Clone Sequence Records
BO17148.3prime Sequence
708 bp (666 high quality bases) assembled on 2006-10-13
> BO17148.3prime
ATGGTCTAGAAAGCTTGCAGCAGTGTGCGTCGTCGGCGGCAAAATCAGCA
GCATTGTCGGCAGAGCAGTGAAAATTACAAGCAGTTGGGCCAGGGGTGCA
GCGCCACTCGTCGAGGGATGGGGATTATCTCGTGTCGTCTTCATGATAAT
GGAAGCAGGCGATGAATAGCCGATGGCGTTGTGCGCCTTCAGTTCAATGC
GATAGTATGTGTTGCCCACCAGCTGGGTCATCTCGAAGGATGTGGTCTCC
ATCACCTCAACGGTGTTGCAGGAGTTCTCCAGTTCCGTCCAGGTGCCGCT
GATCTTAACGCCCGGACAGTATTTGATCTGGTACCTATCAATAGGCTCTC
CGTTGTCGGCGGGCACGCCCCAGCGCAGCTCGAAATGATCGGAATAGGGC
GACACGACCACCGGTTCCTCTTTGTCGTGCTGGACGGGATTATGCAATGG
CTTGGGCTCCTCGGGAGCCGATCGTCGTGGTGTCGACTGTTGCTGATTGA
CGCCCCAATTTCCTAATCCCACCTGGTTGCGGGCGGCAAATCGGAAGCTG
TACTCCGTCTGTGGTCGCAGTCCCTCCACAATGTACGGCGAATCTGGTGA
CCAACTGCGGTTATAGGCCGTCGACCAGTCCGGATTTAGGGCCTCCTTAT
ACTGCACACTGTACGCCAGAATGGGCAGGCCTAGTTCGGTTGATGGGCCG
CGAATGTC
BO17148.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3665-PB | 2322 | Fas2-RB | 1630..2319 | 708..19 | 3450 | 100 | Minus |
| CG3665-PA | 2622 | Fas2-RA | 1630..2209 | 708..129 | 2900 | 100 | Minus |
| CG3665-PC | 2436 | Fas2-RC | 1630..2209 | 708..129 | 2900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas2-RB | 2894 | CG3665-RB | 2050..2739 | 708..19 | 3450 | 100 | Minus |
| Fas2-RH | 3260 | CG3665-RH | 2050..2629 | 708..129 | 2900 | 100 | Minus |
| Fas2-RG | 3475 | CG3665-RG | 2050..2629 | 708..129 | 2900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4142049..4142445 | 312..708 | 1985 | 100 | Plus |
| X | 23542271 | X | 4141771..4141955 | 129..313 | 925 | 100 | Plus |
| X | 23542271 | X | 4139208..4139319 | 19..130 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:26:03 has no hits.
BO17148.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:19 Download gff for
BO17148.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3665-PB | 1630..2322 | 15..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:39:45 Download gff for
BO17148.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RB | 2050..2742 | 15..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:43 Download gff for
BO17148.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RB | 2050..2742 | 15..708 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:43 Download gff for
BO17148.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4139204..4139317 | 15..128 | 98 | <- | Plus |
| X | 4141771..4141954 | 129..312 | 100 | <- | Plus |
| X | 4142050..4142445 | 313..708 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:39:45 Download gff for
BO17148.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4033237..4033350 | 15..128 | 98 | <- | Plus |
| arm_X | 4035804..4035987 | 129..312 | 100 | <- | Plus |
| arm_X | 4036083..4036478 | 313..708 | 100 | | Plus |
BO17148.5prime Sequence
702 bp (563 high quality bases) assembled on 2006-10-13
> BO17148.5prime
GAAGTTATCAGTCGACATGGGTGAATTGCCGCCAAATTCAGTCGGCGTCT
TTTTGGCGCTGCTCCTCTGCAGCTGCTCTTTAATAGAACTGACCCGTGCG
CAGTCCCCCATCCTGGAGATTTATCCCAAACAAGAAGTCCAGCGCAAGCC
AGTGGGCAAGCCCCTGATCCTCACCTGCCGGCCCACAGTTCCCGAGCCGT
CCCTGGTCGCCGATCTGCAATGGAAGGACAATCGGAACAACACCATTCTG
CCCAAGCCGAATGGACGCAACCAGCCGCCGATGTACACGGAAACGCTGCC
