Clone Sequence Records
BO17135.3prime Sequence
635 bp (629 high quality bases) assembled on 2006-10-13
> BO17135.3prime
ATGGTCTAGAAAGCTTGCATCCCTTGGAGTAATCTTAACCCGTAGGCCGT
CCTTGGGCCGCAGAATGAGCTCGCCCAGCAGCGTGAGATCCTCCCGGCGA
TCCACAGCCTCGATTTTGTACTTCCTCAAAACCGTGGAAATCACGGCCTT
CTCCTCCAGAATGGCGAACTTCTGGCCAATGCAGTTACGCGGTCCTGCGC
TAAAGGGTATATAGGCGAAGGGATGGCGTCCGGCGCAGTTTTCCGGCAGG
AAATTGTCCGGATTGAACTGCTCCGGCTTGGGGAAGACGCGCGGATTGCG
GTGCAGGGCGTAGGTCATAATGATGGCCTGAGTTCCGGCGGGCACGATTT
TTCCACCAATGTTCACATCCTCGCCCACCATCCTAGCCATCATTGGGACA
CTGGGAAACAGGCGCAGCGAGTCCTTGATGCAGCACTCCAGGTATCGCAT
ATCCATAAGGTTCTTCATGGTGGCCGGCGTCTCCTTGTCATCGCCGAAGA
TAGAGTCCAGTTCCTCCACCACGCGCTCCTGGTACTCTGGGTGGCAGCCC
AGCAAAAATAGTGTCCAGGAAATGGCCGCAGAGGTGGTGTCGTGGCCCTC
GAACATAAAGGTGTCTACCTCCTCGCGAATGTCCT
BO17135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1438-PA | 1608 | Cyp4c3-RA | 989..1605 | 635..19 | 3085 | 100 | Minus |
CG3656-PB | 1512 | Cyp4d1-RB | 885..945 | 634..574 | 205 | 93.4 | Minus |
CG3656-PA | 1539 | Cyp4d1-RA | 912..972 | 634..574 | 205 | 93.4 | Minus |
CG16761-PA | 1533 | Cyp4d20-RA | 919..963 | 627..583 | 150 | 93.3 | Minus |
CG3656-PB | 1512 | Cyp4d1-RB | 1336..1368 | 186..154 | 140 | 96.9 | Minus |
CG3656-PA | 1539 | Cyp4d1-RA | 1363..1395 | 186..154 | 140 | 96.9 | Minus |
CG3540-PA | 1524 | Cyp4d14-RA | 910..947 | 633..596 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-RA | 1906 | CG1438-RA | 1122..1738 | 635..19 | 3085 | 100 | Minus |
Cyp4d1-RA | 1685 | CG3656-RA | 988..1048 | 634..574 | 245 | 93.4 | Minus |
Cyp4d1-RB | 1644 | CG3656-RB | 947..1007 | 634..574 | 245 | 93.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30900178..30900520 | 361..19 | 1700 | 99.7 | Minus |
3R | 32079331 | 3R | 30899847..30900127 | 635..355 | 1405 | 100 | Minus |
X | 23542271 | X | 2159842..2159902 | 574..634 | 245 | 93.4 | Plus |
3L | 28110227 | 3L | 2476973..2477024 | 583..634 | 185 | 90.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:32:29 has no hits.
