Clone Sequence Records
BO17137.3prime Sequence
604 bp (601 high quality bases) assembled on 2006-10-13
> BO17137.3prime
ATGGTCTAGAAAGCTTGCCATGTTGAAGGACAATGGCTTGATATTGGCCA
CCGAGGACATGCGGCGCACACGGCCCATCATCTTCCGCTCGATGTCCTCC
AGCGTCTTGCCCTGCGTTTCGGGCACGTAGATTATCACAAAGAACAGACC
CACGAAGCAGATGGCGCCGAATAGCCAGAACGCTCCATGCGCGCCCATAG
CAACCGTGAGGTCCTGGAAGGTCTTGGTCACCACAAACGTGCAGAACCAG
TTGAAAGCCGTGGCCACCGAGGCAGCCGATCCGCGAATTTTGGCCGGCAG
AATCTCACCCATCATCAGCCAGGGAATGGGTCCGAAGCCCAGGGAGAATC
CCAGAATGTAGATGACGAAGCAAGTGAGTGGCAACCAACCCAAATGGGAC
ACATCCGGACCGTACGTCTTGCAGTAGAAGAAGCCGCCCAGAACGAACAG
GGTCAGAACCATGGCGATGTCGGAGACATATAGAAGAATCTTTCTGCCCG
CCCGATCAATCAGAACGATGCCTATAAACGTAGCCAAAAAGTTAACAATT
CCCACAATGATCGTGCAGAGATTGCCATCAATGGTGGATCCCCGCATCCT
TGAA
BO17137.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30035-PA | 2574 | CG30035-RA | 1987..2571 | 604..19 | 2890 | 99.8 | Minus |
| CG30035-PB | 1470 | CG30035-RB | 883..1467 | 604..19 | 2890 | 99.8 | Minus |
| CG8234-PB | 1302 | CG8234-RB | 718..1187 | 604..134 | 1490 | 92.7 | Minus |
| CG8234-PA | 1467 | CG8234-RA | 883..1352 | 604..134 | 1490 | 92.7 | Minus |
| CG8234-PB | 1302 | CG8234-RB | 1195..1255 | 126..66 | 155 | 90.1 | Minus |
| CG8234-PA | 1467 | CG8234-RA | 1360..1420 | 126..66 | 155 | 90.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-1-RB | 1980 | CG30035-RB | 1042..1626 | 604..19 | 2905 | 99.8 | Minus |
| Tret1-1-RA | 3132 | CG30035-RA | 2194..2778 | 604..19 | 2905 | 99.8 | Minus |
| Tret1-2-RA | 1695 | CG8234-RA | 995..1576 | 604..19 | 2120 | 91.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11673888..11674179 | 491..200 | 1445 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11677366..11677657 | 491..200 | 1175 | 93.5 | Minus |
| 2R | 25286936 | 2R | 11674243..11674428 | 204..19 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 11677713..11677895 | 204..19 | 580 | 88.7 | Minus |
| 2R | 25286936 | 2R | 11673717..11673830 | 604..490 | 525 | 99.1 | Minus |
| 2R | 25286936 | 2R | 11677198..11677311 | 604..490 | 330 | 87.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:52:45 has no hits.
BO17137.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:10 Download gff for
BO17137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30035-PB | 885..1470 | 15..602 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:12:18 Download gff for
BO17137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RA | 2194..2781 | 15..604 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:59:14 Download gff for
BO17137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RA | 2194..2781 | 15..604 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:59:14 Download gff for
BO17137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11673717..11673830 | 490..604 | 99 | -> | Minus |
| 2R | 11673890..11674175 | 204..489 | 100 | -> | Minus |
| 2R | 11674244..11674431 | 15..203 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:12:18 Download gff for
BO17137.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7561222..7561335 | 490..604 | 99 | -> | Minus |
| arm_2R | 7561395..7561680 | 204..489 | 100 | -> | Minus |
| arm_2R | 7561749..7561936 | 15..203 | 98 | | Minus |
BO17137.5prime Sequence
628 bp (626 high quality bases) assembled on 2006-10-13
> BO17137.5prime
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGTCGAGGAGCCCAAGGCCATTTGTACCTTCTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGGGCTCCCTAGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCTCTTGTGTCGATGACCGATCGGAATATCA
CCTCGTTTGAGGTCACCCAAGATGCTGGTTCTTGGGTTGGTGGCATCATG
CCGCTGGCTGGATTGGCAGGTGGCATAGCCGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAACACCATCCTGGCCACTGCGGTGCCCTTCATTGTCT
CATCACTACTGATTGCCTGTGCTGTGAATGTGGCTATGGTTCTGTGCGGA
CGATTCCTGGCTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTACCTGGGTGAAACTGTGCAGCCTGAGGTGCGAGGCACTTTGGGTTTGC
TGCCCACGGCCTTTGGTAACATAGGCATCCTGCTCTGCTTCGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTAATGTTCCTTATT
BO17137.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30035-PB | 1470 | CG30035-RB | 1..612 | 17..628 | 3060 | 100 | Plus |
| CG30035-PA | 2574 | CG30035-RA | 1186..1716 | 98..628 | 2655 | 100 | Plus |
| CG8234-PA | 1467 | CG8234-RA | 1..366 | 17..382 | 1130 | 92.3 | Plus |
| CG8234-PB | 1302 | CG8234-RB | 1..201 | 182..382 | 605 | 92 | Plus |
| CG8234-PA | 1467 | CG8234-RA | 526..599 | 542..615 | 370 | 100 | Plus |
| CG8234-PB | 1302 | CG8234-RB | 361..434 | 542..615 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-1-RB | 1980 | CG30035-RB | 160..771 | 17..628 | 3060 | 100 | Plus |
| Tret1-1-RA | 3132 | CG30035-RA | 1393..1923 | 98..628 | 2655 | 100 | Plus |
| Tret1-2-RA | 1695 | CG8234-RA | 113..723 | 17..627 | 2320 | 92 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11673045..11673446 | 227..628 | 2010 | 100 | Plus |
| 2R | 25286936 | 2R | 11676526..11676926 | 227..627 | 1525 | 92 | Plus |
| 2R | 25286936 | 2R | 11672713..11672843 | 97..227 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 11676208..11676338 | 97..227 | 505 | 92.4 | Plus |
| 2R | 25286936 | 2R | 11672215..11672300 | 17..102 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 11676047..11676132 | 17..102 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:11:25 has no hits.
BO17137.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:11 Download gff for
BO17137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30035-PB | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:51:54 Download gff for
BO17137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RB | 156..771 | 13..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:41:08 Download gff for
BO17137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RB | 156..771 | 13..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:41:08 Download gff for
BO17137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11672211..11672298 | 13..100 | 97 | -> | Plus |
| 2R | 11672717..11672842 | 101..226 | 100 | -> | Plus |
| 2R | 11673045..11673446 | 227..628 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:51:54 Download gff for
BO17137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7559716..7559803 | 13..100 | 97 | -> | Plus |
| arm_2R | 7560222..7560347 | 101..226 | 100 | -> | Plus |
| arm_2R | 7560550..7560951 | 227..628 | 100 | | Plus |
BO17137.complete Sequence
1501 bp assembled on 2007-03-23
GenBank Submission: FJ634040
> BO17137.complete
GAAGTTATCAGTCGACATGAAGATCCTGATGCGAGCGGACACCCATGTGT
CCTTCTCCGTGCCCGTCGAGGAGCCCAAGGCCATTTGTACCTTCTCCCAG
GTCTTGGCTGCTCTGAGTGTCTCGCTGGGCTCCCTAGTGGTCGGATTTGT
CAGCGCTTACACGTCGCCTGCTCTTGTGTCGATGACCGATCGGAATATCA
CCTCGTTTGAGGTCACCCAAGATGCTGGTTCTTGGGTTGGTGGCATCATG
CCGCTGGCTGGATTGGCAGGTGGCATAGCCGGAGGACCCTTGATCGAATA
TCTGGGCAGGCGCAACACCATCCTGGCCACTGCGGTGCCCTTCATTGTCT
CATCACTACTGATTGCCTGTGCTGTGAATGTGGCTATGGTTCTGTGCGGA
CGATTCCTGGCTGGATTCTGCGTTGGCATTGCCTCTTTATCCCTGCCCGT
CTACCTGGGTGAAACTGTGCAGCCTGAGGTGCGAGGCACTTTGGGTTTGC
TGCCCACGGCCTTTGGTAACATAGGCATCCTGCTCTGCTTCGTGGCGGGA
TCCTTTATGAATTGGTCGATGCTGGCCTTCTTGGGAGCTGCTCTGCCCGT
TCCCTTCCTGATTTTAATGTTCCTTATTCCGGAAACTCCGCGCTGGTTTG
TGGGCCGTGGTCTGGAGGAGCGCGCCAGGAAGGCTTTGAAATGGCTGCGT
GGCAAGGAGGCTGATGTGGAGCCCGAACTGAAGGGTTTGATGCGATCCCA
GGCCGATGCCGATCGTCAGGCATCGCGAAACACCATGTTGGAGCTGCTTA
AGCTCAACAATCTGAAGCCACTATCAATTTCCTTGGGTCTGATGTTCTTC
CAACAGTTCAGCGGTATCAACGCGGTTATCTTCTACACGGTCCAGATCTT
CAAGGATGCGGGATCCACCATTGATGGCAATCTCTGCACGATCATTGTGG
GAATTGTTAACTTTTTGGCTACGTTTATAGGCATCGTTCTGATTGATCGG
GCGGGCAGAAAGATTCTTCTATATGTCTCCGACATCGCCATGGTTCTGAC
CCTGTTCGTTCTGGGCGGCTTCTTCTACTGCAAGACGTACGGTCCGGATG
TGTCCCATTTGGGTTGGTTGCCACTCACTTGCTTCGTCATCTACATTCTG
GGATTCTCCCTGGGCTTCGGACCCATTCCCTGGCTGATGATGGGTGAGAT
TCTGCCGGCCAAAATTCGCGGATCGGCTGCCTCGGTGGCCACGGCTTTCA
ACTGGTTCTGCACGTTTGTGGTGACCAAGACCTTCCAGGACCTCACGGTT
GCTATGGGCGCGCATGGAGCGTTCTGGCTATTCGGCGCCATCTGCTTCGT
GGGTCTGTTCTTTGTGATAATCTACGTGCCCGAAACGCAGGGCAAGACGC
TGGAGGACATCGAGCGGAAGATGATGGGCCGTGTGCGCCGCATGTCCTCG
GTGGCCAATATCAAGCCATTGTCCTTCAACATGGCAAGCTTTCTAGACCA
T
BO17137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-1-RB | 1470 | CG30035-PB | 1..1467 | 17..1483 | 7335 | 100 | Plus |
