Clone Sequence Records
BO17138.3prime Sequence
653 bp (584 high quality bases) assembled on 2006-10-13
> BO17138.3prime
ATGGTCTAGAAAGCTTGCCTCCGAAAAGGTTAGTACGATCTCCTTGAGTG
AGGTATACGTGCCGATTACCAAGCCCAGGATGCCCACAATGATCAGCACA
AAGTTGCTTAACACCAGCCAGACTTTTGCGAAACCCTTCGTATTGTACCA
ATGTGTGCAGATCTGGATGAGTGCCGGGAATGCCAAACCCAAAGCGGAAA
GGCATAGTGCTCCAAACAGGGAGATGAACAGCTCCAGGTTGGGAATGGCC
ACTGCCAGGAGGAAGGTGATCAGAACAAGACCAGTTCGCACTGCGTACTC
CCAAAACAGGGCATTCCGTTGGGCGCCCAGGCGCTTGGCCACATAGTCAT
TCCAGGTGATATCAATGGCCACATAGCAGGCCAATCCATGGGTGATATAA
ATGGCAAAGGCCAGCATGCCTTTGACGCACATGGAAAGCACTTCGTGCTC
CGGCATGTTTAGTGTGATGGAACCAAGCACCGCAGATCCATAGTTAAGAT
AACCAAAGAGACCCATGCCCACGTAGAGGAACACAATGAGCACCATGGAT
ACGTTGAGCACACCACAGCTGCCGCCGAACTTCTGCGGTGTCTTCATCTC
GTTTTCCAGGGGCAGGATTACACCGATGGCTTCCAGGGCAAACAAGACAG
TGG
BO17138.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7888-PB | 1398 | CG7888-RB | 762..1395 | 652..19 | 3170 | 100 | Minus |
CG7888-PC | 1389 | CG7888-RC | 753..1386 | 652..19 | 3170 | 100 | Minus |
CG7888-PA | 1389 | CG7888-RA | 753..1386 | 652..19 | 3170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7888-RA | 2113 | CG7888-RA | 1068..1701 | 652..19 | 3170 | 100 | Minus |
CG7888-RC | 2125 | CG7888-RC | 1080..1713 | 652..19 | 3170 | 100 | Minus |
CG7888-RB | 1827 | CG7888-RB | 782..1415 | 652..19 | 3170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11058428..11058641 | 652..439 | 1070 | 100 | Minus |
3L | 28110227 | 3L | 11058701..11058876 | 439..264 | 880 | 100 | Minus |
3L | 28110227 | 3L | 11058945..11059101 | 263..107 | 785 | 100 | Minus |
3L | 28110227 | 3L | 11059159..11059247 | 107..19 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:11:56 has no hits.
BO17138.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:11 Download gff for
BO17138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-PA | 752..1389 | 18..653 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:51:55 Download gff for
BO17138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-RB | 781..1421 | 10..653 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:41:11 Download gff for
BO17138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-RB | 781..1421 | 10..653 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:41:11 Download gff for
BO17138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11058945..11059100 | 108..263 | 100 | -> | Minus |
3L | 11059159..11059253 | 10..107 | 95 | | Minus |
3L | 11058427..11058640 | 440..653 | 99 | -> | Minus |
3L | 11058701..11058876 | 264..439 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:51:55 Download gff for
BO17138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11051527..11051740 | 440..653 | 99 | -> | Minus |
arm_3L | 11051801..11051976 | 264..439 | 100 | -> | Minus |
arm_3L | 11052045..11052200 | 108..263 | 100 | -> | Minus |
arm_3L | 11052259..11052353 | 10..107 | 95 | | Minus |
BO17138.5prime Sequence
662 bp (565 high quality bases) assembled on 2006-10-13
> BO17138.5prime
GAAGTTATCAGTCGACATGACCAAGAATGGACACAGCAATTCGGCTTACG
TCGCCGATCATCCGGACAAATTGGAGCTGGCGGAGAAGGGTCAGAAGAAC
AAGGCCGTAGTGGCCAAGGATCCCGACTACAATCCCTATCATCATCGCGA
TGTGGAGCATCCCACCACGAACTCGGAAACCCTGTTCCATTTGCTAAAGG
GTTCGCTGGGCACAGGAATTCTGGCCATGCCAAATGCCTTTCGCAACTCC
GGTTATATCACTGGATCCATTGGTACGATTGTCATTGGTTTCATTTGCAC
CTTCTGCATTCACCAGCTGGTCAAGGCTCAGTATGAACTGTGCCGCAGGA
AGAAGATGCCCAGCATGAATTATCCAATGGTAGCGGAAACGGCAATGGGC
GAAGGCCCCAAATGTTTCCGGGTTTTTGCTCCCTACATTGGCACAGTGGT
TAACACCTTCCTGCTAATCTATCAACTGGGCACCTGTTGCGTTTACGTGG
TCTTCGTGGCGTCCAACATTAAGGCCATTGTGGATGCAGTGGCCGATACG
AGCATCGATGTGCGACTCTGCATGATCATCATACTGCTGCCACTGATCCT
CATCAACTGGGTGCGGAATCTTAAGTATCTGGCTCCGTTCCCCCCGCTGG
GCCACGCCTTTA
BO17138.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7888-PB | 1398 | CG7888-RB | 9..633 | 16..640 | 3125 | 100 | Plus |
CG7888-PC | 1389 | CG7888-RC | 1..624 | 17..640 | 3120 | 100 | Plus |
CG7888-PA | 1389 | CG7888-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7888-RC | 2125 | CG7888-RC | 323..973 | 12..662 | 3165 | 99.1 | Plus |
CG7888-RA | 2113 | CG7888-RA | 315..961 | 16..662 | 3160 | 99.2 | Plus |
CG7888-RB | 1827 | CG7888-RB | 29..675 | 16..662 | 3160 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11058013..11058321 | 354..662 | 1470 | 98.4 | Plus |
3L | 28110227 | 3L | 11057766..11057952 | 169..355 | 935 | 100 | Plus |
3L | 28110227 | 3L | 11057555..11057708 | 16..169 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:50:21 has no hits.
