Clone Sequence Records
BO17149.3prime Sequence
626 bp (566 high quality bases) assembled on 2006-10-13
> BO17149.3prime
ATGGTCTAGAAAGCTTGCGCCCATCGTAGCAACGGCTTCCAGTTGCGGCA
GGTACGGAGGCAGGGTGTCTAGTCCGCCGGCCACTCGATCAAAGCTGAGG
GCATGACGCGGTGAGGTCATCAGCTGACGTACTCCGAAGGCCACGTCCTC
ACAGCTGCTCCGCTCGCTCGGCTCCAGCTGCCAGCAGTTGAGCAGCAGCT
GGTAGAGATCCCCGTAGACGTAGGCTGGCTGCGCCGGACGCACTGCAGCC
CGAATGGCCTCTAGAAGCTGTTGGTTACTTGCCACTGCATTGGCATAGGG
AGTACCGCCAAGGGCACAGCATTCCCACGCCACGCAGGCCAGGGACCAGA
CATCAGAACGGGTGGAATGGTGATGCTGATGGCGCAGCACCTCCGGGGCC
AGCCACCGGTTGTGGTCTGGCTGCTGGCGAGCAATGTTCATGTAGGGCAG
CGGTCCAAAGACGCTCAGTTTTAGCTTGAAATCGCTGGTAACGAAGACGC
TGTGCGAGCAGAGCTGTCGATGCACCACCTGGCAGCTGGATAGATAATTC
ATGGCACTGGCAAGCTCGTAGATCCACTGCAGCACTAGCTGCTCAGAGAG
GGGAGTCAAGCGTGGCGACGGTGCCA
BO17149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31127-PA | 2376 | Wsck-RA | 1766..2373 | 626..19 | 3015 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-RA | 2895 | CG31127-RA | 1975..2582 | 626..19 | 3025 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24627379..24627986 | 19..626 | 3025 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-10 15:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT1 | 769 | Dbuz\BuT1 BUT1 769bp | 422..471 | 435..388 | 119 | 74 | Minus |
BO17149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:21 Download gff for
BO17149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31127-PA | 1767..2376 | 16..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:21:12 Download gff for
BO17149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 1976..2582 | 19..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:14 Download gff for
BO17149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 1976..2582 | 19..625 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:14 Download gff for
BO17149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24627379..24627985 | 19..625 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:12 Download gff for
BO17149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20453101..20453707 | 19..625 | 99 | | Plus |
BO17149.5prime Sequence
627 bp (556 high quality bases) assembled on 2006-10-13
> BO17149.5prime
GAAGTTATCAGTCGACATGGAATGCGGTTCACACAGCGGACACCGCCCAA
TTCCGATTTGGCTTTCGAGCTGCCTCGTGGCCATGTGCTTGGGCCTTCCG
CTAGGAGCAGCTGTCCCCCAGGAAGCACCTGCCTACTACTACGTTGGTTG
CTACACGGCACGAACGGATCTTCTCCATGAATCGGTGTACGCCAAGACAC
CGCAGACCTGCATCGAGATCTGCGAGCATCAGGGTCACCACTATGCCGTG
CTGGCCTCCGAGAAGTGCTTCTGTGCAAATGTCCTGGAGCCGCAGGAGCA
ACAGGATGAACAGCTCTGCAACACTCGCTGCCTGGCCAACAAAGCGCAGT
ATTGTGGCGGAGTTGGTGTGCACTCGTACTACTCCACCATACTGACCAAA
CAACCGGGTCCGCATCATCTAAGAATCTCGAACAAAACGGAGAACAGCCT
GACCCTTAGCTGGAATGCGTACGAGGCGAGGAAACTACTCCTGGCCGGCG
GCGCGGAGGCAGTGCTTCCCAACCAGCTACTGGACAACTTCCTGATCAAA
GCTCAAGTCCTGAAGACCTACTCCTCGTTGCCCGCCTTCCCGCAGCCTGA
GTTTATGGTGCAAAGCACGGAAACGCA
BO17149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31127-PA | 2376 | Wsck-RA | 1..611 | 17..627 | 3005 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-RA | 2895 | CG31127-RA | 209..820 | 16..627 | 3030 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24629256..24629867 | 627..16 | 3030 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:15:49 has no hits.
