Clone Sequence Records
BO17134.3prime Sequence
671 bp (621 high quality bases) assembled on 2006-10-13
> BO17134.3prime
ATGGTCTAGAAAGCTTGCCACATCGTACAATTTCATGTTCTCGATCTCGT
CCAGCGTATCCTCCGATCCGGATGCCGTCAGATCCGACAGCTCGTCCAGG
CACTTCTGTCGCTTGCGCACATTCCAGTGCAGTCCGTCGGCTAGGGAGGC
GAACCAGTCGGATATCTGATCCTGGGCGCAGATGCATGGCACGGGATAAA
TGGAGGTGGTCACGCGAAGGCTGTCGCCATGGAAGAGCTCCTGCCTGTTG
CGTCCATCGAAGCTAACCCACGATGTGTTGCGGCTCTCGGGGGATACTGA
TATCTTCAGCTCCACTCCTGCTGGCACCACAATGGGTCGGAAGCTAAGCG
AATGCGGGCAGATGGGAGTCACCATAATCGCCGGCACGGAGGGATGGATC
ATGGACGCACCGGCCGCCGCCGCATATGCCGTGCTTCCCGTGGGCGTCGA
TACGATCAGACCGTCGCCCTGCACCGACGTGATATACTTTCCGTCCAGAA
ACAGATCAATATTGCTCAGATACGGCGATGGACCACGATCAATGACCACT
TCGTTGAGCACCAGTATGCTGTTGGCTGCAGGTCGCGCCTCACCATCTAG
ATCTGCCTCCAGAGTCTTAGCCTCGTGTTTCCTATCGCTCCTGCGATGCA
TAACACAGCGCAAACGACTGC
BO17134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-PC | 1128 | CG33156-RC | 473..1125 | 671..19 | 3265 | 100 | Minus |
| CG33156-PA | 1365 | CG33156-RA | 710..1362 | 671..19 | 3265 | 100 | Minus |
| CG33156-PE | 1473 | CG33156-RE | 818..1470 | 671..19 | 3265 | 100 | Minus |
| CG33156-PB | 1362 | CG33156-RB | 707..1359 | 671..19 | 3265 | 100 | Minus |
| CG6145-PA | 1563 | CG6145-RA | 1099..1281 | 480..298 | 465 | 90.1 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 1183..1365 | 480..298 | 465 | 90.1 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 799..981 | 480..298 | 465 | 90.1 | Minus |
| CG6145-PA | 1563 | CG6145-RA | 1431..1496 | 148..83 | 155 | 89.3 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 1515..1580 | 148..83 | 155 | 89.3 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 1131..1196 | 148..83 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1795 | CG33156-RF | 777..1429 | 671..19 | 3265 | 100 | Minus |
| CG33156-RB | 1824 | CG33156-RB | 806..1458 | 671..19 | 3265 | 100 | Minus |
| CG33156-RE | 2330 | CG33156-RE | 1312..1964 | 671..19 | 3265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13548954..13549321 | 304..671 | 1840 | 100 | Plus |
| 2R | 25286936 | 2R | 13548610..13548896 | 19..305 | 1435 | 100 | Plus |
| 2R | 25286936 | 2R | 13538198..13538468 | 304..574 | 770 | 85.6 | Plus |
| 2R | 25286936 | 2R | 13537799..13538051 | 53..305 | 545 | 81 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:33:36 has no hits.
