Clone Sequence Records
BO17145.3prime Sequence
860 bp (777 high quality bases) assembled on 2006-10-13
> BO17145.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCCCTTGGTGGCCTTCTCGGCGGCCT
TGGTGACCTTGCCACCGGAGGCATCCTTGAAGTTGACAGCCTTAATGACA
CCGACAGCCACGGTCTGCCTCATGTCACGCACAGCGAAGCGACCCAGAGG
GGGGAACTCCTGGAAGGCCTCCACGCACAGGGGCTTAGAGGGCACCAGGT
TGACGATGGCAGCATCGCCAGACTTGATGAACTTGGGGTTCTCCTCGGTG
GTCTTGCCGGAACGACGGTCGACCTTCTCCTTGATCTCAGCGAACTTGCA
AGCAATGTGAGCGGTGTGGCAATCCAACACGGGGGTGTAGCCGTTGGCAA
TCTGACCGGGGTGGTTCAGCACGATGACCTGGGCGGTGAAGTCGGCGGCT
CCCTTGGGGGGGTTAGCCTTGGAGTCACCGGCAACGTAGCCACGACGCAG
CTCCTTCACGGACACGTTCTTGACGTTGAAGCCAACGTTGTCTCCGGGAA
CGGCCTCCTGCAGGGCCTCGTGGTGCATCTCCACGGACTTGACCTCAGTG
GTGATGTTAGCAGGGGCGAAGACCACAACGGTACCGGGCTTCAGCACACC
AGTCTCCACACGACCCACGGGTACTGTTCCAATACCGCCAATTTTGTACA
CATCCTGCAGGGGCAGACGCAGGGCCTTGTCGGTGGGACGGGCTGGGGGA
AGGATGGCATCGAGGGCATCGATCAAGGTCTTGCCGTCAGCGTTACCCTC
CTTGCGCTCCACCTTCCATCCCTTGAACCAGGGCATGTTGGTAGAGGGTT
CCAACATGTTGTCGCCGTGCCATCCCGGAATGGGCACGAAAGCAACGGCG
GCTGGGTTGT
BO17145.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8280-PA | 1392 | Ef1alpha48D-RA | 548..1389 | 860..19 | 4110 | 99.5 | Minus |
| CG8280-PB | 1392 | Ef1alpha48D-RB | 548..1389 | 860..19 | 4110 | 99.5 | Minus |
| CG1873-PA | 1389 | Ef1alpha100E-RA | 910..971 | 498..437 | 235 | 95.1 | Minus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 910..971 | 498..437 | 235 | 95.1 | Minus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 910..971 | 498..437 | 235 | 95.1 | Minus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 910..971 | 498..437 | 235 | 95.1 | Minus |
| CG1873-PA | 1389 | Ef1alpha100E-RA | 1242..1301 | 166..107 | 175 | 91.6 | Minus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 1242..1301 | 166..107 | 175 | 91.6 | Minus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 1242..1301 | 166..107 | 175 | 91.6 | Minus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 1242..1301 | 166..107 | 175 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha48D-RC | 2278 | CG8280-RC | 638..1479 | 860..19 | 4150 | 99.5 | Minus |
| Ef1alpha48D-RE | 2076 | CG8280-RE | 678..1519 | 860..19 | 4150 | 99.5 | Minus |
| Ef1alpha48D-RD | 1979 | CG8280-RD | 581..1422 | 860..19 | 4150 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11894122..11894963 | 860..19 | 4150 | 99.5 | Minus |
| 3R | 32079331 | 3R | 31741907..31742253 | 381..35 | 670 | 79.5 | Minus |
| 3R | 32079331 | 3R | 31740894..31741172 | 860..582 | 540 | 79.6 | Minus |
| 3R | 32079331 | 3R | 31741661..31741834 | 550..377 | 435 | 83.3 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:09:35 has no hits.