CGGCGAAAGTTTGGCCCTGATGATTACCTCGCTGTCGGTGGAAATGGGCG
GCAAGTACTACTGCACCGCCTCCTATGCAAATACGGAGATCCTCGAGAAG
GGCGTCACAATTAAAACTTACGTGGCCATCACCTGGACAAATGCCCCTGA
GAATCAGTACCCCACTCTTGGCCAAGACTATGTGGTAATGTGCGAGGTAA
AGGCCGATCCCAATCCAACAATCGACTGGCTGCGCAACGGAGATCCGATC
CGCACGACCAACGACAAGTATGTGGTGCAAACCAATGGCCTGCTAATCCG
AAATGTCCAGGAGAGCGATGAAGGCATCTACACTTGCCGTGCAGCCGTTA
TCGAAACTGGTGAGCTATTGGAACGCACCATTCGCGTGGAGGTCTTCATT
CA
BO17148.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3665-PA | 2622 | Fas2-RA | 1..686 | 17..702 | 3430 | 100 | Plus |
| CG3665-PB | 2322 | Fas2-RB | 1..686 | 17..702 | 3430 | 100 | Plus |
| CG3665-PC | 2436 | Fas2-RC | 1..686 | 17..702 | 3430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas2-RH | 3260 | CG3665-RH | 421..1106 | 17..702 | 3430 | 100 | Plus |
| Fas2-RG | 3475 | CG3665-RG | 421..1106 | 17..702 | 3430 | 100 | Plus |
| Fas2-RD | 3352 | CG3665-RD | 421..1106 | 17..702 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4154584..4154758 | 259..85 | 875 | 100 | Minus |
| X | 23542271 | X | 4149388..4149551 | 422..259 | 820 | 100 | Minus |
| X | 23542271 | X | 4143389..4143544 | 702..547 | 780 | 100 | Minus |
| X | 23542271 | X | 4143627..4143752 | 547..422 | 630 | 100 | Minus |
| X | 23542271 | X | 4203191..4203260 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:47:19 has no hits.
BO17148.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:20 Download gff for
BO17148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3665-PC | 1..685 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:32:42 Download gff for
BO17148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RE | 421..1105 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:40 Download gff for
BO17148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RD | 421..1105 | 17..701 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:40 Download gff for
BO17148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4143390..4143543 | 548..701 | 100 | <- | Minus |
| X | 4143627..4143751 | 423..547 | 100 | <- | Minus |
| X | 4149388..4149551 | 259..422 | 100 | <- | Minus |
| X | 4154585..4154756 | 87..258 | 100 | <- | Minus |
| X | 4203191..4203260 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:32:42 Download gff for
BO17148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4037423..4037576 | 548..701 | 100 | <- | Minus |
| arm_X | 4037660..4037784 | 423..547 | 100 | <- | Minus |
| arm_X | 4043421..4043584 | 259..422 | 100 | <- | Minus |
| arm_X | 4048618..4048789 | 87..258 | 100 | <- | Minus |
| arm_X | 4097224..4097293 | 17..86 | 100 | | Minus |
BO17148.complete Sequence
2353 bp assembled on 2007-03-23
GenBank Submission: FJ634045
> BO17148.complete
GAAGTTATCAGTCGACATGGGTGAATTGCCGCCAAATTCAGTCGGCGTCT
TTTTGGCGCTGCTCCTCTGCAGCTGCTCTTTAATAGAACTGACCCGTGCG
CAGTCCCCCATCCTGGAGATTTATCCCAAACAAGAAGTCCAGCGCAAGCC
AGTGGGCAAGCCCCTGATCCTCACCTGCCGGCCCACAGTTCCCGAGCCGT
CCCTGGTCGCCGATCTGCAATGGAAGGACAATCGGAACAACACCATTCTG
CCCAAGCCGAATGGACGCAACCAGCCGCCGATGTACACGGAAACGCTGCC
CGGCGAAAGTTTGGCCCTGATGATTACCTCGCTGTCGGTGGAAATGGGCG
GCAAGTACTACTGCACCGCCTCCTATGCAAATACGGAGATCCTCGAGAAG