BO17134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:05 Download gff for
BO17134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-PE | 818..1473 | 18..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:42:55 Download gff for
BO17134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 1312..1964 | 19..671 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:19 Download gff for
BO17134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 1312..1964 | 19..671 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:19 Download gff for
BO17134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13548610..13548894 | 19..303 | 100 | <- | Plus |
| 2R | 13548954..13549321 | 304..671 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:42:55 Download gff for
BO17134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436115..9436399 | 19..303 | 100 | <- | Plus |
| arm_2R | 9436459..9436826 | 304..671 | 100 | | Plus |
BO17134.5prime Sequence
622 bp (579 high quality bases) assembled on 2006-10-13
> BO17134.5prime
GAAGTTATCAGTCGACATGAAAAACTCCGCCATGGTGATGCAGATCCAGG
ATCCGGCTAGTCAACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTC
GTGATCAAGAAGGTCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCT
GGTGGACTGGCTGCTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGG
CCGTGCTGGAGGATGTCCAGCTCAACGAAAATGTGCGATTCAAGGCCATT
CGGGATAAGCTAGTGACTTTCAAAGATGGCCGAGATGATCTGACCGATCG
CATAGACTTTATAGTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTT
CGCTGCTCTTCCAGCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGC
TCCCTCGGCTTTCTCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCT
GACCAGCGTCCTGGAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGC
GCTGTGTTATGCATCGCAGGAGCGATAGGAAACACGAGGCTAAGACTCTG
GAGGCAGATCTAGATGGTGAGGCGCGACCTGCAGCCAACAGCATACTGGT
GCTCAACGAAGTGGTCATTGAT
BO17134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-PA | 1365 | CG33156-RA | 237..843 | 16..622 | 3035 | 100 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 345..951 | 16..622 | 3035 | 100 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 234..840 | 16..622 | 3035 | 100 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 1..606 | 17..622 | 3030 | 100 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 301..392 | 17..108 | 260 | 91.3 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 385..476 | 17..108 | 260 | 91.3 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 1..92 | 17..108 | 260 | 91.3 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 601..689 | 257..345 | 195 | 88.7 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 685..773 | 257..345 | 195 | 88.7 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 301..389 | 257..345 | 195 | 88.7 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 430..485 | 149..204 | 155 | 91 | Plus |
| CG6145-PC | 1647 | CG6145-RC | 514..569 | 149..204 | 155 | 91 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 130..185 | 149..204 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1795 | CG33156-RF | 304..910 | 16..622 | 3035 | 100 | Plus |
| CG33156-RB | 1824 | CG33156-RB | 333..939 | 16..622 | 3035 | 100 | Plus |
| CG33156-RE | 2330 | CG33156-RE | 839..1445 | 16..622 | 3035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13549188..13549536 | 622..274 | 1745 | 100 | Minus |
| 2R | 25286936 | 2R | 13549599..13549856 | 273..16 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 13538625..13538855 | 504..274 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13539104..13539288 | 204..17 | 440 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:12:37 has no hits.
BO17134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:05 Download gff for
BO17134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-PB | 227..840 | 11..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:03:37 Download gff for
BO17134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 832..1445 | 11..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:43 Download gff for
BO17134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 832..1445 | 11..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:43 Download gff for
BO17134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13549599..13549863 | 11..273 | 99 | | Minus |
| 2R | 13549188..13549536 | 274..622 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:03:37 Download gff for
BO17134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436693..9437041 | 274..622 | 100 | <- | Minus |
| arm_2R | 9437104..9437368 | 11..273 | 99 | | Minus |
BO17134.complete Sequence
1159 bp assembled on 2006-10-11
GenBank Submission: FJ634037
> BO17134.complete
GAAGTTATCAGTCGACATGAAAAACTCCGCCATGGTGATGCAGATCCAGG
ATCCGGCTAGTCAACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTC
GTGATCAAGAAGGTCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCT
GGTGGACTGGCTGCTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGG
CCGTGCTGGAGGATGTCCAGCTCAACGAAAATGTGCGATTCAAGGCCATT
CGGGATAAGCTAGTGACTTTCAAAGATGGCCGAGATGATCTGACCGATCG
CATAGACTTTATAGTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTT
CGCTGCTCTTCCAGCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGC
TCCCTCGGCTTTCTCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCT
GACCAGCGTCCTGGAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGC
GCTGTGTTATGCATCGCAGGAGCGATAGGAAACACGAGGCTAAGACTCTG
GAGGCAGATCTAGATGGTGAGGCGCGACCTGCAGCCAACAGCATACTGGT
GCTCAACGAAGTGGTCATTGATCGTGGTCCATCGCCGTATCTGAGCAATA
TTGATCTGTTTCTGGACGGAAAGTATATCACGTCGGTGCAGGGCGACGGT
CTGATCGTATCGACGCCCACGGGAAGCACGGCATATGCGGCGGCGGCCGG
TGCGTCCATGATCCATCCCTCCGTGCCGGCGATTATGGTGACTCCCATCT
GCCCGCATTCGCTTAGCTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAG
CTGAAGATATCAGTATCCCCCGAGAGCCGCAACACATCGTGGGTTAGCTT
CGATGGACGCAACAGGCAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGA
CCACCTCCATTTATCCCGTGCCATGCATCTGCGCCCAGGATCAGATATCC
GACTGGTTCGCCTCCCTAGCCGACGGACTGCACTGGAATGTGCGCAAGCG
ACAGAAGTGCCTGGACGAGCTGTCGGATCTGACGGCATCCGGATCGGAGG
ATACGCTGGACGAGATCGAGAACATGAAATTGTACGATGTGGCAAGCTTT
CTAGACCAT
BO17134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1353 | CG33156-PF | 225..1350 | 16..1141 | 5630 | 100 | Plus |
| CG33156-RB | 1362 | CG33156-PB | 234..1359 | 16..1141 | 5630 | 100 | Plus |
| CG33156-RE | 1473 | CG33156-PE | 345..1470 | 16..1141 | 5630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-RF | 1795 | CG33156-RF | 304..1429 | 16..1141 | 5630 | 100 | Plus |
| CG33156-RB | 1824 | CG33156-RB | 333..1458 | 16..1141 | 5630 | 100 | Plus |
| CG33156-RE | 2330 | CG33156-RE | 839..1964 | 16..1141 | 5630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13548954..13549536 | 856..274 | 2915 | 100 | Minus |
| 2R | 25286936 | 2R | 13548610..13548896 | 1141..855 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 13549599..13549856 | 273..16 | 1290 | 100 | Minus |
| 2R | 25286936 | 2R | 13538198..13538468 | 856..586 | 770 | 85.6 | Minus |
| 2R | 25286936 | 2R | 13538625..13538855 | 504..274 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13537799..13538051 | 1107..855 | 545 | 81 | Minus |
| 2R | 25286936 | 2R | 13539104..13539288 | 204..17 | 440 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:31 has no hits.
BO17134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:57 Download gff for
BO17134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RB | 227..1362 | 11..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:17 Download gff for
BO17134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 829..1961 | 11..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:02 Download gff for
BO17134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 840..1964 | 17..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:57 Download gff for
BO17134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 829..1961 | 11..1141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:22 Download gff for
BO17134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33156-RE | 840..1964 | 17..1143 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:22 Download gff for
BO17134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13548608..13548894 | 857..1143 | 99 | <- | Minus |
| 2R | 13548954..13549536 | 274..856 | 100 | <- | Minus |
| 2R | 13549599..13549855 | 17..273 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:02 Download gff for
BO17134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9436113..9436399 | 857..1143 | 99 | <- | Minus |
| arm_2R | 9436459..9437041 | 274..856 | 100 | <- | Minus |
| arm_2R | 9437104..9437360 | 17..273 | 100 | | Minus |
BO17134.pep Sequence
Translation from 16 to 1159
> BO17134.pep
MKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKVSDASVLAPFVYLVDWLL
QEKNMVVWVESAVLEDVQLNENVRFKAIRDKLVTFKDGRDDLTDRIDFIV
CLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFRFDNFEEQLTSVLE
GHAALTLRSRLRCVMHRRSDRKHEAKTLEADLDGEARPAANSILVLNEVV
IDRGPSPYLSNIDLFLDGKYITSVQGDGLIVSTPTGSTAYAAAAGASMIH
PSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPESRNTSWVSFDGRNR
QELFHGDSLRVTTSIYPVPCICAQDQISDWFASLADGLHWNVRKRQKCLD
ELSDLTASGSEDTLDEIENMKLYDVASFLDH
BO17134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33156-PC | 375 | CG33156-PC | 1..375 | 1..375 | 1933 | 100 | Plus |
| CG33156-PF | 450 | CG33156-PF | 76..450 | 1..375 | 1933 | 100 | Plus |
| CG33156-PB | 453 | CG33156-PB | 79..453 | 1..375 | 1933 | 100 | Plus |
| CG33156-PA | 454 | CG33156-PA | 80..454 | 1..375 | 1933 | 100 | Plus |
| CG33156-PE | 490 | CG33156-PE | 116..490 | 1..375 | 1933 | 100 | Plus |