BO17135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:07 Download gff for
BO17135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1438-PA | 989..1608 | 15..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:00:53 Download gff for
BO17135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 1122..1742 | 14..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:54:00 Download gff for
BO17135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 1122..1742 | 14..635 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:54:00 Download gff for
BO17135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30899847..30900125 | 357..635 | 100 | -> | Minus |
3R | 30900183..30900524 | 14..356 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:00:53 Download gff for
BO17135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26725569..26725847 | 357..635 | 100 | -> | Minus |
arm_3R | 26725905..26726246 | 14..356 | 99 | | Minus |
BO17135.5prime Sequence
678 bp (563 high quality bases) assembled on 2006-10-13
> BO17135.5prime
GAAGTTATCAGTCGACATGTCCTCGAAAGTGATAACCTCGTTAATGGCCG
AGAGCATACTGCTCTCAAAAGTGGGCCAAGTGATATCCGGCTACTCGCCG
ATCACGGTTTTTCTCCTTGGATCCATTCTAATTTTCCTCGTAGTCTACAA
CAAGCGCCGATCCCGACTGGTGAAGTACATCGAAAAGATCCCGGGACCTG
CGGCCATGCCCTTCCTGGGCAACGCCATCGAAATGAATGTGGATCACGAC
GAGCTCTTTAACCGCGTCATCGGCATGCAAAAGTTGTGGGGCACGCGTAT
CGGAATCAATCGCGTTTGGCAGGGAACAGCTCCAAGGGTGCTCCTCTTCG
AGCCTGAGACCGTGGAGCCCATACTGAACAGCCAGAAGTTTGTGAACAAG
AGCCACGACTACGACTATCTGCATCCTTGGTTGGGAGAGGGTCTGCTTAC
CAGCACAGATCGCAAGTGGCACTCCCGCAGGAAGATCCTCACACCTGCCT
TCCACTTCAAAATCTTGGACGATTTCATCGACGTTTTCAATGAGCAGAGC
GCAGTCTTGGCCAGAAAATTGGCGGTGGAGGTGGGCAGCGAGGCGTTCAA
CCTGTTCCCCTACGTCACGCTCTGCACCTTGGACATTGTTTGTGAAACCG
CCATGGGTCGCAGAATTTACGCCCAGAG
BO17135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1438-PA | 1608 | Cyp4c3-RA | 1..662 | 17..678 | 3310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-RA | 1906 | CG1438-RA | 134..795 | 17..678 | 3310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30894171..30894405 | 17..251 | 1175 | 100 | Plus |
3R | 32079331 | 3R | 30897861..30898022 | 483..644 | 810 | 100 | Plus |
3R | 32079331 | 3R | 30897678..30897796 | 366..484 | 595 | 100 | Plus |
3R | 32079331 | 3R | 30897502..30897618 | 251..367 | 585 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 07:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1490..1528 | 503..541 | 114 | 76.9 | Plus |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 1635..1670 | 506..541 | 108 | 77.8 | Plus |
BO17135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:08 Download gff for
BO17135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1438-PA | 1..662 | 17..678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:07:49 Download gff for
BO17135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 125..795 | 8..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:15:56 Download gff for
BO17135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 125..795 | 8..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:15:56 Download gff for
BO17135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30894162..30894405 | 8..251 | 98 | -> | Plus |
3R | 30897503..30897618 | 252..367 | 100 | -> | Plus |
3R | 30897680..30897796 | 368..484 | 100 | -> | Plus |
3R | 30897863..30898022 | 485..644 | 100 | -> | Plus |
