Clone Sequence Records
BO17136.3prime Sequence
633 bp (545 high quality bases) assembled on 2006-10-13
> BO17136.3prime
ATGGTCTAGAAAGCTTGCGACGCGCGGCAGTAGCTTCTCCTCATCGCCGC
CAGGACCGTGCATAGTTGGCTTCGGCGCCGACCTGGCCGGATCGTAGCCG
TAGAGAAAGATGGAGGCGATGACCAGGCCAGCTCCGAAGCTGAACTGCAG
CGTGAGATTGAAGTCGAAGATGTATATGGAGGCCACGCACGAGATGATGA
TGGCCAGCGAGGTGGCGAAGCCCTTGAGAATGTTATCCGCGTACTTGACC
ACCACGGCAACGATCAATCCACCGCCGGCCTGCAGCAGGACCAGGTACCA
GACAAACAGATCGTAGCCCTTGAAGAATCCCTGGTCGAAGATCCTACTGC
CGTCGTTAACGAAACAGGTGAGCAGGCCGAAGGGAATGCTGAGCAGACTC
AACTGCACATTCCTCATCCACACGGAGATCTCGGCACCCTTGAGGATCTT
CTCAAAGTAGATGCCCGCGAATCCGGAGAGGAAGCAGGCGCCCAGTGCGG
CCCACAGTCCGAGCATCCTGTTCTGCTCGGGAGCACCGCCAGAGGAGGCG
GCCGTGGCTGCAGCTGCGGCACCACCGGCTGAGCCACTCGTCGGACCCTC
CGTTTGGGCCAACTGCACCAGGACGATGCCCAT
BO17136.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2675-PA | 1074 | Csat-RA | 457..1071 | 633..19 | 2975 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-RC | 2120 | CG2675-RC | 789..1403 | 633..19 | 3015 | 99.3 | Minus |
Csat-RB | 2110 | CG2675-RB | 779..1393 | 633..19 | 3015 | 99.3 | Minus |
Csat-RA | 2013 | CG2675-RA | 682..1296 | 633..19 | 3015 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2701841..2702455 | 19..633 | 3015 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:01:10 has no hits.
BO17136.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:08 Download gff for
BO17136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2675-PA | 457..1074 | 18..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:03 Download gff for
BO17136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 682..1301 | 12..633 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:35 Download gff for
BO17136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 682..1301 | 12..633 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:35 Download gff for
BO17136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2701836..2702455 | 12..633 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:03 Download gff for
BO17136.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2595869..2596488 | 12..633 | 98 | | Plus |
BO17136.5prime Sequence
694 bp (581 high quality bases) assembled on 2006-10-13
> BO17136.5prime
GAAGTTATCAGTCGACATGAATAGCATACACATGAACGCCAATACGCTGA
AGTACATCAGCCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTC
AGCATGCGCTACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCAC
GGCCGTACTCATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGG
TCTTCAACGAGGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCAC
AAGACCATCATTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTC
GCTGGTCTATATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATT
TGGATGCGGCCACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACG
GCCATGTTCGCGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTG
GGGTGCGCTGCTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCC
AAACGGAGGGTCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCC
ACGGCCGCCTCCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACT
GTGGGCCGCACTGGGCGCCTGCTTCCTCTCGGGATTCGCGGGCATCTACT
TTGAGAAGATCCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGG
BO17136.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2675-PA | 1074 | Csat-RA | 1..675 | 17..691 | 3275 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-RC | 2120 | CG2675-RC | 332..1007 | 16..691 | 3320 | 99.4 | Plus |
Csat-RA | 2013 | CG2675-RA | 225..900 | 16..691 | 3320 | 99.4 | Plus |
Csat-RB | 2110 | CG2675-RB | 339..997 | 33..691 | 3235 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2702237..2702776 | 691..152 | 2640 | 99.3 | Minus |
X | 23542271 | X | 2703288..2703407 | 152..33 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:01:47 has no hits.