BO17149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:22 Download gff for
BO17149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31127-PA | 1..610 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:21:16 Download gff for
BO17149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 206..819 | 10..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:21 Download gff for
BO17149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 206..819 | 10..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:21 Download gff for
BO17149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24629257..24629870 | 10..626 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:16 Download gff for
BO17149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20454979..20455592 | 10..626 | 99 | | Minus |
BO17149.complete Sequence
2407 bp assembled on 2006-12-18
GenBank Submission: FJ634046
> BO17149.complete
GAAGTTATCAGTCGACATGGAATGCGGTTCACACAGCGGACACCGCCCAA
TTCCGATTTGGCTTTCGAGCTGCCTCGTGGCCATGTGCTTGGGCCTTCCG
CTAGGAGCAGCTGTCCCCCAGGAAGCACCTGCCTACTACTACGTTGGTTG
CTACACGGCACGAACGGATCTTCTCCATGAATCGGTGTACGCCAAGACAC
CGCAGACCTGCATCGAGATCTGCGAGCATCAGGGTCACCACTATGCCGTG
CTGGCCTCCGAGAAGTGCTTCTGTGCAAATGTCCTGGAGCCGCAGGAGCA
ACAGGATGAACAGCTCTGCAACACTCGCTGCCTGGCCAACAAAGCGCAGT
ATTGTGGCGGAGTTGGTGTGCACTCGTACTACTCCACCATACTGACCAAA
CAACCGGGTCCGCATCATCTAAGAATCTCGAACAAAACGGAGAACAGCCT
GACCCTTAGCTGGAATGCGTACGAGGCGAGGAAACTACTCCTGGCCGGCG
GCGCGGAGGCAGTGCTTCCCAACCAGCTACTGGACAACTTCCTGATCAAA
GCTCAGGTCCTGAAGACCTACTCCTCGTTGCCCGCCTTCCCGCAGCCTGA
GTTTATGGTGCAGAGCACGGAAACGCAGTTTGAACTCACAGACTTGCATC
CCGCCACGCTGTACAACATATCCGTGAGAGCCATGTGCAAGGATGCCCAA
GTAGGTCAATCTGAATGCGGACAGGCCTCGATAGAAGCCACCACGGAGGT
GGGCCTTCCAAGTCCCGTGCCAGCACAGCCGAAAATCCTCAGCCGGACTG
ACCGCACTGTAACCATCGAGTTGTCGCCCATTCGGAATGACAATGGACCG
CTGAGCAAACTGCTCGTCATCGTGGAATACGTGGACAACGCCCTGAGTCA
GCCATTCGATGCCCAGCTCCTGGGCAGCTGGCAGCAGGCTCAACAAGATG
GAGTGCCCTACTACATAGCCGCCGAATTGGACTACGATCGACCGGAGGAC
AATCGCACCCGGCGCTTTGTGGTCGGCGATGGCAAGCGTTACGGACGATT
TACCAATAAGCCGTTGGATCAACCAGATGCACATGTCCACATCAGTCTCG
GATTGGTGAGCACACTGGAGGGCGTTACCAAGACGATGTACAGTCGTGGA
ACTCACGACCAGCATGTGACATCCCTAGACGACTTTAGTTACGCCACCTT
TGAGAAGGGTCAATCCTCGGTGGTTGCCCTAGCTGTCACCTGTGTGATCT
TCGGCTCCTGCCTCCTGCTCAGTCTTATTGCCTACTTCTATCTGCGCTAC
AAGACCTGCCGCGGGCGACGATTGACTGGTGGCAATACGCACGAGATGAC
GCTGCAAACGCCCATAATCGAGCGGGAAAATAACGGATACCTTGTGGAGG
ACGATCCACTGCCACACTCGCCGGAAAACTTCAAGCAGCAGTTGCAACAG
TTGGTGGAAGGATACGAACGGATACCAAGGAATGCACTACGACTAAATGT
GAACGATGTGATCGGAGACGGACGCTTTGGTGAGATTATAACCGGAAAGG
TTTCCACAAACGATTTTGCCAGAGATTGCACCCTGCACGTGCTCTGTCTG
GACGATCTGAATGGTACTACACAGGCACAGTTGCTGAGAGAACTACGTCA
GTTGTCTCAATTGAAGCGCCAGGAGCATTTGCTAGATTTCTATGGAGTAT
CAGCAAGTCCCGATTGGTTCTACCTAATCTTCGAGCAGCAACGCATGAGT
CTAAAGAGAAAACTGGTGGAGAGTCGCCTGATGGCACCGTCGCCACGCTT
GACTTCCCTCTCTGAGCAGCTAGTGCTGCAGTGGATCTACGAGCTTGCCA
GTGCCATGAATTATCTATCCAGCTGCCAGGTGGTGCATCGACAGCTCTGC
TCGCACAGCGTCTTCGTTACCAGCGATTTCAAGCTAAAACTGAGCGTCTT
TGGACCGCTGCCCTACATGAACATTGCTCGCCAGCAGCCAGACCACAACC
GGTGGCTGGCCCCGGAGGTGCTGCGCCATCAGCATCACCATTCCACCCGT
TCTGATGTCTGGTCCCTGGCCTGCGTGGCGTGGGAATGCTGTGCCCTTGG
CGGTACTCCCTATGCCAATGCAGTGGCAAGTAACCAACAGCTTCTAGAGG
CCATTCGGGCTGCAGTGCGTCCGGCGCAGCCAGCCTACGTCTACGGGGAT
CTCTACCAGCTGCTGCTCAACTGCTGGCAGCTGGAGCCGAGCGAGCGGAG
CAGCTGTGAGGACGTGGCCTTCGGAGTACGTCAGCTGATGACCTCACCGC
GTCATGCCCTCAGCTTTGATCGAGTGGCCGGCGGACTAGACACCCTGCCT