3R | 30898112..30898145 | 645..678 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:07:49 Download gff for
BO17135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26719884..26720127 | 8..251 | 98 | -> | Plus |
arm_3R | 26723225..26723340 | 252..367 | 100 | -> | Plus |
arm_3R | 26723402..26723518 | 368..484 | 100 | -> | Plus |
arm_3R | 26723585..26723744 | 485..644 | 100 | -> | Plus |
arm_3R | 26723834..26723867 | 645..678 | 100 | | Plus |
BO17135.complete Sequence
1639 bp assembled on 2007-03-23
GenBank Submission: FJ634038
> BO17135.complete
GAAGTTATCAGTCGACATGTCCTCGAAAGTGATAACCTCGTTAATGGCCG
AGAGCATACTGCTCTCAAAAGTGGGCCAAGTGATATCCGGCTACTCGCCG
ATCACGGTTTTTCTCCTTGGATCCATTCTAATTTTCCTCGTAGTCTACAA
CAAGCGCCGATCCCGACTGGTGAAGTACATCGAAAAGATCCCGGGACCTG
CGGCCATGCCCTTCCTGGGCAACGCCATCGAAATGAATGTGGATCACGAC
GAGCTCTTTAACCGCGTCATCGGCATGCAAAAGTTGTGGGGCACGCGTAT
CGGAATCAATCGCGTTTGGCAGGGAACAGCTCCAAGGGTGCTCCTCTTCG
AGCCTGAGACCGTGGAGCCCATACTGAACAGCCAGAAGTTTGTGAACAAG
AGCCACGACTACGACTATCTGCATCCTTGGTTGGGAGAGGGTCTGCTTAC
CAGCACAGATCGCAAGTGGCACTCCCGCAGGAAGATCCTCACACCTGCCT
TCCACTTCAAAATCTTGGACGATTTCATCGACGTTTTCAATGAGCAGAGC
GCAGTCTTGGCCAGAAAATTGGCGGTGGAGGTGGGCAGCGAGGCGTTCAA
CCTGTTCCCCTACGTCACGCTCTGCACCTTGGACATTGTTTGTGAAACCG
CCATGGGTCGCAGAATTTACGCCCAGAGCAATAGTGAATCGGAGTATGTG
AAGGCGGTCTATGGCATTGGATCGATTGTACAGAGTCGGCAGGCGAAGAT
TTGGCTGCAGAGCGACTTCATTTTCAGCCTGACCGCGGAGTACAAGCTCC
ACCAGAGCTACATAAACACCCTGCATGGATTTTCCAACATGGTGATCCGC
GAGCGAAAGGCTGAGTTGGCCATTCTCCAGGAGAACAATAACAACAATAA
TAATAACGCCCCCGATGCCTATGATGACGTGGGAAAGAAGAAGCGCCTGG
CCTTCCTGGACCTTCTCATCGATGCCTCTAAGGAAGGAACTGTTCTTTCT
AATGAGGACATTCGCGAGGAGGTAGACACCTTTATGTTCGAGGGCCACGA
CACCACCTCTGCGGCCATTTCCTGGACACTATTTTTGCTGGGCTGCCACC
CAGAGTACCAGGAGCGCGTGGTGGAGGAACTGGACTCTATCTTCGGCGAT
GACAAGGAGACGCCGGCCACCATGAAGAACCTTATGGATATGCGATACCT
GGAGTGCTGCATCAAGGACTCGCTGCGCCTGTTTCCCAGTGTCCCAATGA
TGGCTAGGATGGTGGGCGAGGATGTGAACATTGGTGGAAAAATCGTGCCC
GCCGGAACTCAGGCCATCATTATGACCTACGCCCTGCACCGCAATCCGCG
CGTCTTCCCCAAGCCGGAGCAGTTCAATCCGGACAATTTCCTGCCGGAAA
ACTGCGCCGGACGCCATCCCTTCGCCTATATACCCTTTAGCGCAGGACCG
CGTAACTGCATTGGCCAGAAGTTCGCCATTCTGGAGGAGAAGGCCGTGAT
TTCCACGGTTTTGAGGAAGTACAAAATCGAGGCTGTGGATCGCCGGGAGG
ATCTCACGCTGCTGGGCGAGCTCATTCTGCGGCCCAAGGACGGCCTACGG
GTTAAGATTACTCCAAGGGATGCAAGCTTTCTAGACCAT
BO17135.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-RA | 1608 | CG1438-PA | 1..1605 | 17..1621 | 8025 | 100 | Plus |
Cyp4d1-RA | 1539 | CG3656-PA | 912..972 | 1006..1066 | 245 | 93.4 | Plus |
Cyp4d1-RB | 1512 | CG3656-PB | 885..945 | 1006..1066 | 245 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-RA | 1906 | CG1438-RA | 134..1738 | 17..1621 | 8025 | 100 | Plus |
Cyp4d1-RA | 1685 | CG3656-RA | 988..1048 | 1006..1066 | 245 | 93.4 | Plus |
Cyp4d1-RB | 1644 | CG3656-RB | 947..1007 | 1006..1066 | 245 | 93.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30900178..30900520 | 1279..1621 | 1700 | 99.7 | Plus |
3R | 32079331 | 3R | 30899495..30899785 | 714..1004 | 1455 | 100 | Plus |
3R | 32079331 | 3R | 30899846..30900127 | 1004..1285 | 1410 | 100 | Plus |
3R | 32079331 | 3R | 30894171..30894405 | 17..251 | 1175 | 100 | Plus |
3R | 32079331 | 3R | 30897861..30898022 | 483..644 | 810 | 100 | Plus |
3R | 32079331 | 3R | 30897678..30897796 | 366..484 | 595 | 100 | Plus |
3R | 32079331 | 3R | 30897502..30897618 | 251..367 | 585 | 100 | Plus |
3R | 32079331 | 3R | 30898111..30898181 | 644..714 | 355 | 100 | Plus |