| Tret1-1-RA | 2574 | CG30035-PA | 1186..2571 | 98..1483 | 6930 | 100 | Plus |
| Tret1-2-RA | 1467 | CG8234-PA | 1..1464 | 17..1483 | 5380 | 91.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-1-RB | 1980 | CG30035-RB | 160..1626 | 17..1483 | 7335 | 100 | Plus |
| Tret1-1-RA | 3132 | CG30035-RA | 1393..2778 | 98..1483 | 6930 | 100 | Plus |
| Tret1-2-RA | 1695 | CG8234-RA | 113..1576 | 17..1483 | 5380 | 91.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11673045..11673830 | 227..1012 | 3930 | 100 | Plus |
| 2R | 25286936 | 2R | 11676526..11677311 | 227..1012 | 2850 | 90.8 | Plus |
| 2R | 25286936 | 2R | 11673888..11674179 | 1011..1302 | 1445 | 99.7 | Plus |
| 2R | 25286936 | 2R | 11677366..11677657 | 1011..1302 | 1175 | 93.5 | Plus |
| 2R | 25286936 | 2R | 11674243..11674428 | 1298..1483 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 11672713..11672843 | 97..227 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 11677713..11677895 | 1298..1483 | 580 | 88.7 | Plus |
| 2R | 25286936 | 2R | 11676208..11676338 | 97..227 | 505 | 92.4 | Plus |
| 2R | 25286936 | 2R | 11672215..11672300 | 17..102 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 11676047..11676132 | 17..102 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:26:06 has no hits.
BO17137.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:47 Download gff for
BO17137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30035-RB | 1..1470 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:40 Download gff for
BO17137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30035-RB | 251..1724 | 13..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:04 Download gff for
BO17137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RB | 160..1626 | 17..1485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:47 Download gff for
BO17137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30035-RB | 251..1724 | 13..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:23 Download gff for
BO17137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RB | 160..1626 | 17..1485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:23 Download gff for
BO17137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11672215..11672298 | 17..100 | 100 | -> | Plus |
| 2R | 11672717..11672842 | 101..226 | 100 | -> | Plus |
| 2R | 11673045..11673830 | 227..1012 | 100 | -> | Plus |
| 2R | 11673890..11674175 | 1013..1298 | 100 | -> | Plus |
| 2R | 11674244..11674428 | 1299..1485 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:04 Download gff for
BO17137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7559720..7559803 | 17..100 | 100 | -> | Plus |
| arm_2R | 7560222..7560347 | 101..226 | 100 | -> | Plus |
| arm_2R | 7560550..7561335 | 227..1012 | 100 | -> | Plus |
| arm_2R | 7561395..7561680 | 1013..1298 | 100 | -> | Plus |
| arm_2R | 7561749..7561933 | 1299..1485 | 98 | | Plus |
BO17137.pep Sequence
Translation from 16 to 1501
> BO17137.pep
MKILMRADTHVSFSVPVEEPKAICTFSQVLAALSVSLGSLVVGFVSAYTS
PALVSMTDRNITSFEVTQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGRRN
TILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGET
VQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLIL
MFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADADR
QASRNTMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGS
TIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLG
GFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKI
RGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFV
IIYVPETQGKTLEDIERKMMGRVRRMSSVANIKPLSFNMASFLDH
BO17137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-1-PB | 489 | CG30035-PB | 1..489 | 1..489 | 2499 | 100 | Plus |
| Tret1-1-PA | 857 | CG30035-PA | 391..857 | 23..489 | 2364 | 99.1 | Plus |
| Tret1-2-PA | 488 | CG8234-PA | 1..488 | 1..489 | 2222 | 88.8 | Plus |
| CG10960-PA | 471 | CG10960-PA | 15..459 | 28..471 | 849 | 40.5 | Plus |
| CG10960-PC | 471 | CG10960-PC | 15..459 | 28..471 | 849 | 40.5 | Plus |