CCGTACCTGCCGCAACTGGAAGCCGTTGCTACGATGGGCGCAAGCTTTCT
AGACCAT
BO17149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-RA | 2376 | CG31127-PA | 1..2373 | 17..2389 | 11865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-RA | 2895 | CG31127-RA | 209..2582 | 16..2389 | 11870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24627379..24628663 | 2389..1105 | 6425 | 100 | Minus |
| 3R | 32079331 | 3R | 24629133..24629867 | 750..16 | 3675 | 100 | Minus |
| 3R | 32079331 | 3R | 24628711..24629074 | 1110..747 | 1820 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT1 | 769 | Dbuz\BuT1 BUT1 769bp | 422..471 | 1973..2020 | 119 | 74 | Plus |
BO17149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:24 Download gff for
BO17149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 1..2376 | 17..2392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:05 Download gff for
BO17149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 219..2595 | 10..2389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:25 Download gff for
BO17149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 210..2582 | 17..2391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:24 Download gff for
BO17149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 219..2595 | 10..2389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:34 Download gff for
BO17149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 210..2582 | 17..2391 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:34 Download gff for
BO17149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24627376..24628662 | 1106..2391 | 99 | <- | Minus |
| 3R | 24628716..24629072 | 749..1105 | 100 | <- | Minus |
| 3R | 24629135..24629866 | 17..748 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:25 Download gff for
BO17149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20453098..20454384 | 1106..2391 | 99 | <- | Minus |
| arm_3R | 20454438..20454794 | 749..1105 | 100 | <- | Minus |
| arm_3R | 20454857..20455588 | 17..748 | 100 | | Minus |
BO17149.pep Sequence
Translation from 16 to 2407
> BO17149.pep
MECGSHSGHRPIPIWLSSCLVAMCLGLPLGAAVPQEAPAYYYVGCYTART
DLLHESVYAKTPQTCIEICEHQGHHYAVLASEKCFCANVLEPQEQQDEQL
CNTRCLANKAQYCGGVGVHSYYSTILTKQPGPHHLRISNKTENSLTLSWN
AYEARKLLLAGGAEAVLPNQLLDNFLIKAQVLKTYSSLPAFPQPEFMVQS
TETQFELTDLHPATLYNISVRAMCKDAQVGQSECGQASIEATTEVGLPSP
VPAQPKILSRTDRTVTIELSPIRNDNGPLSKLLVIVEYVDNALSQPFDAQ
LLGSWQQAQQDGVPYYIAAELDYDRPEDNRTRRFVVGDGKRYGRFTNKPL
DQPDAHVHISLGLVSTLEGVTKTMYSRGTHDQHVTSLDDFSYATFEKGQS
SVVALAVTCVIFGSCLLLSLIAYFYLRYKTCRGRRLTGGNTHEMTLQTPI
IERENNGYLVEDDPLPHSPENFKQQLQQLVEGYERIPRNALRLNVNDVIG
DGRFGEIITGKVSTNDFARDCTLHVLCLDDLNGTTQAQLLRELRQLSQLK
RQEHLLDFYGVSASPDWFYLIFEQQRMSLKRKLVESRLMAPSPRLTSLSE
QLVLQWIYELASAMNYLSSCQVVHRQLCSHSVFVTSDFKLKLSVFGPLPY
MNIARQQPDHNRWLAPEVLRHQHHHSTRSDVWSLACVAWECCALGGTPYA
NAVASNQQLLEAIRAAVRPAQPAYVYGDLYQLLLNCWQLEPSERSSCEDV
AFGVRQLMTSPRHALSFDRVAGGLDTLPPYLPQLEAVATMGASFLDH
BO17149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-PA | 791 | CG31127-PA | 1..791 | 1..791 | 4181 | 100 | Plus |
| htl-PC | 729 | CG7223-PC | 393..710 | 467..778 | 248 | 25.6 | Plus |
| htl-PA | 729 | CG7223-PA | 393..710 | 467..778 | 248 | 25.6 | Plus |
| htl-PB | 729 | CG7223-PB | 393..710 | 467..778 | 248 | 25.6 | Plus |
| sev-PA | 2554 | CG18085-PA | 2205..2473 | 489..746 | 208 | 27.9 | Plus |
