Clone BO17138 Report

Search the DGRC for BO17138

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG7888-RA
Protein status:BO17138.pep: validated full length
Sequenced Size:1420

Clone Sequence Records

BO17138.3prime Sequence

653 bp (584 high quality bases) assembled on 2006-10-13

> BO17138.3prime
ATGGTCTAGAAAGCTTGCCTCCGAAAAGGTTAGTACGATCTCCTTGAGTG
AGGTATACGTGCCGATTACCAAGCCCAGGATGCCCACAATGATCAGCACA
AAGTTGCTTAACACCAGCCAGACTTTTGCGAAACCCTTCGTATTGTACCA
ATGTGTGCAGATCTGGATGAGTGCCGGGAATGCCAAACCCAAAGCGGAAA
GGCATAGTGCTCCAAACAGGGAGATGAACAGCTCCAGGTTGGGAATGGCC
ACTGCCAGGAGGAAGGTGATCAGAACAAGACCAGTTCGCACTGCGTACTC
CCAAAACAGGGCATTCCGTTGGGCGCCCAGGCGCTTGGCCACATAGTCAT
TCCAGGTGATATCAATGGCCACATAGCAGGCCAATCCATGGGTGATATAA
ATGGCAAAGGCCAGCATGCCTTTGACGCACATGGAAAGCACTTCGTGCTC
CGGCATGTTTAGTGTGATGGAACCAAGCACCGCAGATCCATAGTTAAGAT
AACCAAAGAGACCCATGCCCACGTAGAGGAACACAATGAGCACCATGGAT
ACGTTGAGCACACCACAGCTGCCGCCGAACTTCTGCGGTGTCTTCATCTC
GTTTTCCAGGGGCAGGATTACACCGATGGCTTCCAGGGCAAACAAGACAG
TGG

BO17138.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7888-PB 1398 CG7888-RB 762..1395 652..19 3170 100 Minus
CG7888-PC 1389 CG7888-RC 753..1386 652..19 3170 100 Minus
CG7888-PA 1389 CG7888-RA 753..1386 652..19 3170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7888-RA 2113 CG7888-RA 1068..1701 652..19 3170 100 Minus
CG7888-RC 2125 CG7888-RC 1080..1713 652..19 3170 100 Minus
CG7888-RB 1827 CG7888-RB 782..1415 652..19 3170 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11058428..11058641 652..439 1070 100 Minus
3L 28110227 3L 11058701..11058876 439..264 880 100 Minus
3L 28110227 3L 11058945..11059101 263..107 785 100 Minus
3L 28110227 3L 11059159..11059247 107..19 445 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:11:56 has no hits.

BO17138.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:11 Download gff for BO17138.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7888-PA 752..1389 18..653 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:51:55 Download gff for BO17138.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7888-RB 781..1421 10..653 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:41:11 Download gff for BO17138.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7888-RB 781..1421 10..653 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:41:11 Download gff for BO17138.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11058945..11059100 108..263 100 -> Minus
3L 11059159..11059253 10..107 95   Minus
3L 11058427..11058640 440..653 99 -> Minus
3L 11058701..11058876 264..439 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:51:55 Download gff for BO17138.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11051527..11051740 440..653 99 -> Minus
arm_3L 11051801..11051976 264..439 100 -> Minus
arm_3L 11052045..11052200 108..263 100 -> Minus
arm_3L 11052259..11052353 10..107 95   Minus

BO17138.5prime Sequence

662 bp (565 high quality bases) assembled on 2006-10-13

> BO17138.5prime
GAAGTTATCAGTCGACATGACCAAGAATGGACACAGCAATTCGGCTTACG
TCGCCGATCATCCGGACAAATTGGAGCTGGCGGAGAAGGGTCAGAAGAAC
AAGGCCGTAGTGGCCAAGGATCCCGACTACAATCCCTATCATCATCGCGA
TGTGGAGCATCCCACCACGAACTCGGAAACCCTGTTCCATTTGCTAAAGG
GTTCGCTGGGCACAGGAATTCTGGCCATGCCAAATGCCTTTCGCAACTCC
GGTTATATCACTGGATCCATTGGTACGATTGTCATTGGTTTCATTTGCAC
CTTCTGCATTCACCAGCTGGTCAAGGCTCAGTATGAACTGTGCCGCAGGA
AGAAGATGCCCAGCATGAATTATCCAATGGTAGCGGAAACGGCAATGGGC
GAAGGCCCCAAATGTTTCCGGGTTTTTGCTCCCTACATTGGCACAGTGGT
TAACACCTTCCTGCTAATCTATCAACTGGGCACCTGTTGCGTTTACGTGG
TCTTCGTGGCGTCCAACATTAAGGCCATTGTGGATGCAGTGGCCGATACG
AGCATCGATGTGCGACTCTGCATGATCATCATACTGCTGCCACTGATCCT
CATCAACTGGGTGCGGAATCTTAAGTATCTGGCTCCGTTCCCCCCGCTGG
GCCACGCCTTTA

