Clone Sequence Records
BO17156.3prime Sequence
745 bp (675 high quality bases) assembled on 2006-10-13
> BO17156.3prime
ATGGTCTAGAAAGCTTGCATTTAGCCATCTGGAGGTTTCCGTGGCAGTCA
GACCCTCGGAGCGTAGACGTTGCAGCATGGGACGATAAATGTCGGGAGTG
AAGGGCAGCAGGACGCCGCGTTCCTGGATCTCACCGTCTAGGATCATTTT
GGCTGCGATGGCAGCCGGCTTGCCCACAGTCATCGCCATGGCGGAGTGAC
CCTGGGGCTGTCCGTAGACCACAAAATTGATTCCACGCTCCTCACGACGA
CCATCGGGCCAACGGATGCCAACTTCATGGCGCAGCACCACCAGGTCGCG
TTCATCCCGCTCGAAGGCAAGTCTCTTCGAGAGATAGTGACTAAGCGTAT
CCAGCGGAGTGTTGAGCTTCACCACAGGAGTATCATCCAGCAGACCCAAG
CTCTCGATGCCGTCCACATCTCCAATGCGCTCAGTCAGCTTCTGCTTGAG
GTTCTCGTAGAAGATGGTCGAGTCCGACATGCCCATTAGATGGATCACCA
GCTGGCGCCACGTGACATCCGGCCCACTGGGATGTAGCAATGCATGTGGC
TCCGGATCGATAAGTCCCAAGAGCTGCATAGGCTTAATCGATTCCGAAAA
GCCCTTATAACGTATGGTTCCACGAAGCAAAGTGTGCACATCCCTGCCTA
AGCCGTAAAGGTTGCCGTATTTGGTGGAATCCCTGTTGGGGAAACCCTCC
AGGGCGAATCCTGNCAGGAAATCAAAGCTGCGAGGACTTGACATG
BO17156.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7144-PA | 2787 | CG7144-RA | 2058..2784 | 745..19 | 3566 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LKR-RB | 3495 | CG7144-RB | 2183..2909 | 745..19 | 3594 | 99.6 | Minus |
| LKR-RA | 3264 | CG7144-RA | 2183..2909 | 745..19 | 3594 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7792175..7792608 | 312..745 | 2144 | 99.5 | Plus |
| 2L | 23513712 | 2L | 7791936..7792116 | 132..312 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 7791761..7791877 | 19..135 | 570 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:54:10 has no hits.
BO17156.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:26 Download gff for
BO17156.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7144-PA | 2058..2787 | 15..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:06 Download gff for
BO17156.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LKR-RA | 2183..2919 | 8..745 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:13:42 Download gff for
BO17156.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LKR-RA | 2183..2919 | 8..745 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:13:42 Download gff for
BO17156.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7791751..7791876 | 8..134 | 95 | <- | Plus |
| 2L | 7791939..7792115 | 135..311 | 100 | <- | Plus |
| 2L | 7792175..7792608 | 312..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:06 Download gff for
BO17156.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7791751..7791876 | 8..134 | 95 | <- | Plus |
| arm_2L | 7791939..7792115 | 135..311 | 100 | <- | Plus |
| arm_2L | 7792175..7792608 | 312..745 | 99 | | Plus |
BO17156.5prime Sequence
810 bp (753 high quality bases) assembled on 2006-10-13
> BO17156.5prime
GAAGTTATCAGTCGACATGTGGCGAGTGATTCAACTGCGCGCAACAATCG
CGCATCCGTTCACCAGACAACGTCATAGTCGAGTGATTGCCATTCGGCGA
GAGGATCAGTCGGTGTGGGAGCGACGAGCTCCGTTTGGACCAACCCACGT
CCAGAAGTTGGTCAAGCAGAATGTCAAGGTCATAGTGCAGCCGTCCAATC
GTCGTGCCTACCCCATGCAGGCCTACATGCAGGCTGGAGCTCATATTCAG
GAGGACATCAGTGATGCTTCGGTGATATTCGGAGTGAAACAGGTGCCCAT
AGATGCACTGATTCCTGGGAAGACGTACTGCTTCTTTTCACACACGATTA
AAGCGCAGGAATCAAATATGCCGCTTCTGGATGCTATTTTGGAGAAGAAA