GGCGTCACAATTAAAACTTACGTGGCCATCACCTGGACAAATGCCCCTGA
GAATCAGTACCCCACTCTTGGCCAAGACTATGTGGTAATGTGCGAGGTAA
AGGCCGATCCCAATCCAACAATCGACTGGCTGCGCAACGGAGATCCGATC
CGCACGACCAACGACAAGTATGTGGTGCAAACCAATGGCCTGCTAATCCG
AAATGTCCAGGAGAGCGATGAAGGCATCTACACTTGCCGTGCAGCCGTTA
TCGAAACTGGTGAGCTATTGGAACGCACCATTCGCGTGGAGGTCTTCATT
CAGCCGGAGATCATATCGCTACCCACCAATCTGGAGGCCGTCGAGGGCAA
GCCGTTTGCAGCCAACTGCACAGCAAGAGGCAAACCAGTACCGGAGATTA
GTTGGATTCGAGATGCCACACAACTGAACGTGGCGACCGCCGATCGCTTC
CAAGTGAATCCCCAAACTGGCCTGGTTACCATCAGCTCCGTTAGCCAGGA
TGATTATGGCACATACACATGCTTGGCCAAGAATAGGGCCGGTGTAGTGG
ATCAGAAGACCAAGCTGAATGTTTTGGTGCGTCCGCAGATCTATGAGTTG
TACAATGTGACCGGGGCCAGGACCAAGGAGATTGCCATAACCTGCCGTGC
CAAAGGACGTCCGGCACCAGCGATTACCTTCCGTCGTTGGGGAACACAGG
AGGAGTACACGAACGGGCAGCAGGATGACGATCCCCGCATCATTTTGGAG
CCGAATTTCGATGAGGAGCGCGGCGAGAGCACCGGCACCCTTCGCATCTC
CAATGCCGAGCGTTCCGACGATGGACTTTACCAGTGTATTGCCCGGAACA
AGGGAGCCGATGCCTACAAGACTGGACACATTACCGTTGAATTTGCTCCG
GACTTTAGCCACATGAAGGAGCTGCCTCCGGTTTTCTCATGGGAGCAGCG
CAAGGCGAATCTCAGCTGCCTGGCCATGGGTATTCCGAATGCCACAATCG
AATGGCACTGGAATGGTCGTAAGATCAAGGATCTGTACGATACCAATCTA
AAGATTGTCGGCACTGGACCCCGCAGCGATTTGATTGTGCATCCCGTAAC
GAGGCAGTATTACTCTGGATACAAGTGCATTGCGACCAACATCCATGGAA
CCGCTGAACATGATATGCAACTGAAGGAGGCACGTGTCCCTGATTTTGTG
TCCGAAGCCAAACCCAGTCAACTGACCGCCACCACGATGACCTTCGACAT
TCGCGGCCCATCAACCGAACTAGGCCTGCCCATTCTGGCGTACAGTGTGC
AGTATAAGGAGGCCCTAAATCCGGACTGGTCGACGGCCTATAACCGCAGT
TGGTCACCAGATTCGCCGTACATTGTGGAGGGACTGCGACCACAGACGGA
GTACAGCTTCCGATTTGCCGCCCGCAACCAGGTGGGATTAGGAAATTGGG
GCGTCAATCAGCAACAGTCGACACCACGACGATCGGCTCCCGAGGAGCCC
AAGCCATTGCATAATCCCGTCCAGCACGACAAAGAGGAACCGGTGGTCGT
GTCGCCCTATTCCGATCATTTCGAGCTGCGCTGGGGCGTGCCCGCCGACA
ACGGAGAGCCTATTGATAGGTACCAGATCAAATACTGTCCGGGCGTTAAG
ATCAGCGGCACCTGGACGGAACTGGAGAACTCCTGCAACACCGTTGAGGT
GATGGAGACCACATCCTTCGAGATGACCCAGCTGGTGGGCAACACATACT
ATCGCATTGAACTGAAGGCGCACAACGCCATCGGCTATTCATCGCCTGCT
TCCATTATCATGAAGACGACACGAGATAATCCCCATCCCTCGACGAGTGG
CGCTGCACCCCTGGCCCAACTGCTTGTAATTTTCACTGCTCTGCCGACAA
TGCTGCTGATTTTGCCGCCGACGACGCACACTGCTGCAAGCTTTCTAGAC
CAT
BO17148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas2-RB | 2322 | CG3665-PB | 1..2319 | 17..2335 | 11595 | 100 | Plus |
| Fas2-RH | 2499 | CG3665-PH | 1..2209 | 17..2225 | 11045 | 100 | Plus |
| Fas2-RG | 2658 | CG3665-PG | 1..2209 | 17..2225 | 11045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas2-RB | 2894 | CG3665-RB | 421..2739 | 17..2335 | 11595 | 100 | Plus |
| Fas2-RH | 3260 | CG3665-RH | 421..2629 | 17..2225 | 11045 | 100 | Plus |
| Fas2-RG | 3475 | CG3665-RG | 421..2629 | 17..2225 | 11045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4142049..4143544 | 2042..547 | 7480 | 100 | Minus |
| X | 23542271 | X | 4141771..4141955 | 2225..2041 | 925 | 100 | Minus |
| X | 23542271 | X | 4154584..4154758 | 259..85 | 875 | 100 | Minus |
| X | 23542271 | X | 4149388..4149551 | 422..259 | 820 | 100 | Minus |
| X | 23542271 | X | 4143627..4143752 | 547..422 | 630 | 100 | Minus |
| X | 23542271 | X | 4139208..4139319 | 2335..2224 | 560 | 100 | Minus |
| X | 23542271 | X | 4203191..4203260 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:38:56 has no hits.