BO17138.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7888-PB 1398 CG7888-RB 9..633 16..640 3125 100 Plus
CG7888-PC 1389 CG7888-RC 1..624 17..640 3120 100 Plus
CG7888-PA 1389 CG7888-RA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7888-RC 2125 CG7888-RC 323..973 12..662 3165 99.1 Plus
CG7888-RA 2113 CG7888-RA 315..961 16..662 3160 99.2 Plus
CG7888-RB 1827 CG7888-RB 29..675 16..662 3160 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11058013..11058321 354..662 1470 98.4 Plus
3L 28110227 3L 11057766..11057952 169..355 935 100 Plus
3L 28110227 3L 11057555..11057708 16..169 770 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:50:21 has no hits.

BO17138.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:12 Download gff for BO17138.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7888-PB 1..654 10..661 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:34 Download gff for BO17138.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7888-RC 321..972 9..661 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:52 Download gff for BO17138.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7888-RC 321..972 9..661 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:52 Download gff for BO17138.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11058015..11058320 356..661 98   Plus
3L 11057552..11057707 10..168 98 -> Plus
3L 11057766..11057952 169..355 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:34 Download gff for BO17138.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11050652..11050807 10..168 98 -> Plus
arm_3L 11050866..11051052 169..355 100 -> Plus
arm_3L 11051115..11051420 356..661 98   Plus

BO17138.complete Sequence

1420 bp assembled on 2007-03-23

GenBank Submission: FJ634041

> BO17138.complete
GAAGTTATCAGTCGACATGACCAAGAATGGACACAGCAATTCGGCTTACG
TCGCCGATCATCCGGACAAATTGGAGCTGGCGGAGAAGGGTCAGAAGAAC
AAGGCCGTAGTGGCCAAGGATCCCGACTACAATCCCTATCATCATCGCGA
TGTGGAGCATCCCACCACGAACTCGGAAACCCTGTTCCATTTGCTAAAGG
GTTCGCTGGGCACAGGAATTCTGGCCATGCCAAATGCCTTTCGCAACTCC
GGTTATATCACTGGATCCATTGGTACGATTGTCATTGGTTTCATTTGCAC
CTTCTGCATTCACCAGCTGGTCAAGGCTCAGTATGAACTGTGCCGCAGGA
AGAAGATGCCCAGCATGAATTATCCAATGGTAGCGGAAACGGCAATGGGC
GAAGGCCCCAAATGTTTCCGGGTTTTTGCTCCCTACATTGGCACAGTGGT
TAACACCTTCCTGCTAATCTATCAACTGGGCACCTGTTGCGTTTACGTGG
TCTTCGTGGCGTCCAACATTAAGGCCATTGTGGATGCAGTGGCCGATACG
AGCATCGATGTGCGACTCTGCATGATCATCATACTGCTGCCACTGATCCT
CATCAACTGGGTGCGGAATCTTAAGTATCTGGCTCCGTTCTCCACGCTGG
CCAACGCCATTACGATGGTATCGTTCGGCATCATCTGCTACTACATCTTC
CGCGAGCCAGTTACCACAGAGGGCAAGGATGCCTTTGGAAAACCCTCGAA
TTTCCCGCTCTTCTTTGGCACTGTCTTGTTTGCCCTGGAAGCCATCGGTG
TAATCCTGCCCCTGGAAAACGAGATGAAGACACCGCAGAAGTTCGGCGGC
AGCTGTGGTGTGCTCAACGTATCCATGGTGCTCATTGTGTTCCTCTACGT
GGGCATGGGTCTCTTTGGTTATCTTAACTATGGATCTGCGGTGCTTGGTT
CCATCACACTAAACATGCCGGAGCACGAAGTGCTTTCCATGTGCGTCAAA
GGCATGCTGGCCTTTGCCATTTATATCACCCATGGATTGGCCTGCTATGT
GGCCATTGATATCACCTGGAATGACTATGTGGCCAAGCGCCTGGGCGCCC
AACGGAATGCCCTGTTTTGGGAGTACGCAGTGCGAACTGGTCTTGTTCTG
ATCACCTTCCTCCTGGCAGTGGCCATTCCCAACCTGGAGCTGTTCATCTC
CCTGTTTGGAGCACTATGCCTTTCCGCTTTGGGTTTGGCATTCCCGGCAC
TCATCCAGATCTGCACACATTGGTACAATACGAAGGGTTTCGCAAAAGTC
TGGCTGGTGTTAAGCAACTTTGTGCTGATCATTGTGGGCATCCTGGGCTT
GGTAATCGGCACGTATACCTCACTCAAGGAGATCGTACTAACCTTTTCGG
AGGCAAGCTTTCTAGACCAT

