Clone Sequence Records
BO17150.complete Sequence
2503 bp assembled on 2008-11-10
> BO17150.complete
GAAGTTATCAGTCGACATGCGGCACACCGGAAGTAGGGCGGAAATCGATA
TGCTGGAACGCGAGACAAGCAGTCAGATCAGGAACTTGGATGTCTCGGCC
GGGGATTTGCTGAGTCGCACCCACGAGGAGCTGGTCCTTTTGCTGATTCA
GTTGAGGAGACAGAGTAGCCAGACTGCCAGGGCCATCGAGCAGTGCTGCA
GCGATATCCATGATGTGCAGAATCGCCTGCGAAGTGCCGAGGGTTTGACC
AGAGCCGAGAGTATCCAGCGTTTGGACTACTTGAAGCAGCACCTTTTGGA
CCTGGAGCGGCACTACGAGAAGAGCAAGCCGCTGGTCAATTTGGTGGACA
ACATGGTCAAGTTGGGCTCACTGTATCGCAACGATGCAAACGGCAGGGTC
CAACCAGCCACACTGGATCGCCTGGAGTTCAATCAGCGGATGCAGGAGCA
GCAAATGCTGCAAGAGGAGCAGCAGCAGTGGGAGCGTCTCAGTCCCAATC
AGGCAGAGTTGCAGGCCAAGGTGCGTGAGCTCTACCAACTGGATCAGCTG
CTGCAGGAGGAGTCGGGCACTTTGCAGAGTTTGCAGCGGGACAAGGAAGA
TCTCGAGCGAGCCTTGGGAGGATTGAGGGCTCGCATCCACGACAGCAATG
CCACGCCCATGGCCCTGGAGGCGGCCAAGAAGCAGCAGCACATCCTGGAG
CGTGAGCTGTCGCGGGTTCATCAGCTTCTGGCCGAGAACTCTAAGAAACT
GGAGCAGACAGTGGCGGGAAATGCTCGCCTGGAGCAGGAGTTACTCCTTC
TCCGTCAGAAGGTACAAGCCGTTCGAGGATCCACCACCAATGGAATGAAC
GGTGATGGCTCTCACATCAATGGTGACCAAACTGCCGCCGTTTTGGCCTC
GGAATTGGAGCGAGTGCAGTCCCTGGTGGGCGATATGCAAAGACAACGCC
ACGAACTCAGCTCCGCAGTTCGCCAGCTGACGGAGAACTCGACCAGGTTG
TACCAGGAGATTGGTAACAAGGAGATGAACGGCGGTGGCTCCACCAATGG
CAGTCTGAAGAAGCGAAGCAACTCAACTAGTTGGACGGAAACCGATTTGG
ATGCTAATATGCTGCGATGCGGATCCCGCCAGCAGTTGAATGATTCCACT
TTGAACCTATCCACTCCCCTCTATGTGGACACCAATAGTTCGACCAAACT
GAGTGACTACAATCGATACAATGGCAGTAGCGATGCCATCGAGATGAGTG
GAGTGGACAGTGATGGTTTCCTGGACAGCAATCCATTCGCGCTGGGCTTG
GAGAAGCAGGAGATTAAGACAGTGAGGATTGTCAAGCGAGAGTCTGAACG
TCGGAATCGCGATCGCAGTGAAAGGGGTCTAAGCAACTCCATTCAGAATC
TGGATCAGGTCCTGGAGGAGGAGCAATATGCCCAACAGCAGAGGGAACAG
CAGCTGTACGCTCAAAACTTGGAAGAACCGATGACCAACGGGCACCACAG
TCGATCCAAGTCATTGCCCCGAAACTACAGTGAGCCCCCGAAACAACGAC
ACAGTCGTCATCTGAATGGTGGCAAGCAGAATGGTCACCACTATAATGGT
GGCTACGATTACGATCGGAACAGCAACTACGAGCATCAGCCGCCACCACC
ACCGGCACCACAGAGCAATGGTCATCACCACAATCATCAGCAAAGGGAGC
AGCGGGAGCACCTTAATCCACTGGCCAATGCCTATTTCGCCAAGCAGCTC
CAGCAGCAGGCGAATCCCTCGAGGGACAGTGCCCGCGTGGCCTTGCGGAC
CAAGACCGATTCCCTGCAGAGCCTCAACAAAAGCCTTACGGACATCAGTC
CGGAGCCAGTGTTCCAGAGCGTTGCTGCCCGCCAGATCATCAACGAAATG
TCCGCCGGTTCGGCATCGGAGGACACCGAGAAGGTGGTGGAGAAGGTGCC
ACCGCACCACAAGCATCGCAGAGCGGTTCCAAGGGAGAAGAGGCGACACT
ACACTGCGCCAAACAATGTCAATCAGAAAGCCATGGAAAAGGTGCAGGCC
GAAAACGATATGAATCGAAATAACACCAACTGGAGAGCTCGCGATGATTT
GGATATGGAGGTGGCCCTGCGACCGCGAATGAATGCTCCTGATGTCGTTC
GTTCTGCTTTGGGACAGGGCGAAAAGATATCCGAGAACACCATAGACAAT
TTGCTGCTGGCACCGAACAAAATAGTCATACCCGAGCGTTACATACCTGA
AACAACGCCCGAGCTGTCGCCGGAGGAAAAGAAGCGTCGTCAGGAGAAGG
TCGAGTCCATCAAGAAAATGCTGGCTGAGGCGCCCATTAGCAGCAATGAA
AACGAAAGCCTGCCCCCGAGCAAAATCAACGCCGAGAAGAAGCAGCGCGA
GCACCTGCTGCAACTCAACCAAATCCTGGCCCAACAGGTGATGCAAGTCA
GCAAGATCGTGGCCGGAAATCCCACTAGTCACAACGCAAGCTTTCTAGAC
CAT
BO17150.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34383-RK | 6063 | CG34383-PK | 3592..6060 | 17..2485 | 12345 | 100 | Plus |
CG34383-RG | 6129 | CG34383-PG | 3658..6126 | 17..2485 | 12345 | 100 | Plus |
CG34383-RF | 6063 | CG34383-PF | 3592..6060 | 17..2485 | 12345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34383-RK | 9215 | CG34383-RK | 4330..6798 | 17..2485 | 12345 | 100 | Plus |
CG34383-RJ | 10048 | CG34383-RJ | 5163..7631 | 17..2485 | 12345 | 100 | Plus |
