Clone Sequence Records
BO17132.3prime Sequence
809 bp (804 high quality bases) assembled on 2006-10-13
> BO17132.3prime
ATGGTCTAGAAAGCTTGCGTAACGTCTATTGCCGCCTCCCATATTTCCAC
CCTGGCCACCACCTCCGGTGTTGTAGTTGTTGCCAGCAAAGCCTTGACCT
CCACCCTGGTTACCCTTGTTGAATCCTCCACCACCACCTCCTTGACTGTA
AGGAGCTGGACGGTTGTTGCCAAAGTTGCTGTTGCGCTGTGGACCGCCGC
CGTAGCTCTGCTGGTATTCATTTCCGAAGCCACCGCCACCACCACCTCCA
CCACCGTTACCGCCCCAGCTGCCATTGCTGTTTCCGCCGCCGTAGCCGCC
GCCACCACCACCGTTCCAGCCGCCGTTGCCGCCACCCTGGTTATTCCATG
GACCACCTCCGCTTCCGCCTTGCTGATTCCAACCGCCAGAGCCGCCGCCC
TGACCGCCTCCAAAGTTACCGCCGCTGTTGCCGAATCCTCCGCCGCCGCC
AGCTCCGCCCCAGTTGCCCCCACCGTTCTGTCTGTTCTGGCCTCCCCAGC
CACCGCCTCCCTGGCCGCGGTCACCCTGACCACCGCGACCGCCAGCTCGA
GGACCTCCGCGTCCGCCACCTCCGCCCTGTCGATCCATATCCTGCTTGGC
AATAGCCTTCTTCACGTCCAGGGTCTTGTTCTTGATGGAGTGGGTCTTCT
GAAGGATGATTTTGTCAACGGGATCGTAGTCATCGAACTCAATGAAGGCG
AAGCCGCGCTTCTTGCCGGTGTCCTTGTCGGAAACAATGTTCACGCTCAC
GATCTGGCCAAAGTCCTTGAAGTACTCGCGCAGGCACTCTTCATCGTGAT
CGTCTCGAA
BO17132.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12749-PA | 1158 | Hrb87F-RA | 365..1155 | 809..19 | 3955 | 100 | Minus |
| CG12749-PB | 978 | Hrb87F-RB | 365..939 | 809..235 | 2875 | 100 | Minus |
| CG12749-PB | 978 | Hrb87F-RB | 931..975 | 63..19 | 225 | 100 | Minus |
| CG9983-PE | 1083 | Hrb98DE-RE | 451..519 | 729..661 | 145 | 88.4 | Minus |
| CG9983-PD | 1086 | Hrb98DE-RD | 454..522 | 729..661 | 145 | 88.4 | Minus |
| CG9983-PF | 1086 | Hrb98DE-RF | 454..522 | 729..661 | 145 | 88.4 | Minus |
| CG9983-PA | 1095 | Hrb98DE-RA | 463..531 | 729..661 | 145 | 88.4 | Minus |
| CG9983-PB | 1098 | Hrb98DE-RB | 466..534 | 729..661 | 145 | 88.4 | Minus |
| CG9983-PC | 1098 | Hrb98DE-RC | 466..534 | 729..661 | 145 | 88.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 2759 | CG12749-RE | 509..1299 | 809..19 | 3955 | 100 | Minus |
| Hrb87F-RD | 1587 | CG12749-RD | 509..1299 | 809..19 | 3955 | 100 | Minus |
| Hrb87F-RC | 1810 | CG12749-RC | 509..1299 | 809..19 | 3955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13658634..13659332 | 111..809 | 3495 | 100 | Plus |
| 3R | 32079331 | 3R | 13658470..13658565 | 19..114 | 480 | 100 | Plus |
| 3R | 32079331 | 3R | 28601045..28601188 | 804..661 | 270 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:52:03 has no hits.