BO17145.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:16 Download gff for
BO17145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8280-PA | 548..1392 | 18..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:17 Download gff for
BO17145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RA | 631..1477 | 12..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:00 Download gff for
BO17145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RD | 581..1427 | 12..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:00 Download gff for
BO17145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11894122..11894968 | 12..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:17 Download gff for
BO17145.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7781627..7782473 | 12..860 | 99 | | Minus |
BO17145.5prime Sequence
833 bp (823 high quality bases) assembled on 2006-10-13
> BO17145.5prime
GAAGTTATCAGTCGACATGGGCAAGGAAAAGATTCACATTAACATTGTCG
TGATCGGACACGTCGATTCCGGTAAGTCGACCACCACCGGACACTTGATC
TACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGA
GGCCCAGGAGATGGGAAAGGGATCCTTCAAGTACGCCTGGGTTTTGGATA
AGTTGAAGGCTGAGCGCGAGCGTGGTATCACCATCGATATCGCCCTGTGG
AAGTTCGAAACTGCCAAGTACTACGTGACCATCATTGATGCCCCCGGACA
CAGGGATTTCATCAAGAACATGATCACTGGTACCTCGCAGGCCGATTGCG
CCGTGCTGATTGTCGCCGCCGGAACCGGAGAATTCGAGGCAGGTATCTCG
AAGAACGGCCAGACCCGCGAGCACGCCCTGCTCGCCTTCACCCTGGGTGT
GAAGCAGCTGATCGTTGGTGTGAACAAGATGGACTCCTCCGAGCCACCAT
ACAGCGAGGCCCGTTATGAGGAAATCAAGAAGGAAGTGTCCTCTTACATC
AAGAAGATCGGCTACAACCCAGCCGCCGTTGCCTTCGTGCCCATTTCCGG
ATGGCACGGCGACAACATGTTGGAACCCTCTACCAACATGCCCTGGTTCA
AGGGATGGAAGGTGGAGCGCAAGGAGGGTAACGCTGACGGCAAGACCCTG
ATCGATGCCCTCGATGCCATCCTTCCCCCAGCCCGTCCCACCGACAAGGC
CCTGCGTCTGCCCCTGCAGGATGTGTACAAAATTGGCGGTATTGGAACAG
TACCCGTGGGTCGTGTGGAGACTGGTGTGCTGA
BO17145.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8280-PA | 1392 | Ef1alpha48D-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG8280-PB | 1392 | Ef1alpha48D-RB | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG1873-PA | 1389 | Ef1alpha100E-RA | 52..443 | 68..459 | 835 | 88.5 | Plus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 52..443 | 68..459 | 835 | 88.5 | Plus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 52..443 | 68..459 | 835 | 88.5 | Plus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 52..443 | 68..459 | 835 | 88.5 | Plus |
| CG1873-PA | 1389 | Ef1alpha100E-RA | 457..551 | 473..567 | 250 | 90.5 | Plus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 457..551 | 473..567 | 250 | 90.5 | Plus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 457..551 | 473..567 | 250 | 90.5 | Plus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 457..551 | 473..567 | 250 | 90.5 | Plus |
| CG1873-PA | 1389 | Ef1alpha100E-RA | 565..599 | 581..615 | 150 | 97.1 | Plus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 565..599 | 581..615 | 150 | 97.1 | Plus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 565..599 | 581..615 | 150 | 97.1 | Plus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 565..599 | 581..615 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha48D-RC | 2278 | CG8280-RC | 89..907 | 15..833 | 4095 | 100 | Plus |
| Ef1alpha48D-RE | 2076 | CG8280-RE | 129..947 | 15..833 | 4095 | 100 | Plus |
| Ef1alpha48D-RD | 1979 | CG8280-RD | 32..850 | 15..833 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11893573..11894391 | 15..833 | 4095 | 100 | Plus |
| 3R | 32079331 | 3R | 31740347..31741156 | 17..826 | 2250 | 85.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:17:20 has no hits.
BO17145.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:17 Download gff for
BO17145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8280-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:34 Download gff for
BO17145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RA | 71..899 | 4..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:23 Download gff for
BO17145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RD | 21..849 | 4..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:23 Download gff for
BO17145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11893562..11894390 | 4..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:34 Download gff for
BO17145.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7781067..7781895 | 4..832 | 99 | | Plus |
BO17145.complete Sequence
1423 bp assembled on 2006-10-11
GenBank Submission: FJ634044
> BO17145.complete
GAAGTTATCAGTCGACATGGGCAAGGAAAAGATTCACATTAACATTGTCG
