Clone BO17140 Report

Search the DGRC for BO17140

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG30121-RA
Protein status:BO17140.pep: validated full length
Sequenced Size:265

Clone Sequence Records

BO17140.3prime Sequence

263 bp (263 high quality bases) assembled on 2006-10-13

> BO17140.3prime
ATGGTCTAGAAAGCTTGCATTTATGCTGACCTCTGGAATGCCTTTTAATT
GCCCACCCAGCTGTTCGATGTTTTGGTGCTCGGTTTGCTGTTCAGGTTCT
GTCAGAGGCCACAGACATGGGAAACTGAGTGGAAACATCTCAAGGACTGT
CAATCGCAACTGGAGGGTCTTATGCAGATTTCCGTTTGACTTTGGCCTGC
CTTTTGCGCACGCAAAGCCAAGTGTTGACCTCAGTTTCGCTGCTGTCATG
TCGACTGATAACT

BO17140.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30121-PA 234 CG30121-RA 1..231 249..19 1155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 15:14:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18740395..18740625 19..249 1155 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:14:22 has no hits.

BO17140.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:13 Download gff for BO17140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30121-PA 1..234 18..249 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:56 Download gff for BO17140.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18740395..18740625 19..249 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:56 Download gff for BO17140.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18740395..18740625 19..249 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:06 Download gff for BO17140.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627900..14628130 19..249 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:06 Download gff for BO17140.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627900..14628130 19..249 100   Plus

BO17140.5prime Sequence

263 bp (263 high quality bases) assembled on 2006-10-13

> BO17140.5prime
GAAGTTATCAGTCGACATGACAGCAGCGAAACTGAGGTCAACACTTGGCT
TTGCGTGCGCAAAAGGCAGGCCAAAGTCAAACGGAAATCTGCATAAGACC
CTCCAGTTGCGATTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATG
TCTGTGGCCTCTGACAGAACCTGAACAGCAAACCGAGCACCAAAACATCG
AACAGCTGGGTGGGCAATTAAAAGGCATTCCAGAGGTCAGCATAAATGCA
AGCTTTCTAGACC

BO17140.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30121-PA 234 CG30121-RA 1..231 17..247 1155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 16:08:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18740395..18740625 247..17 1155 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:08:14 has no hits.

BO17140.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:13 Download gff for BO17140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30121-PA 1..234 17..248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:34 Download gff for BO17140.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18740395..18740625 17..247 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:34 Download gff for BO17140.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18740395..18740625 17..247 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:01:01 Download gff for BO17140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627900..14628130 17..247 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:01:01 Download gff for BO17140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627900..14628130 17..247 100   Minus

BO17140.complete Sequence

265 bp assembled on 2007-10-17

GenBank Submission: FJ634042

> BO17140.complete
GAAGTTATCAGTCGACATGACAGCAGCGAAACTGAGGTCAACACTTGGCT
TTGCGTGCGCAAAAGGCAGGCCAAAGTCAAACGGAAATCTGCATAAGACC
CTCCAGTTGCGATTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATG
TCTGTGGCCTCTGACAGAACCTGAACAGCAAACCGAGCACCAAAACATCG
AACAGCTGGGTGGGCAATTAAAAGGCATTCCAGAGGTCAGCATAAATGCA
AGCTTTCTAGACCAT

BO17140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:00:52 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:00:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18740395..18740625 247..17 1155 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:00:51 has no hits.

BO17140.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:24 Download gff for BO17140.complete
Subject Subject Range Query Range Percent Splice Strand
CG30121-RA 1..234 17..248 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:03 Download gff for BO17140.complete
Subject Subject Range Query Range Percent Splice Strand
CG30121-RA 805..1035 17..247 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:11 Download gff for BO17140.complete
Subject Subject Range Query Range Percent Splice Strand
CG30121-RA 805..1035 17..249 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:00 Download gff for BO17140.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18740393..18740625 17..249 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:00 Download gff for BO17140.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18740393..18740625 17..249 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:35 Download gff for BO17140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627898..14628130 17..249 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:35 Download gff for BO17140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627898..14628130 17..249 99   Minus

BO17140.pep Sequence

Translation from 16 to 265

> BO17140.pep
MTAAKLRSTLGFACAKGRPKSNGNLHKTLQLRLTVLEMFPLSFPCLWPLT
EPEQQTEHQNIEQLGGQLKGIPEVSINASFLDH
Sequence BO17140.pep has no blast hits.