Clone BO17136 Report

Search the DGRC for BO17136

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCsat-RA
Protein status:BO17136.pep: validated full length
Sequenced Size:1105

Clone Sequence Records

BO17136.3prime Sequence

633 bp (545 high quality bases) assembled on 2006-10-13

> BO17136.3prime
ATGGTCTAGAAAGCTTGCGACGCGCGGCAGTAGCTTCTCCTCATCGCCGC
CAGGACCGTGCATAGTTGGCTTCGGCGCCGACCTGGCCGGATCGTAGCCG
TAGAGAAAGATGGAGGCGATGACCAGGCCAGCTCCGAAGCTGAACTGCAG
CGTGAGATTGAAGTCGAAGATGTATATGGAGGCCACGCACGAGATGATGA
TGGCCAGCGAGGTGGCGAAGCCCTTGAGAATGTTATCCGCGTACTTGACC
ACCACGGCAACGATCAATCCACCGCCGGCCTGCAGCAGGACCAGGTACCA
GACAAACAGATCGTAGCCCTTGAAGAATCCCTGGTCGAAGATCCTACTGC
CGTCGTTAACGAAACAGGTGAGCAGGCCGAAGGGAATGCTGAGCAGACTC
AACTGCACATTCCTCATCCACACGGAGATCTCGGCACCCTTGAGGATCTT
CTCAAAGTAGATGCCCGCGAATCCGGAGAGGAAGCAGGCGCCCAGTGCGG
CCCACAGTCCGAGCATCCTGTTCTGCTCGGGAGCACCGCCAGAGGAGGCG
GCCGTGGCTGCAGCTGCGGCACCACCGGCTGAGCCACTCGTCGGACCCTC
CGTTTGGGCCAACTGCACCAGGACGATGCCCAT

BO17136.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2675-PA 1074 Csat-RA 457..1071 633..19 2975 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-RC 2120 CG2675-RC 789..1403 633..19 3015 99.3 Minus
Csat-RB 2110 CG2675-RB 779..1393 633..19 3015 99.3 Minus
Csat-RA 2013 CG2675-RA 682..1296 633..19 3015 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2701841..2702455 19..633 3015 99.3 Plus
Blast to na_te.dros performed on 2015-01-30 18:01:10 has no hits.

BO17136.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:08 Download gff for BO17136.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2675-PA 457..1074 18..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:03 Download gff for BO17136.3prime
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 682..1301 12..633 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:35 Download gff for BO17136.3prime
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 682..1301 12..633 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:35 Download gff for BO17136.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2701836..2702455 12..633 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:03 Download gff for BO17136.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2595869..2596488 12..633 98   Plus

BO17136.5prime Sequence

694 bp (581 high quality bases) assembled on 2006-10-13

> BO17136.5prime
GAAGTTATCAGTCGACATGAATAGCATACACATGAACGCCAATACGCTGA
AGTACATCAGCCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTC
AGCATGCGCTACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCAC
GGCCGTACTCATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGG
TCTTCAACGAGGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCAC
AAGACCATCATTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTC
GCTGGTCTATATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATT
TGGATGCGGCCACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACG
GCCATGTTCGCGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTG
GGGTGCGCTGCTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCC
AAACGGAGGGTCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCC
ACGGCCGCCTCCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACT
GTGGGCCGCACTGGGCGCCTGCTTCCTCTCGGGATTCGCGGGCATCTACT
TTGAGAAGATCCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGG

BO17136.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2675-PA 1074 Csat-RA 1..675 17..691 3275 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-RC 2120 CG2675-RC 332..1007 16..691 3320 99.4 Plus
Csat-RA 2013 CG2675-RA 225..900 16..691 3320 99.4 Plus
Csat-RB 2110 CG2675-RB 339..997 33..691 3235 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2702237..2702776 691..152 2640 99.3 Minus
X 23542271 X 2703288..2703407 152..33 600 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:01:47 has no hits.

