCCCTTCCAGGGACCGGGCA
GGAACTCCGCGAATGGCAATGGAAAATCCAACGACGAGGACGACACAGAG
TGTGATTTTGGCTACCAAGTTTTGGCCAAGGCGGCCAGCAATGGAGGCGA
GGATGAGCTGAAGATAACCATTGCCACTGCATCGGCTGGTTGCTCATCCA
TGGGGACGCACACGGTTAATACCTATACTACCGCTTTAAGCAGTACTTCG
GCGTCCGGCATAACATCAAGTTTGGGCGCGACCACGCCCCCGAATATGAT
CTCTCCAGGCAGCAATTTGGGCGGAACAGGAGGAGGTTCTGGGTCCGTGG
GACCGCAAATCCACAACAGCAATAGCAACGGCAGTGCAACCGGAAGTCTA
AACTGTGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAG
TGGCAGTAATTCCGCCGTAGTCTTGCCCCTGCCCATCTCACCCGCATCCT
CAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCCAATGCAAATGCCCTG
GCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGC
CCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGCAGTGGCTGCTG
GTCTTCCCCTGCCACCTACGATCACGCCGCCTGGTTGCAGCACCGGCAGC
GCAACCAACAGCAATGTCGGTTGTCTGATCATCGAGCCGCATCTCTTTGC
GGCGGCGGACAACTTCAAGAAGGAACTGACAGCGGCTGCGGCAGCTGGAG
CACCTTTGGGATTGTTCCAGAACCTGGCCAACCAAGTGCAGAACGCCAAT
CGTTTGAACGGCAGCTGCCCGAGCTTACCCATGGGTAATCCCACTCCTCC
GCCGCCGCCGCCAGCGCCACCAGCCTCCAAGGTGCGAAGGGTACAACCTT
CGCCGCAAACCACGGCCATCAACCTAAGTTGCTCCGGAGGGAATTCCGTA
CAAACGCAGCAGCAGCAGTCAATGCAAATGCCACAAATTCAACAGCAACA
ACAGCCGTCGCCCGCCAAAACGCGTAAGATTTGCGATCCGCGTTTTCCGA
GCGATTGGGACGTCTCTGCCGTGCTACAGGCCAACAGAGAACTTGACGCA
AACACTCTTTTCTTCTTGAGTCTGGCGCGGCAGGTGCGAGCTATGCCCAT
GAAATTCCAGTCGCTCGCCAAGATGCGTTGCATGCGAATCGTCAGTGATT
TGGAGCTAGAGCTGGAGAACTTTGATTGCAACGGTGGAGCGCCACCGCCG
GATGATTCAGGCGGAGGAGGAGCTGGGAATCTCAAGTACTGCAGCATAGA
TACTCCGCCACCGCCGCCGCAGGACGGCTCCGTGGTCATACCCCCGCCGC
CAGTCGGCCCCGAGGGCTCCACGGAGCACTTTGTGTATGTGATGTCGCCG
TCGCGTGTGGAGAGCATGATAGACATCTCCTCCGACGAGGAGGCGACCAT
GAACGGAGCGCCCTCCACGGGCCAGGTTGCAAGCTTTCTAGACCAT

BO17129.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-RA 1818 CG13204-PA 302..1815 15..1528 7555 99.9 Plus
CG13204-RB 1515 CG13204-PB 1..1512 17..1528 7545 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-RB 1797 CG13204-RB 230..1743 15..1528 7555 99.9 Plus
CG13204-RA 2074 CG13204-RA 507..2020 15..1528 7555 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11368755..11370233 50..1528 7380 99.9 Plus
2R 25286936 2R 11368662..11368699 15..52 190 100 Plus
Blast to na_te.dros performed 2014-11-27 15:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6854 1000..1061 148 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2402 1000..1057 128 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6797 1007..1071 123 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6806 1007..1061 122 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2394 1000..1055 119 73.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6899 1000..1055 116 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2427 1006..1055 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6863..6923 996..1055 114 69.8 Plus
roo 9092 roo DM_ROO 9092bp 1076..1132 1001..1057 114 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2447..2508 1000..1061 112 64.5 Plus

BO17129.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:34 Download gff for BO17129.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RB 231..1755 9..1534 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:36 Download gff for BO17129.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 509..2020 17..1530 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:11 Download gff for BO17129.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RB 239..1750 17..1530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:35 Download gff for BO17129.complete
Subject Subject Range Query Range Percent Splice Strand
CG13204-RA 509..2020 17..1530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:35 Download gff for BO17129.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11368664..11368698 17..51 100 -> Plus
2R 11368757..11370233 52..1530 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:36 Download gff for BO17129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7256169..7256203 17..51 100 -> Plus
arm_2R 7256262..7257738 52..1530 99   Plus

BO17129.pep Sequence

Translation from 16 to 1546

> BO17129.pep
MDFLKPFQGPGRNSANGNGKSNDEDDTECDFGYQVLAKAASNGGEDELKI
TIATASAGCSSMGTHTVNTYTTALSSTSASGITSSLGATTPPNMISPGSN
LGGTGGGSGSVGPQIHNSNSNGSATGSLNCAAVAPLSSMTPPATSGSNSA
VVLPLPISPASSVAAAAAAVSKANANALASLANHLPMGLGVSGLAQQMFP
LATLKAAAVAAGLPLPPTITPPGCSTGSATNSNVGCLIIEPHLFAAADNF
KKELTAAAAAGAPLGLFQNLANQVQNANRLNGSCPSLPMGNPTPPPPPPA
PPASKVRRVQPSPQTTAINLSCSGGNSVQTQQQQSMQMPQIQQQQQPSPA
KTRKICDPRFPSDWDVSAVLQANRELDANTLFFLSLARQVRAMPMKFQSL
AKMRCMRIVSDLELELENFDCNGGAPPPDDSGGGGAGNLKYCSIDTPPPP
PQDGSVVIPPPPVGPEGSTEHFVYVMSPSRVESMIDISSDEEATMNGAPS
TGQVASFLDH

BO17129.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13204-PB 504 CG13204-PB 1..504 1..504 2615 100 Plus
CG13204-PA 605 CG13204-PA 102..605 1..504 2615 100 Plus