BO17138.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:12 Download gff for
BO17138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-PB | 1..654 | 10..661 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:34 Download gff for
BO17138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-RC | 321..972 | 9..661 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:52 Download gff for
BO17138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-RC | 321..972 | 9..661 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:52 Download gff for
BO17138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11058015..11058320 | 356..661 | 98 | | Plus |
3L | 11057552..11057707 | 10..168 | 98 | -> | Plus |
3L | 11057766..11057952 | 169..355 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:34 Download gff for
BO17138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11050652..11050807 | 10..168 | 98 | -> | Plus |
arm_3L | 11050866..11051052 | 169..355 | 100 | -> | Plus |
arm_3L | 11051115..11051420 | 356..661 | 98 | | Plus |
BO17138.complete Sequence
1420 bp assembled on 2007-03-23
GenBank Submission: FJ634041
> BO17138.complete
GAAGTTATCAGTCGACATGACCAAGAATGGACACAGCAATTCGGCTTACG
TCGCCGATCATCCGGACAAATTGGAGCTGGCGGAGAAGGGTCAGAAGAAC
AAGGCCGTAGTGGCCAAGGATCCCGACTACAATCCCTATCATCATCGCGA
TGTGGAGCATCCCACCACGAACTCGGAAACCCTGTTCCATTTGCTAAAGG
GTTCGCTGGGCACAGGAATTCTGGCCATGCCAAATGCCTTTCGCAACTCC
GGTTATATCACTGGATCCATTGGTACGATTGTCATTGGTTTCATTTGCAC
CTTCTGCATTCACCAGCTGGTCAAGGCTCAGTATGAACTGTGCCGCAGGA
AGAAGATGCCCAGCATGAATTATCCAATGGTAGCGGAAACGGCAATGGGC
GAAGGCCCCAAATGTTTCCGGGTTTTTGCTCCCTACATTGGCACAGTGGT
TAACACCTTCCTGCTAATCTATCAACTGGGCACCTGTTGCGTTTACGTGG
TCTTCGTGGCGTCCAACATTAAGGCCATTGTGGATGCAGTGGCCGATACG
AGCATCGATGTGCGACTCTGCATGATCATCATACTGCTGCCACTGATCCT
CATCAACTGGGTGCGGAATCTTAAGTATCTGGCTCCGTTCTCCACGCTGG
CCAACGCCATTACGATGGTATCGTTCGGCATCATCTGCTACTACATCTTC
CGCGAGCCAGTTACCACAGAGGGCAAGGATGCCTTTGGAAAACCCTCGAA
TTTCCCGCTCTTCTTTGGCACTGTCTTGTTTGCCCTGGAAGCCATCGGTG
TAATCCTGCCCCTGGAAAACGAGATGAAGACACCGCAGAAGTTCGGCGGC
AGCTGTGGTGTGCTCAACGTATCCATGGTGCTCATTGTGTTCCTCTACGT
GGGCATGGGTCTCTTTGGTTATCTTAACTATGGATCTGCGGTGCTTGGTT
CCATCACACTAAACATGCCGGAGCACGAAGTGCTTTCCATGTGCGTCAAA
GGCATGCTGGCCTTTGCCATTTATATCACCCATGGATTGGCCTGCTATGT
GGCCATTGATATCACCTGGAATGACTATGTGGCCAAGCGCCTGGGCGCCC
AACGGAATGCCCTGTTTTGGGAGTACGCAGTGCGAACTGGTCTTGTTCTG
ATCACCTTCCTCCTGGCAGTGGCCATTCCCAACCTGGAGCTGTTCATCTC
CCTGTTTGGAGCACTATGCCTTTCCGCTTTGGGTTTGGCATTCCCGGCAC
TCATCCAGATCTGCACACATTGGTACAATACGAAGGGTTTCGCAAAAGTC
TGGCTGGTGTTAAGCAACTTTGTGCTGATCATTGTGGGCATCCTGGGCTT
GGTAATCGGCACGTATACCTCACTCAAGGAGATCGTACTAACCTTTTCGG
AGGCAAGCTTTCTAGACCAT
BO17138.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7888-RB | 1398 | CG7888-PB | 9..1395 | 16..1402 | 6935 | 100 | Plus |
CG7888-RA | 1389 | CG7888-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
CG7888-RC | 1389 | CG7888-PC | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7888-RC | 2125 | CG7888-RC | 323..1713 | 12..1402 | 6940 | 99.9 | Plus |
CG7888-RA | 2113 | CG7888-RA | 315..1701 | 16..1402 | 6935 | 100 | Plus |
CG7888-RB | 1827 | CG7888-RB | 29..1415 | 16..1402 | 6935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11058013..11058641 | 354..982 | 3145 | 100 | Plus |