CG34383-RG | 6710 | CG34383-RG | 3931..6399 | 17..2485 | 12345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13758456..13759783 | 744..2071 | 6640 | 100 | Plus |
3R | 32079331 | 3R | 13757180..13757477 | 218..515 | 1490 | 100 | Plus |
3R | 32079331 | 3R | 13757551..13757783 | 513..745 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 13759844..13760026 | 2072..2254 | 915 | 100 | Plus |
3R | 32079331 | 3R | 13756889..13757027 | 82..220 | 695 | 100 | Plus |
3R | 32079331 | 3R | 13760245..13760363 | 2348..2466 | 595 | 100 | Plus |
3R | 32079331 | 3R | 13760087..13760180 | 2255..2348 | 470 | 100 | Plus |
3R | 32079331 | 3R | 13756597..13756662 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 599..688 | 523..432 | 139 | 65.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1164 | 447..549 | 128 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6840 | 378..477 | 119 | 60.4 | Plus |
BO17150.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:22 Download gff for
BO17150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RF | 4233..6716 | 9..2494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:42:06 Download gff for
BO17150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RG | 3993..6461 | 17..2487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:12 Download gff for
BO17150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RF | 4242..6710 | 17..2487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:46 Download gff for
BO17150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RG | 3931..6399 | 17..2487 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:46 Download gff for
BO17150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13756597..13756662 | 17..82 | 100 | -> | Plus |
3R | 13756890..13757027 | 83..220 | 100 | -> | Plus |
3R | 13757183..13757476 | 221..514 | 100 | -> | Plus |
3R | 13757553..13757783 | 515..745 | 100 | -> | Plus |
3R | 13758458..13759783 | 746..2071 | 100 | -> | Plus |
3R | 13759844..13760026 | 2072..2254 | 100 | -> | Plus |
3R | 13760087..13760179 | 2255..2347 | 100 | -> | Plus |
3R | 13760245..13760362 | 2348..2465 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:42:06 Download gff for
BO17150.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9582319..9582384 | 17..82 | 100 | -> | Plus |
arm_3R | 9582612..9582749 | 83..220 | 100 | -> | Plus |
arm_3R | 9582905..9583198 | 221..514 | 100 | -> | Plus |
arm_3R | 9583275..9583505 | 515..745 | 100 | -> | Plus |
arm_3R | 9584180..9585505 | 746..2071 | 100 | -> | Plus |
arm_3R | 9585566..9585748 | 2072..2254 | 100 | -> | Plus |
arm_3R | 9585809..9585901 | 2255..2347 | 100 | -> | Plus |
arm_3R | 9585967..9586084 | 2348..2465 | 100 | -> | Plus |
BO17150.3prime Sequence
654 bp (605 high quality bases) assembled on 2006-10-13
> BO17150.3prime
ATGGTCTAGAAAGCTTGCGTTGTGACTAGTGGGATTTCCGGCCACGATCT
TGCTGACTTGCATCACCTGTTGGGCCAGGATTTGGTTGAGTTGCAGCAGG
TGCTCGCGCTGCTTCTTCTCGGCGTTGATTTTGCTCGGGGGCAGGCTTTC
GTTTTCATTGCTGCTAATGGGCGCCTCAGCCAGCATTTTCTTGATGGACT
CGACCTTCTCCTGACGACGCTTCTTTTCCTCCGGCGACAGCTCGGGCGTT
GTTTCAGGTATGTAACGCTCGGGTATGACTATTTTGTTCGGTGCCAGCAG
CAAATTGTCTATGGTGTTCTCGGATATCTTTTCGCCCTGTCCCAAAGCAG
AACGAACGACATCAGGAGCATTCATTCGCGGTCGCAGGGCCACCTCCATA
TCCAAATCATCGCGAGCTCTCCAGTTGGTGTTATTTCGATTCATATCGTT