BO17138.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7888-RB 1398 CG7888-PB 9..1395 16..1402 6935 100 Plus
CG7888-RA 1389 CG7888-PA 1..1386 17..1402 6930 100 Plus
CG7888-RC 1389 CG7888-PC 1..1386 17..1402 6930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7888-RC 2125 CG7888-RC 323..1713 12..1402 6940 99.9 Plus
CG7888-RA 2113 CG7888-RA 315..1701 16..1402 6935 100 Plus
CG7888-RB 1827 CG7888-RB 29..1415 16..1402 6935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11058013..11058641 354..982 3145 100 Plus
3L 28110227 3L 11057766..11057952 169..355 935 100 Plus
3L 28110227 3L 11058701..11058876 982..1157 880 100 Plus
3L 28110227 3L 11058945..11059101 1158..1314 785 100 Plus
3L 28110227 3L 11057555..11057708 16..169 770 100 Plus
3L 28110227 3L 11059159..11059247 1314..1402 445 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:23:33 has no hits.

BO17138.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:33 Download gff for BO17138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7888-RB 1..1398 10..1403 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:16 Download gff for BO17138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7888-RC 265..1663 9..1411 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:06 Download gff for BO17138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7888-RC 328..1713 17..1404 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:33 Download gff for BO17138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7888-RC 265..1663 9..1411 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:35 Download gff for BO17138.complete
Subject Subject Range Query Range Percent Splice Strand
CG7888-RC 328..1713 17..1404 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:35 Download gff for BO17138.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11057556..11057707 17..168 100 -> Plus
3L 11057766..11057952 169..355 100 -> Plus
3L 11058015..11058640 356..981 100 -> Plus
3L 11058701..11058876 982..1157 100 -> Plus
3L 11058945..11059100 1158..1313 100 -> Plus
3L 11059159..11059247 1314..1404 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:06 Download gff for BO17138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11052259..11052347 1314..1404 97   Plus
arm_3L 11050656..11050807 17..168 100 -> Plus
arm_3L 11050866..11051052 169..355 100 -> Plus
arm_3L 11051115..11051740 356..981 100 -> Plus
arm_3L 11051801..11051976 982..1157 100 -> Plus
arm_3L 11052045..11052200 1158..1313 100 -> Plus

BO17138.pep Sequence

Translation from 16 to 1420

> BO17138.pep
MTKNGHSNSAYVADHPDKLELAEKGQKNKAVVAKDPDYNPYHHRDVEHPT
TNSETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQ
LVKAQYELCRRKKMPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLL
IYQLGTCCVYVVFVASNIKAIVDAVADTSIDVRLCMIIILLPLILINWVR
NLKYLAPFSTLANAITMVSFGIICYYIFREPVTTEGKDAFGKPSNFPLFF
GTVLFALEAIGVILPLENEMKTPQKFGGSCGVLNVSMVLIVFLYVGMGLF
GYLNYGSAVLGSITLNMPEHEVLSMCVKGMLAFAIYITHGLACYVAIDIT
WNDYVAKRLGAQRNALFWEYAVRTGLVLITFLLAVAIPNLELFISLFGAL
CLSALGLAFPALIQICTHWYNTKGFAKVWLVLSNFVLIIVGILGLVIGTY
TSLKEIVLTFSEASFLDH

BO17138.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7888-PA 462 CG7888-PA 1..462 1..462 2405 100 Plus
CG7888-PC 462 CG7888-PC 1..462 1..462 2405 100 Plus
CG7888-PB 465 CG7888-PB 4..465 1..462 2405 100 Plus
CG1139-PA 451 CG1139-PA 8..450 12..460 989 44.1 Plus
CG43693-PF 455 CG43693-PF 20..452 27..461 917 43.6 Plus