BO17132.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:02 Download gff for
BO17132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12749-PA | 367..1158 | 18..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:05 Download gff for
BO17132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 509..1299 | 19..809 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:40 Download gff for
BO17132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 509..1299 | 19..809 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:40 Download gff for
BO17132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13658470..13658564 | 19..113 | 100 | <- | Plus |
| 3R | 13658637..13659332 | 114..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:05 Download gff for
BO17132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9484192..9484286 | 19..113 | 100 | <- | Plus |
| arm_3R | 9484359..9485054 | 114..809 | 100 | | Plus |
BO17132.5prime Sequence
876 bp (802 high quality bases) assembled on 2006-10-13
> BO17132.5prime
GAAGTTATCAGTCGACATGGCGGAACAAAACGATTCCAACGGAAACTACG
ACGATGGTGAAGAGATCACCGAGCCAGAGCAGCTGCGCAAACTGTTCATC
GGCGGACTGGACTACCGCACCACAGATGATGGCCTGAAGGCTCACTTCGA
GAAGTGGGGCAACATTGTCGACGTGGTGGTGATGAAGGATCCCAAGACGA
AGCGCTCTCGCGGCTTCGGTTTCATCACGTACTCCCAGTCGTACATGATC
GACAATGCGCAGAATGCCAGGCCACACAAGATCGATGGACGCACCGTGGA
GCCCAAGAGGGCTGTGCCACGCCAGGAGATCGATTCCCCGAATGCGGGAG
CCACGGTAAAGAAGCTCTTTGTGGGCGGGCTTCGAGACGATCACGATGAA
GAGTGCCTGCGCGAGTACTTCAAGGACTTTGGCCAGATCGTGAGCGTGAA
CATTGTTTCCGACAAGGACACCGGCAAGAAGCGCGGCTTCGCCTTCATTG
AGTTCGATGACTACGATCCCGTTGACAAAATCATCCTTCAGAAGACCCAC
TCCATCAAGAACAAGACCCTGGACGTGAAGAAGGCTATTGCCAAGCAGGA
TATGGATCGACAGGGCGGAGGTGGCGGACGCGGAGGTCCTCGAGCTGGCG
GTCGCGGTGGTCAGGGTGACCGCGGCCAGGGAGGCGGTGGCTGGGGAGGC
CAGAACAGACAGAACGGTGGGGGCAACTGGGGCGGAGCTGGCGGCGGCGG
AGGATTCGGCAACAGCGGCGGTAACTTTGGAGGCGGTCAGGGCGGCGGCT
CTGGCGGGTGGAATCAGCAAGGCGGAAGCGGAGGTGGTCCATGGAATAAC
CAGGGTGGCGGGCACGGCGGCTGGAA
BO17132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12749-PA | 1158 | Hrb87F-RA | 1..860 | 17..876 | 4225 | 99.6 | Plus |
| CG12749-PB | 978 | Hrb87F-RB | 1..860 | 17..876 | 4225 | 99.6 | Plus |
| CG9983-PE | 1083 | Hrb98DE-RE | 127..182 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PD | 1086 | Hrb98DE-RD | 130..185 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PF | 1086 | Hrb98DE-RF | 130..185 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PA | 1095 | Hrb98DE-RA | 139..194 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PB | 1098 | Hrb98DE-RB | 142..197 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PC | 1098 | Hrb98DE-RC | 142..197 | 137..192 | 180 | 92.8 | Plus |
| CG9983-PE | 1083 | Hrb98DE-RE | 451..519 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PD | 1086 | Hrb98DE-RD | 454..522 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PF | 1086 | Hrb98DE-RF | 454..522 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PA | 1095 | Hrb98DE-RA | 463..531 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PB | 1098 | Hrb98DE-RB | 466..534 | 461..529 | 145 | 88.4 | Plus |
| CG9983-PC | 1098 | Hrb98DE-RC | 466..534 | 461..529 | 145 | 88.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 2759 | CG12749-RE | 145..1004 | 17..876 | 4255 | 99.7 | Plus |
| Hrb87F-RD | 1587 | CG12749-RD | 145..1004 | 17..876 | 4255 | 99.7 | Plus |
| Hrb87F-RC | 1810 | CG12749-RC | 145..1004 | 17..876 | 4255 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13658837..13659650 | 876..63 | 4025 | 99.6 | Minus |
| 3R | 32079331 | 3R | 28600724..28601188 | 65..529 | 855 | 78.9 | Plus |
| 3R | 32079331 | 3R | 13660340..13660387 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:09:00 has no hits.