TTCGGCCTGCACCTTTTCCATGGCTTTCTGATTGACATTGTTTGGCGCAG
TGTAGTGTCGCCTCTTCTCCCTTGGAACCGCTCTGCGATGCTTGTGGTGC
GGTGGCACCTTCTCCACCACCTTCTCGGTGTCCTCCGATGCCGAACCGGC
GGACATTTCGTTGGAGATCTGGCGGGCAGCAACGCTCTGGGACACTGGCT
CCGG
BO17150.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9322-PA | 2472 | CG9322-RA | 1834..2469 | 654..19 | 3105 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34383-RK | 9215 | CG34383-RK | 6163..6798 | 654..19 | 3135 | 99.5 | Minus |
CG34383-RJ | 10048 | CG34383-RJ | 6996..7631 | 654..19 | 3135 | 99.5 | Minus |
CG34383-RH | 9067 | CG34383-RH | 6025..6660 | 654..19 | 3135 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13759562..13759783 | 654..433 | 1065 | 98.6 | Minus |
3R | 32079331 | 3R | 13759844..13760026 | 432..250 | 915 | 100 | Minus |
3R | 32079331 | 3R | 13760245..13760363 | 156..38 | 595 | 100 | Minus |
3R | 32079331 | 3R | 13760087..13760180 | 249..156 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:51:52 has no hits.
BO17150.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:23 Download gff for
BO17150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9322-PA | 1834..2472 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:34:59 Download gff for
BO17150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RH | 6025..6666 | 10..654 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:23:15 Download gff for
BO17150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RH | 6025..6666 | 10..654 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:23:15 Download gff for
BO17150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13759562..13759783 | 433..654 | 98 | -> | Minus |
3R | 13759844..13760026 | 250..432 | 100 | -> | Minus |
3R | 13760087..13760179 | 157..249 | 100 | -> | Minus |
3R | 13760245..13760362 | 39..156 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:34:59 Download gff for
BO17150.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9585284..9585505 | 433..654 | 98 | -> | Minus |
arm_3R | 9585566..9585748 | 250..432 | 100 | -> | Minus |
arm_3R | 9585809..9585901 | 157..249 | 100 | -> | Minus |
arm_3R | 9585967..9586084 | 39..156 | 100 | -> | Minus |
BO17150.5prime Sequence
617 bp (560 high quality bases) assembled on 2006-10-13
> BO17150.5prime
GAAGTTATCAGTCGACATGCGGCACACCGGAAGTAGGGCGGAAATCGATA
TGCTGGAACGCGAGACAAGCAGTCAGATCAGGAACTTGGATGTCTCGGCC
GGGGATTTGCTGAGTCGCACCCACGAGGAGCTGGTCCTTTTGCTGATTCA
GTTGAGGAGACAGAGTAGCCAGACTGCCAGGGCCATCGAGCAGTGCTGCA
GCGATATCCATGATGTGCAGAATCGCCTGCGAAGTGCCGAGGGTTTGACC
AGAGCCGAGAGTATCCAGCGTTTGGACTACTTGAAGCAGCACCTTTTGGA
CCTGGAGCGGCACTACGAGAAGAGCAAGCCGCTGGTCAATTTGGTGGACA
ACATGGTCAAGTTGGGCTCACTGTATCGCAACGATGCAAACGGCAGGGTC
CAACCAGCCACACTGGATCGCCTGGAGTTCAATCAGCGGATGCAGGAGCA
GCAAATGCTGCAAGAGGAGCAGCAGCAGTGGGAGCGTCTCAGTCCCAATC
AGGCAGAGTTGCAGGCCAAGGTGCGTGAGCTCTACCACCTGGATCAGCTG
CTGCAGGAGGAGTCGGGCACTTTGCAGAGTTTGCAGCGGGACAAGGAAGA
TCTCGAGCGAGCCTTGG
BO17150.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9322-PA | 2472 | CG9322-RA | 1..601 | 17..617 | 2980 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34383-RL | 6840 | CG34383-RL | 3993..4593 | 17..617 | 2990 | 99.8 | Plus |
CG34383-RK | 9215 | CG34383-RK | 4330..4930 | 17..617 | 2990 | 99.8 | Plus |