X | 23542271 | X | 2159842..2159902 | 1066..1006 | 245 | 93.4 | Minus |
3L | 28110227 | 3L | 2476973..2477028 | 1057..1002 | 190 | 89.3 | Minus |
Blast to na_te.dros performed 2014-11-27 16:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker | 7256 | Stalker STALKER 7256bp | 2761..2791 | 877..907 | 119 | 87.1 | Plus |
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1490..1528 | 503..541 | 114 | 76.9 | Plus |
BO17135.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:45 Download gff for
BO17135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 1..1608 | 17..1625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:38 Download gff for
BO17135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 202..1819 | 8..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:27 Download gff for
BO17135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 134..1738 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:46 Download gff for
BO17135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 202..1819 | 8..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:18 Download gff for
BO17135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4c3-RA | 134..1738 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:18 Download gff for
BO17135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30897863..30898022 | 485..644 | 100 | -> | Plus |
3R | 30898112..30898181 | 645..714 | 100 | -> | Plus |
3R | 30899496..30899784 | 715..1003 | 100 | -> | Plus |
3R | 30899846..30900125 | 1004..1283 | 100 | -> | Plus |
3R | 30900183..30900520 | 1284..1623 | 99 | | Plus |
3R | 30894171..30894405 | 17..251 | 100 | -> | Plus |
3R | 30897503..30897618 | 252..367 | 100 | -> | Plus |
3R | 30897680..30897796 | 368..484 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:27 Download gff for
BO17135.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26719893..26720127 | 17..251 | 100 | -> | Plus |
arm_3R | 26723225..26723340 | 252..367 | 100 | -> | Plus |
arm_3R | 26723402..26723518 | 368..484 | 100 | -> | Plus |
arm_3R | 26723585..26723744 | 485..644 | 100 | -> | Plus |
arm_3R | 26723834..26723903 | 645..714 | 100 | -> | Plus |
arm_3R | 26725218..26725506 | 715..1003 | 100 | -> | Plus |
arm_3R | 26725568..26725847 | 1004..1283 | 100 | -> | Plus |
arm_3R | 26725905..26726242 | 1284..1623 | 99 | | Plus |
BO17135.pep Sequence
Translation from 16 to 1639
> BO17135.pep
MSSKVITSLMAESILLSKVGQVISGYSPITVFLLGSILIFLVVYNKRRSR
LVKYIEKIPGPAAMPFLGNAIEMNVDHDELFNRVIGMQKLWGTRIGINRV
WQGTAPRVLLFEPETVEPILNSQKFVNKSHDYDYLHPWLGEGLLTSTDRK
WHSRRKILTPAFHFKILDDFIDVFNEQSAVLARKLAVEVGSEAFNLFPYV
TLCTLDIVCETAMGRRIYAQSNSESEYVKAVYGIGSIVQSRQAKIWLQSD
FIFSLTAEYKLHQSYINTLHGFSNMVIRERKAELAILQENNNNNNNNAPD
AYDDVGKKKRLAFLDLLIDASKEGTVLSNEDIREEVDTFMFEGHDTTSAA
ISWTLFLLGCHPEYQERVVEELDSIFGDDKETPATMKNLMDMRYLECCIK
DSLRLFPSVPMMARMVGEDVNIGGKIVPAGTQAIIMTYALHRNPRVFPKP
EQFNPDNFLPENCAGRHPFAYIPFSAGPRNCIGQKFAILEEKAVISTVLR
KYKIEAVDRREDLTLLGELILRPKDGLRVKITPRDASFLDH
BO17135.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4c3-PA | 535 | CG1438-PA | 1..535 | 1..535 | 2773 | 100 | Plus |
Cyp4d1-PA | 512 | CG3656-PA | 5..510 | 29..534 | 1028 | 41.2 | Plus |
Cyp4d1-PB | 503 | CG3656-PB | 1..501 | 31..534 | 1025 | 42 | Plus |
Cyp4d2-PB | 501 | CG3466-PB | 31..500 | 58..534 | 978 | 41.6 | Plus |
Cyp4d2-PA | 501 | CG3466-PA | 31..500 | 58..534 | 978 | 41.6 | Plus |