BO17132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:02 Download gff for
BO17132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12749-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:10 Download gff for
BO17132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 140..1004 | 10..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:44:55 Download gff for
BO17132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 140..1004 | 10..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:44:55 Download gff for
BO17132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13658837..13659648 | 65..876 | 99 | <- | Minus |
| 3R | 13660340..13660392 | 10..64 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:10 Download gff for
BO17132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9484559..9485370 | 65..876 | 99 | <- | Minus |
| arm_3R | 9486062..9486114 | 10..64 | 94 | | Minus |
BO17132.complete Sequence
1189 bp assembled on 2006-10-11
GenBank Submission: FJ634036
> BO17132.complete
GAAGTTATCAGTCGACATGGCGGAACAAAACGATTCCAACGGAAACTACG
ACGATGGTGAAGAGATCACCGAGCCAGAGCAGCTGCGCAAACTGTTCATC
GGCGGACTGGACTACCGCACCACAGATGATGGCCTGAAGGCTCACTTCGA
GAAGTGGGGCAACATTGTCGACGTGGTGGTGATGAAGGATCCCAAGACGA
AGCGCTCTCGCGGCTTCGGTTTCATCACGTACTCCCAGTCGTACATGATC
GACAATGCGCAGAATGCCAGGCCACACAAGATCGATGGACGCACCGTGGA
GCCCAAGAGGGCTGTGCCACGCCAGGAGATCGATTCCCCGAATGCGGGAG
CCACGGTAAAGAAGCTCTTTGTGGGCGGGCTTCGAGACGATCACGATGAA
GAGTGCCTGCGCGAGTACTTCAAGGACTTTGGCCAGATCGTGAGCGTGAA
CATTGTTTCCGACAAGGACACCGGCAAGAAGCGCGGCTTCGCCTTCATTG
AGTTCGATGACTACGATCCCGTTGACAAAATCATCCTTCAGAAGACCCAC
TCCATCAAGAACAAGACCCTGGACGTGAAGAAGGCTATTGCCAAGCAGGA
TATGGATCGACAGGGCGGAGGTGGCGGACGCGGAGGTCCTCGAGCTGGCG
GTCGCGGTGGTCAGGGTGACCGCGGCCAGGGAGGCGGTGGCTGGGGAGGC
CAGAACAGACAGAACGGTGGGGGCAACTGGGGCGGAGCTGGCGGCGGCGG
AGGATTCGGCAACAGCGGCGGTAACTTTGGAGGCGGTCAGGGCGGCGGCT
CTGGCGGTTGGAATCAGCAAGGCGGAAGCGGAGGTGGTCCATGGAATAAC
CAGGGTGGCGGCAACGGCGGCTGGAACGGTGGTGGTGGCGGCGGCTACGG
CGGCGGAAACAGCAATGGCAGCTGGGGCGGTAACGGTGGTGGAGGTGGTG
GTGGCGGTGGCTTCGGAAATGAATACCAGCAGAGCTACGGCGGCGGTCCA
CAGCGCAACAGCAACTTTGGCAACAACCGTCCAGCTCCTTACAGTCAAGG
AGGTGGTGGTGGAGGATTCAACAAGGGTAACCAGGGTGGAGGTCAAGGCT
TTGCTGGCAACAACTACAACACCGGAGGTGGTGGCCAGGGTGGAAATATG
GGAGGCGGCAATAGACGTTACGCAAGCTTTCTAGACCAT
BO17132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 1158 | CG12749-PE | 1..1155 | 17..1171 | 5775 | 100 | Plus |
| Hrb87F-RD | 1158 | CG12749-PD | 1..1155 | 17..1171 | 5775 | 100 | Plus |
| Hrb87F-RC | 1158 | CG12749-PC | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 2759 | CG12749-RE | 145..1299 | 17..1171 | 5775 | 100 | Plus |
| Hrb87F-RD | 1587 | CG12749-RD | 145..1299 | 17..1171 | 5775 | 100 | Plus |
| Hrb87F-RC | 1810 | CG12749-RC | 145..1299 | 17..1171 | 5775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13658634..13659650 | 1079..63 | 5085 | 100 | Minus |
| 3R | 32079331 | 3R | 28600724..28601188 | 65..529 | 855 | 78.9 | Plus |
| 3R | 32079331 | 3R | 13658470..13658565 | 1171..1076 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 13660340..13660387 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:57:14 has no hits.
BO17132.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:56 Download gff for
BO17132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RA | 1..1158 | 17..1172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:15 Download gff for
BO17132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RA | 128..1287 | 10..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:00 Download gff for
BO17132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 145..1299 | 17..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:56 Download gff for
BO17132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RA | 128..1287 | 10..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:53 Download gff for
BO17132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 145..1299 | 17..1173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:53 Download gff for
BO17132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13658468..13658564 | 1077..1173 | 97 | <- | Minus |
| 3R | 13658637..13659648 | 65..1076 | 100 | <- | Minus |
| 3R | 13660340..13660387 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:00 Download gff for
BO17132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9484190..9484286 | 1077..1173 | 97 | <- | Minus |
| arm_3R | 9484359..9485370 | 65..1076 | 100 | <- | Minus |
| arm_3R | 9486062..9486109 | 17..64 | 100 | | Minus |
BO17132.pep Sequence
Translation from 16 to 1189
> BO17132.pep
MAEQNDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNI
VDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAV
PRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDK
DTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQG
GGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNS
GGNFGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGGGGGYGGGNSN
GSWGGNGGGGGGGGGFGNEYQQSYGGGPQRNSNFGNNRPAPYSQGGGGGG
FNKGNQGGGQGFAGNNYNTGGGGQGGNMGGGNRRYASFLDH
BO17132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-PE | 385 | CG12749-PE | 1..385 | 1..385 | 2152 | 100 | Plus |
| Hrb87F-PD | 385 | CG12749-PD | 1..385 | 1..385 | 2152 | 100 | Plus |
| Hrb87F-PC | 385 | CG12749-PC | 1..385 | 1..385 | 2152 | 100 | Plus |
| Hrb87F-PA | 385 | CG12749-PA | 1..385 | 1..385 | 2152 | 100 | Plus |
| Hrb98DE-PF | 361 | CG9983-PF | 6..361 | 3..385 | 1194 | 63.4 | Plus |