3L | 28110227 | 3L | 11057766..11057952 | 169..355 | 935 | 100 | Plus |
3L | 28110227 | 3L | 11058701..11058876 | 982..1157 | 880 | 100 | Plus |
3L | 28110227 | 3L | 11058945..11059101 | 1158..1314 | 785 | 100 | Plus |
3L | 28110227 | 3L | 11057555..11057708 | 16..169 | 770 | 100 | Plus |
3L | 28110227 | 3L | 11059159..11059247 | 1314..1402 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:23:33 has no hits.
BO17138.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:33 Download gff for
BO17138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-RB | 1..1398 | 10..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:16 Download gff for
BO17138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-RC | 265..1663 | 9..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:06 Download gff for
BO17138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-RC | 328..1713 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:33 Download gff for
BO17138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-RC | 265..1663 | 9..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:35 Download gff for
BO17138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7888-RC | 328..1713 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:35 Download gff for
BO17138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11057556..11057707 | 17..168 | 100 | -> | Plus |
3L | 11057766..11057952 | 169..355 | 100 | -> | Plus |
3L | 11058015..11058640 | 356..981 | 100 | -> | Plus |
3L | 11058701..11058876 | 982..1157 | 100 | -> | Plus |
3L | 11058945..11059100 | 1158..1313 | 100 | -> | Plus |
3L | 11059159..11059247 | 1314..1404 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:06 Download gff for
BO17138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11052259..11052347 | 1314..1404 | 97 | | Plus |
arm_3L | 11050656..11050807 | 17..168 | 100 | -> | Plus |
arm_3L | 11050866..11051052 | 169..355 | 100 | -> | Plus |
arm_3L | 11051115..11051740 | 356..981 | 100 | -> | Plus |
arm_3L | 11051801..11051976 | 982..1157 | 100 | -> | Plus |
arm_3L | 11052045..11052200 | 1158..1313 | 100 | -> | Plus |
BO17138.pep Sequence
Translation from 16 to 1420
> BO17138.pep
MTKNGHSNSAYVADHPDKLELAEKGQKNKAVVAKDPDYNPYHHRDVEHPT
TNSETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQ
LVKAQYELCRRKKMPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLL
IYQLGTCCVYVVFVASNIKAIVDAVADTSIDVRLCMIIILLPLILINWVR
NLKYLAPFSTLANAITMVSFGIICYYIFREPVTTEGKDAFGKPSNFPLFF
GTVLFALEAIGVILPLENEMKTPQKFGGSCGVLNVSMVLIVFLYVGMGLF
GYLNYGSAVLGSITLNMPEHEVLSMCVKGMLAFAIYITHGLACYVAIDIT
WNDYVAKRLGAQRNALFWEYAVRTGLVLITFLLAVAIPNLELFISLFGAL
CLSALGLAFPALIQICTHWYNTKGFAKVWLVLSNFVLIIVGILGLVIGTY
TSLKEIVLTFSEASFLDH
BO17138.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7888-PA | 462 | CG7888-PA | 1..462 | 1..462 | 2405 | 100 | Plus |
CG7888-PC | 462 | CG7888-PC | 1..462 | 1..462 | 2405 | 100 | Plus |
CG7888-PB | 465 | CG7888-PB | 4..465 | 1..462 | 2405 | 100 | Plus |
CG1139-PA | 451 | CG1139-PA | 8..450 | 12..460 | 989 | 44.1 | Plus |
CG43693-PF | 455 | CG43693-PF | 20..452 | 27..461 | 917 | 43.6 | Plus |