Clone Sequence Records
BO17140.3prime Sequence
263 bp (263 high quality bases) assembled on 2006-10-13
> BO17140.3prime
ATGGTCTAGAAAGCTTGCATTTATGCTGACCTCTGGAATGCCTTTTAATT
GCCCACCCAGCTGTTCGATGTTTTGGTGCTCGGTTTGCTGTTCAGGTTCT
GTCAGAGGCCACAGACATGGGAAACTGAGTGGAAACATCTCAAGGACTGT
CAATCGCAACTGGAGGGTCTTATGCAGATTTCCGTTTGACTTTGGCCTGC
CTTTTGCGCACGCAAAGCCAAGTGTTGACCTCAGTTTCGCTGCTGTCATG
TCGACTGATAACT
BO17140.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30121-PA | 234 | CG30121-RA | 1..231 | 249..19 | 1155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 15:14:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18740395..18740625 | 19..249 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:14:22 has no hits.
BO17140.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:13 Download gff for
BO17140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-PA | 1..234 | 18..249 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:56 Download gff for
BO17140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740395..18740625 | 19..249 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:56 Download gff for
BO17140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740395..18740625 | 19..249 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:06 Download gff for
BO17140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627900..14628130 | 19..249 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:06 Download gff for
BO17140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627900..14628130 | 19..249 | 100 | | Plus |
BO17140.5prime Sequence
263 bp (263 high quality bases) assembled on 2006-10-13
> BO17140.5prime
GAAGTTATCAGTCGACATGACAGCAGCGAAACTGAGGTCAACACTTGGCT
TTGCGTGCGCAAAAGGCAGGCCAAAGTCAAACGGAAATCTGCATAAGACC
CTCCAGTTGCGATTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATG
TCTGTGGCCTCTGACAGAACCTGAACAGCAAACCGAGCACCAAAACATCG
AACAGCTGGGTGGGCAATTAAAAGGCATTCCAGAGGTCAGCATAAATGCA
AGCTTTCTAGACC
BO17140.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30121-PA | 234 | CG30121-RA | 1..231 | 17..247 | 1155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 16:08:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18740395..18740625 | 247..17 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:08:14 has no hits.
BO17140.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:13 Download gff for
BO17140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-PA | 1..234 | 17..248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:34 Download gff for
BO17140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740395..18740625 | 17..247 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:34 Download gff for
BO17140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740395..18740625 | 17..247 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:01:01 Download gff for
BO17140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627900..14628130 | 17..247 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:01:01 Download gff for
BO17140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627900..14628130 | 17..247 | 100 | | Minus |
BO17140.complete Sequence
265 bp assembled on 2007-10-17
GenBank Submission: FJ634042
> BO17140.complete
GAAGTTATCAGTCGACATGACAGCAGCGAAACTGAGGTCAACACTTGGCT
TTGCGTGCGCAAAAGGCAGGCCAAAGTCAAACGGAAATCTGCATAAGACC
CTCCAGTTGCGATTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATG
TCTGTGGCCTCTGACAGAACCTGAACAGCAAACCGAGCACCAAAACATCG
AACAGCTGGGTGGGCAATTAAAAGGCATTCCAGAGGTCAGCATAAATGCA
AGCTTTCTAGACCAT
BO17140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:00:52 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:00:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18740395..18740625 | 247..17 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:51 has no hits.
BO17140.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:24 Download gff for
BO17140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 1..234 | 17..248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:03 Download gff for
BO17140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 805..1035 | 17..247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:11 Download gff for
BO17140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 805..1035 | 17..249 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:00 Download gff for
BO17140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740393..18740625 | 17..249 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:00 Download gff for
BO17140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740393..18740625 | 17..249 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:35 Download gff for
BO17140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627898..14628130 | 17..249 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:35 Download gff for
BO17140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627898..14628130 | 17..249 | 99 | | Minus |
BO17140.pep Sequence
Translation from 16 to 265
> BO17140.pep
MTAAKLRSTLGFACAKGRPKSNGNLHKTLQLRLTVLEMFPLSFPCLWPLT
EPEQQTEHQNIEQLGGQLKGIPEVSINASFLDH
Sequence BO17140.pep has no blast hits.