TGATCGGACACGTCGATTCCGGTAAGTCGACCACCACCGGACACTTGATC
TACAAGTGCGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGA
GGCCCAGGAGATGGGAAAGGGATCCTTCAAGTACGCCTGGGTTTTGGATA
AGTTGAAGGCTGAGCGCGAGCGTGGTATCACCATCGATATCGCCCTGTGG
AAGTTCGAAACTGCCAAGTACTACGTGACCATCATTGATGCCCCCGGACA
CAGGGATTTCATCAAGAACATGATCACTGGTACCTCGCAGGCCGATTGCG
CCGTGCTGATTGTCGCCGCCGGAACCGGAGAATTCGAGGCAGGTATCTCG
AAGAACGGCCAGACCCGCGAGCACGCCCTGCTCGCCTTCACCCTGGGTGT
GAAGCAGCTGATCGTTGGTGTGAACAAGATGGACTCCTCCGAGCCACCAT
ACAGCGAGGCCCGTTATGAGGAAATCAAGAAGGAAGTGTCCTCTTACATC
AAGAAGATCGGCTACAACCCAGCCGCCGTTGCCTTCGTGCCCATTTCCGG
ATGGCACGGCGACAACATGTTGGAACCCTCTACCAACATGCCCTGGTTCA
AGGGATGGAAGGTGGAGCGCAAGGAGGGTAACGCTGACGGCAAGACCCTG
ATCGATGCCCTCGATGCCATCCTTCCCCCAGCCCGTCCCACCGACAAGGC
CCTGCGTCTGCCCCTGCAGGATGTGTACAAAATTGGCGGTATTGGAACAG
TACCCGTGGGTCGTGTGGAGACTGGTGTGCTGAAGCCCGGTACCGTTGTG
GTCTTCGCCCCTGCTAACATCACCACTGAGGTCAAGTCCGTGGAGATGCA
CCACGAGGCCCTGCAGGAGGCCGTTCCCGGAGACAACGTTGGCTTCAACG
TCAAGAACGTGTCCGTGAAGGAGCTGCGTCGTGGCTACGTTGCCGGTGAC
TCCAAGGCTAACCCCCCCAAGGGAGCCGCCGACTTCACCGCCCAGGTCAT
CGTGCTGAACCACCCCGGTCAGATTGCCAACGGCTACACCCCCGTGTTGG
ATTGCCACACCGCTCACATTGCTTGCAAGTTCGCTGAGATCAAGGAGAAG
GTCGACCGTCGTTCCGGCAAGACCACCGAGGAGAACCCCAAGTTCATCAA
GTCTGGCGATGCTGCCATCGTCAACCTGGTGCCCTCTAAGCCCCTGTGCG
TGGAGGCCTTCCAGGAGTTCCCCCCTCTGGGTCGCTTCGCTGTGCGTGAC
ATGAGGCAGACCGTGGCTGTCGGTGTCATTAAGGCTGTCAACTTCAAGGA
TGCCTCCGGTGGCAAGGTCACCAAGGCCGCCGAGAAGGCCACCAAGGGCA
AGAAGGCAAGCTTTCTAGACCAT
BO17145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha48D-RC | 1392 | CG8280-PC | 1..1389 | 17..1405 | 6945 | 100 | Plus |
| Ef1alpha48D-RE | 1392 | CG8280-PE | 1..1389 | 17..1405 | 6945 | 100 | Plus |
| Ef1alpha48D-RD | 1392 | CG8280-PD | 1..1389 | 17..1405 | 6945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha48D-RC | 2278 | CG8280-RC | 89..1479 | 15..1405 | 6955 | 100 | Plus |
| Ef1alpha48D-RE | 2076 | CG8280-RE | 129..1519 | 15..1405 | 6955 | 100 | Plus |
| Ef1alpha48D-RD | 1979 | CG8280-RD | 32..1422 | 15..1405 | 6955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11893573..11894963 | 15..1405 | 6955 | 100 | Plus |
| 3R | 32079331 | 3R | 31740347..31741172 | 17..842 | 2270 | 85 | Plus |
| 3R | 32079331 | 3R | 31741907..31742253 | 1043..1389 | 670 | 79.5 | Plus |
| 3R | 32079331 | 3R | 31741661..31741834 | 874..1047 | 435 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:21:23 has no hits.
BO17145.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:59 Download gff for
BO17145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RB | 1..1392 | 17..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:21 Download gff for
BO17145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RB | 94..1500 | 4..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:50 Download gff for
BO17145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RA | 84..1472 | 17..1407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:59 Download gff for
BO17145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RB | 94..1500 | 4..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:47 Download gff for
BO17145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RD | 34..1422 | 17..1407 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:47 Download gff for
BO17145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11893575..11894963 | 17..1407 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:50 Download gff for
BO17145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7781080..7782468 | 17..1407 | 99 | | Plus |
BO17145.pep Sequence
Translation from 16 to 1423
> BO17145.pep
MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG
KGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIK
NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV
GVNKMDSSEPPYSEARYEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDN
MLEPSTNMPWFKGWKVERKEGNADGKTLIDALDAILPPARPTDKALRLPL
QDVYKIGGIGTVPVGRVETGVLKPGTVVVFAPANITTEVKSVEMHHEALQ
EAVPGDNVGFNVKNVSVKELRRGYVAGDSKANPPKGAADFTAQVIVLNHP
GQIANGYTPVLDCHTAHIACKFAEIKEKVDRRSGKTTEENPKFIKSGDAA
IVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKDASGGK
VTKAAEKATKGKKASFLDH
BO17145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha48D-PC | 463 | CG8280-PC | 1..463 | 1..463 | 2404 | 100 | Plus |
| Ef1alpha48D-PE | 463 | CG8280-PE | 1..463 | 1..463 | 2404 | 100 | Plus |
| Ef1alpha48D-PD | 463 | CG8280-PD | 1..463 | 1..463 | 2404 | 100 | Plus |
| Ef1alpha48D-PA | 463 | CG8280-PA | 1..463 | 1..463 | 2404 | 100 | Plus |
| Ef1alpha100E-PD | 462 | CG1873-PD | 1..462 | 1..462 | 2224 | 92 | Plus |