BO17136.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:09 Download gff for
BO17136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2675-PA | 1..678 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:09 Download gff for
BO17136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 220..903 | 10..694 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:40 Download gff for
BO17136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 220..903 | 10..694 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:40 Download gff for
BO17136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2702234..2702775 | 153..694 | 99 | <- | Minus |
X | 2703288..2703407 | 33..152 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:09 Download gff for
BO17136.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2596267..2596808 | 153..694 | 99 | <- | Minus |
arm_X | 2597321..2597440 | 33..152 | 100 | <- | Minus |
BO17136.complete Sequence
1105 bp assembled on 2006-10-11
GenBank Submission: FJ634039
> BO17136.complete
GAAGTTATCAGTCGACATGAATAGCATACACATGAACGCCAATACGCTGA
AGTACATCAGCCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTC
AGCATGCGCTACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCAC
GGCCGTACTCATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGG
TCTTCAACGAGGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCAC
AAGACCATCATTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTC
GCTGGTCTATATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATT
TGGATGCGGCCACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACG
GCCATGTTCGCGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTG
GGGTGCGCTGCTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCC
AAACGGAGGGTCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCC
ACGGCCGCCTCCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACT
GTGGGCCGCACTGGGCGCCTGCTTCCTCTCCGGATTCGCGGGCATCTACT
TTGAGAAGATCCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGGAATGTG
CAGTTGAGTCTGCTCAGCATTCCCTTCGGCCTGCTCACCTGTTTCGTTAA
CGACGGCAGTAGGATCTTCGACCAGGGATTCTTCAAGGGCTACGATCTGT
TTGTCTGGTACCTGGTCCTGCTGCAGGCCGGCGGTGGATTGATCGTTGCC
GTGGTGGTCAAGTACGCGGATAACATTCTCAAGGGCTTCGCCACCTCGCT
GGCCATCATCATCTCGTGCGTGGCCTCCATATACATCTTCGACTTCAATC
TCACGCTGCAGTTCAGCTTCGGAGCTGGCCTGGTCATCGCCTCCATCTTT
CTCTACGGCTACGATCCGGCCAGGTCGGCGCCGAAGCCAACTATGCACGG
TCCTGGCGGCGATGAGGAGAAGCTACTGCCGCGCGTCGCAAGCTTTCTAG
ACCAT
BO17136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-RC | 1074 | CG2675-PC | 1..1071 | 17..1087 | 5250 | 99.3 | Plus |
Csat-RA | 1074 | CG2675-PA | 1..1071 | 17..1087 | 5250 | 99.3 | Plus |
Csat-RB | 1107 | CG2675-PB | 50..1104 | 33..1087 | 5170 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-RC | 2120 | CG2675-RC | 332..1403 | 16..1087 | 5255 | 99.3 | Plus |
Csat-RA | 2013 | CG2675-RA | 225..1296 | 16..1087 | 5255 | 99.3 | Plus |
Csat-RB | 2110 | CG2675-RB | 339..1393 | 33..1087 | 5170 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2701841..2702776 | 1087..152 | 4575 | 99.3 | Minus |
X | 23542271 | X | 2703288..2703407 | 152..33 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:00:34 has no hits.
BO17136.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:58 Download gff for
BO17136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 1..1074 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:19 Download gff for
BO17136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 251..1332 | 10..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:03 Download gff for
BO17136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 226..1296 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:58 Download gff for
BO17136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 251..1332 | 10..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:17 Download gff for
BO17136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 226..1296 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:17 Download gff for
BO17136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2701837..2702775 | 153..1089 | 99 | <- | Minus |
X | 2703288..2703407 | 33..152 | 100 | <- | Minus |
X | 2703505..2703520 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:03 Download gff for
BO17136.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2595870..2596808 | 153..1089 | 99 | <- | Minus |
arm_X | 2597321..2597440 | 33..152 | 100 | <- | Minus |
arm_X | 2597538..2597553 | 17..32 | 100 | | Minus |
BO17136.pep Sequence
Translation from 16 to 1105
> BO17136.pep
MNSIHMNANTLKYISLLTLTLQNAILGLSMRYARTRPGDIFLSSTAVLMA
EFAKLITCLFLVFNEEGKDAQKFVRSLHKTIIANPMDTLKVCVPSLVYIV
QNNLLYVSASHLDAATYQVTYQLKILTTAMFAVVILRRKLLNTQWGALLL
LVMGIVLVQLAQTEGPTSGSAGGAAAAATAASSGGAPEQNRMLGLWAALG
ACFLSGFAGIYFEKILKGAEISVWMRNVQLSLLSIPFGLLTCFVNDGSRI
FDQGFFKGYDLFVWYLVLLQAGGGLIVAVVVKYADNILKGFATSLAIIIS
CVASIYIFDFNLTLQFSFGAGLVIASIFLYGYDPARSAPKPTMHGPGGDE
EKLLPRVASFLDH
BO17136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-PC | 357 | CG2675-PC | 1..357 | 1..357 | 1799 | 100 | Plus |
Csat-PA | 357 | CG2675-PA | 1..357 | 1..357 | 1799 | 100 | Plus |
Csat-PB | 368 | CG2675-PB | 17..368 | 6..357 | 1768 | 99.7 | Plus |
CG14040-PA | 388 | CG14040-PA | 48..349 | 45..334 | 229 | 25.9 | Plus |