BO17136.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:09 Download gff for BO17136.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2675-PA 1..678 17..694 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:09 Download gff for BO17136.5prime
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 220..903 10..694 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:40 Download gff for BO17136.5prime
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 220..903 10..694 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:40 Download gff for BO17136.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2702234..2702775 153..694 99 <- Minus
X 2703288..2703407 33..152 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:09 Download gff for BO17136.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2596267..2596808 153..694 99 <- Minus
arm_X 2597321..2597440 33..152 100 <- Minus

BO17136.complete Sequence

1105 bp assembled on 2006-10-11

GenBank Submission: FJ634039

> BO17136.complete
GAAGTTATCAGTCGACATGAATAGCATACACATGAACGCCAATACGCTGA
AGTACATCAGCCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTC
AGCATGCGCTACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCAC
GGCCGTACTCATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGG
TCTTCAACGAGGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCAC
AAGACCATCATTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTC
GCTGGTCTATATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATT
TGGATGCGGCCACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACG
GCCATGTTCGCGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTG
GGGTGCGCTGCTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCC
AAACGGAGGGTCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCC
ACGGCCGCCTCCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACT
GTGGGCCGCACTGGGCGCCTGCTTCCTCTCCGGATTCGCGGGCATCTACT
TTGAGAAGATCCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGGAATGTG
CAGTTGAGTCTGCTCAGCATTCCCTTCGGCCTGCTCACCTGTTTCGTTAA
CGACGGCAGTAGGATCTTCGACCAGGGATTCTTCAAGGGCTACGATCTGT
TTGTCTGGTACCTGGTCCTGCTGCAGGCCGGCGGTGGATTGATCGTTGCC
GTGGTGGTCAAGTACGCGGATAACATTCTCAAGGGCTTCGCCACCTCGCT
GGCCATCATCATCTCGTGCGTGGCCTCCATATACATCTTCGACTTCAATC
TCACGCTGCAGTTCAGCTTCGGAGCTGGCCTGGTCATCGCCTCCATCTTT
CTCTACGGCTACGATCCGGCCAGGTCGGCGCCGAAGCCAACTATGCACGG
TCCTGGCGGCGATGAGGAGAAGCTACTGCCGCGCGTCGCAAGCTTTCTAG
ACCAT

BO17136.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-RC 1074 CG2675-PC 1..1071 17..1087 5250 99.3 Plus
Csat-RA 1074 CG2675-PA 1..1071 17..1087 5250 99.3 Plus
Csat-RB 1107 CG2675-PB 50..1104 33..1087 5170 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-RC 2120 CG2675-RC 332..1403 16..1087 5255 99.3 Plus
Csat-RA 2013 CG2675-RA 225..1296 16..1087 5255 99.3 Plus
Csat-RB 2110 CG2675-RB 339..1393 33..1087 5170 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2701841..2702776 1087..152 4575 99.3 Minus
X 23542271 X 2703288..2703407 152..33 600 100 Minus
Blast to na_te.dros performed on 2014-11-27 17:00:34 has no hits.

BO17136.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:58 Download gff for BO17136.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..1074 17..1088 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:19 Download gff for BO17136.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 251..1332 10..1094 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:03 Download gff for BO17136.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 226..1296 17..1089 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:58 Download gff for BO17136.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 251..1332 10..1094 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:17 Download gff for BO17136.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 226..1296 17..1089 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:17 Download gff for BO17136.complete
Subject Subject Range Query Range Percent Splice Strand
X 2701837..2702775 153..1089 99 <- Minus
X 2703288..2703407 33..152 100 <- Minus
X 2703505..2703520 17..32 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:03 Download gff for BO17136.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2595870..2596808 153..1089 99 <- Minus
arm_X 2597321..2597440 33..152 100 <- Minus
arm_X 2597538..2597553 17..32 100   Minus

BO17136.pep Sequence

Translation from 16 to 1105

> BO17136.pep
MNSIHMNANTLKYISLLTLTLQNAILGLSMRYARTRPGDIFLSSTAVLMA
EFAKLITCLFLVFNEEGKDAQKFVRSLHKTIIANPMDTLKVCVPSLVYIV
QNNLLYVSASHLDAATYQVTYQLKILTTAMFAVVILRRKLLNTQWGALLL
LVMGIVLVQLAQTEGPTSGSAGGAAAAATAASSGGAPEQNRMLGLWAALG
ACFLSGFAGIYFEKILKGAEISVWMRNVQLSLLSIPFGLLTCFVNDGSRI
FDQGFFKGYDLFVWYLVLLQAGGGLIVAVVVKYADNILKGFATSLAIIIS
CVASIYIFDFNLTLQFSFGAGLVIASIFLYGYDPARSAPKPTMHGPGGDE
EKLLPRVASFLDH

BO17136.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-PC 357 CG2675-PC 1..357 1..357 1799 100 Plus
Csat-PA 357 CG2675-PA 1..357 1..357 1799 100 Plus
Csat-PB 368 CG2675-PB 17..368 6..357 1768 99.7 Plus
CG14040-PA 388 CG14040-PA 48..349 45..334 229 25.9 Plus