CG34383-RJ | 10048 | CG34383-RJ | 5163..5763 | 17..617 | 2990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13757180..13757477 | 218..515 | 1490 | 100 | Plus |
3R | 32079331 | 3R | 13756889..13757027 | 82..220 | 695 | 100 | Plus |
3R | 32079331 | 3R | 13757551..13757655 | 513..617 | 510 | 99 | Plus |
3R | 32079331 | 3R | 13756597..13756662 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 15:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 599..688 | 523..432 | 139 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6840 | 378..477 | 119 | 60.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1164 | 447..549 | 119 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2364 | 432..485 | 108 | 66.7 | Plus |
BO17150.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:23 Download gff for
BO17150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9322-PA | 1..601 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:35:05 Download gff for
BO17150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RJ | 5154..5763 | 9..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:24:30 Download gff for
BO17150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34383-RJ | 5154..5763 | 9..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:24:30 Download gff for
BO17150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13756588..13756662 | 9..82 | 94 | -> | Plus |
3R | 13756890..13757027 | 83..220 | 100 | -> | Plus |
3R | 13757183..13757476 | 221..514 | 100 | -> | Plus |
3R | 13757553..13757655 | 515..617 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:35:05 Download gff for
BO17150.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9582310..9582384 | 9..82 | 94 | -> | Plus |
arm_3R | 9582612..9582749 | 83..220 | 100 | -> | Plus |
arm_3R | 9582905..9583198 | 221..514 | 100 | -> | Plus |
arm_3R | 9583275..9583377 | 515..617 | 99 | | Plus |
BO17150.pep Sequence
Translation from 16 to 2503
> BO17150.pep
MRHTGSRAEIDMLERETSSQIRNLDVSAGDLLSRTHEELVLLLIQLRRQS
SQTARAIEQCCSDIHDVQNRLRSAEGLTRAESIQRLDYLKQHLLDLERHY
EKSKPLVNLVDNMVKLGSLYRNDANGRVQPATLDRLEFNQRMQEQQMLQE
EQQQWERLSPNQAELQAKVRELYQLDQLLQEESGTLQSLQRDKEDLERAL
GGLRARIHDSNATPMALEAAKKQQHILERELSRVHQLLAENSKKLEQTVA
GNARLEQELLLLRQKVQAVRGSTTNGMNGDGSHINGDQTAAVLASELERV
QSLVGDMQRQRHELSSAVRQLTENSTRLYQEIGNKEMNGGGSTNGSLKKR
SNSTSWTETDLDANMLRCGSRQQLNDSTLNLSTPLYVDTNSSTKLSDYNR
YNGSSDAIEMSGVDSDGFLDSNPFALGLEKQEIKTVRIVKRESERRNRDR
SERGLSNSIQNLDQVLEEEQYAQQQREQQLYAQNLEEPMTNGHHSRSKSL
PRNYSEPPKQRHSRHLNGGKQNGHHYNGGYDYDRNSNYEHQPPPPPAPQS
NGHHHNHQQREQREHLNPLANAYFAKQLQQQANPSRDSARVALRTKTDSL
QSLNKSLTDISPEPVFQSVAARQIINEMSAGSASEDTEKVVEKVPPHHKH
RRAVPREKRRHYTAPNNVNQKAMEKVQAENDMNRNNTNWRARDDLDMEVA
LRPRMNAPDVVRSALGQGEKISENTIDNLLLAPNKIVIPERYIPETTPEL
SPEEKKRRQEKVESIKKMLAEAPISSNENESLPPSKINAEKKQREHLLQL
NQILAQQVMQVSKIVAGNPTSHNASFLDH
BO17150.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34383-PK | 2020 | CG34383-PK | 1198..2020 | 1..823 | 4199 | 100 | Plus |
CG34383-PG | 2042 | CG34383-PG | 1220..2042 | 1..823 | 4199 | 100 | Plus |
CG34383-PF | 2020 | CG34383-PF | 1198..2020 | 1..823 | 4199 | 100 | Plus |
CG34383-PD | 2020 | CG34383-PD | 1198..2020 | 1..823 | 4199 | 100 | Plus |
CG34383-PE | 2050 | CG34383-PE | 1198..2021 | 1..824 | 4158 | 99.3 | Plus |