BO17148.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:33 Download gff for
BO17148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RB | 1..2322 | 17..2339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:18 Download gff for
BO17148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RB | 418..2736 | 17..2337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:01 Download gff for
BO17148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RB | 421..2739 | 17..2337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:33 Download gff for
BO17148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RB | 418..2739 | 17..2339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:15 Download gff for
BO17148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RB | 421..2739 | 17..2337 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:15 Download gff for
BO17148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4203191..4203260 | 17..86 | 100 | | Minus |
| X | 4139206..4139317 | 2226..2337 | 98 | <- | Minus |
| X | 4141771..4141954 | 2042..2225 | 100 | <- | Minus |
| X | 4142050..4143543 | 548..2041 | 100 | <- | Minus |
| X | 4143627..4143751 | 423..547 | 100 | <- | Minus |
| X | 4149388..4149551 | 259..422 | 100 | <- | Minus |
| X | 4154585..4154756 | 87..258 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:01 Download gff for
BO17148.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4097224..4097293 | 17..86 | 100 | | Minus |
| arm_X | 4033239..4033350 | 2226..2337 | 98 | <- | Minus |
| arm_X | 4035804..4035987 | 2042..2225 | 100 | <- | Minus |
| arm_X | 4036083..4037576 | 548..2041 | 100 | <- | Minus |
| arm_X | 4037660..4037784 | 423..547 | 100 | <- | Minus |
| arm_X | 4043421..4043584 | 259..422 | 100 | <- | Minus |
| arm_X | 4048618..4048789 | 87..258 | 100 | <- | Minus |
BO17148.pep Sequence
Translation from 16 to 2353
> BO17148.pep
MGELPPNSVGVFLALLLCSCSLIELTRAQSPILEIYPKQEVQRKPVGKPL
ILTCRPTVPEPSLVADLQWKDNRNNTILPKPNGRNQPPMYTETLPGESLA
LMITSLSVEMGGKYYCTASYANTEILEKGVTIKTYVAITWTNAPENQYPT
LGQDYVVMCEVKADPNPTIDWLRNGDPIRTTNDKYVVQTNGLLIRNVQES
DEGIYTCRAAVIETGELLERTIRVEVFIQPEIISLPTNLEAVEGKPFAAN
CTARGKPVPEISWIRDATQLNVATADRFQVNPQTGLVTISSVSQDDYGTY
TCLAKNRAGVVDQKTKLNVLVRPQIYELYNVTGARTKEIAITCRAKGRPA
PAITFRRWGTQEEYTNGQQDDDPRIILEPNFDEERGESTGTLRISNAERS
DDGLYQCIARNKGADAYKTGHITVEFAPDFSHMKELPPVFSWEQRKANLS
CLAMGIPNATIEWHWNGRKIKDLYDTNLKIVGTGPRSDLIVHPVTRQYYS
GYKCIATNIHGTAEHDMQLKEARVPDFVSEAKPSQLTATTMTFDIRGPST
ELGLPILAYSVQYKEALNPDWSTAYNRSWSPDSPYIVEGLRPQTEYSFRF
AARNQVGLGNWGVNQQQSTPRRSAPEEPKPLHNPVQHDKEEPVVVSPYSD
HFELRWGVPADNGEPIDRYQIKYCPGVKISGTWTELENSCNTVEVMETTS
FEMTQLVGNTYYRIELKAHNAIGYSSPASIIMKTTRDNPHPSTSGAAPLA
QLLVIFTALPTMLLILPPTTHTAASFLDH
BO17148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas2-PB | 773 | CG3665-PB | 1..773 | 1..773 | 4102 | 100 | Plus |
| Fas2-PH | 832 | CG3665-PH | 1..766 | 1..766 | 3914 | 96.6 | Plus |
| Fas2-PG | 885 | CG3665-PG | 1..766 | 1..766 | 3914 | 96.6 | Plus |
| Fas2-PD | 844 | CG3665-PD | 1..766 | 1..766 | 3914 | 96.6 | Plus |
| Fas2-PA | 873 | CG3665-PA | 1..766 | 1..766 | 3914 | 96.6 | Plus |