ATTCGGCTCATCGACTATGAGCGAATCATCGACGAACGCGGAGCACGACA
GGTGGCCTTTGGCAAATATGCCGGAGTGGCTGGCATGGTGAACATCCTGC
ACGGCATTGGACTGCGTCTTTTGGCCCTGGGACATCATACACCATTCATG
CACATTGGACCCGCTCATAACTATCGCAATTCCTCGATGGCTCGCCAGGC
AATCCGGGATTGTGGCTACGAGATCTCGCTTGGCATGATGCCCAAGTCCA
TTGGACCACTTACATTTGTGTTCACTGGCTCTGGAAATGTTTCCCAAGGT
GCCCAGGAGGTGTTCTCCGAGCTGCCCATTGAGTATGTTCCACCGGAGAT
GCTACGNCAGGTGGCCGAACATGGAAATCAAAATAAGCTTTACGGCTGCG
AGGTGAGCCG
BO17156.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:12:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7144-PA | 2787 | CG7144-RA | 1..794 | 17..810 | 3851 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LKR-RB | 3495 | CG7144-RB | 124..919 | 15..810 | 3909 | 99.4 | Plus |
| LKR-RA | 3264 | CG7144-RA | 124..919 | 15..810 | 3909 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7794148..7794528 | 776..396 | 1879 | 99.5 | Minus |
| 2L | 23513712 | 2L | 7794592..7794771 | 397..218 | 855 | 98.3 | Minus |
| 2L | 23513712 | 2L | 7795509..7795657 | 221..73 | 730 | 99.3 | Minus |
| 2L | 23513712 | 2L | 7795775..7795836 | 76..15 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:26:37 has no hits.
BO17156.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:27 Download gff for
BO17156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7144-PA | 1..794 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:39:51 Download gff for
BO17156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LKR-RA | 124..919 | 15..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:48 Download gff for
BO17156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LKR-RA | 124..919 | 15..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:48 Download gff for
BO17156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7794050..7794083 | 777..810 | 100 | <- | Minus |
| 2L | 7794148..7794526 | 398..776 | 99 | <- | Minus |
| 2L | 7794592..7794768 | 221..397 | 98 | <- | Minus |
| 2L | 7795510..7795653 | 77..220 | 100 | <- | Minus |
| 2L | 7795775..7795836 | 15..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:39:51 Download gff for
BO17156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7794050..7794083 | 777..810 | 100 | <- | Minus |
| arm_2L | 7794148..7794526 | 398..776 | 99 | <- | Minus |
| arm_2L | 7794592..7794768 | 221..397 | 98 | <- | Minus |
| arm_2L | 7795510..7795653 | 77..220 | 100 | <- | Minus |
| arm_2L | 7795775..7795836 | 15..76 | 100 | | Minus |
BO17156.complete Sequence
2818 bp assembled on 2007-03-23
GenBank Submission: FJ638751
> BO17156.complete
GAAGTTATCAGTCGACATGTGGCGAGTGATTCAACTGCGCGCAACAATCG
CGCATCCGTTCACCAGACAACGTCATAGTCGAGTGATTGCCATTCGGCGA
GAGGATCAGTCGGTGTGGGAGCGACGAGCTCCGTTTGGACCAACCCACGT
CCAGAAGTTGGTCAAGCAGAATGTCAAGGTCATAGTGCAGCCGTCCAATC
GTCGTGCCTACCCCATGCAGGCCTACATGCAGGCTGGAGCTCATATTCAG
GAGGACATCAGTGATGCTTCGGTGATATTCGGAGTGAAACAGGTGCCCAT
AGATGCACTGATTCCTGGGAAGACGTACTGCTTCTTTTCACACACGATTA
AAGCGCAGGAATCAAATATGCCGCTTCTGGATGCTATTTTGGAGAAGAAA
ATTCGGCTCATCGACTATGAGCGAATCATCGACGAACGCGGAGCACGACA
GGTGGCCTTTGGCAAATATGCCGGAGTGGCTGGCATGGTGAACATCCTGC
ACGGCATTGGACTGCGTCTTTTGGCCCTGGGACATCATACACCATTCATG
CACATTGGACCCGCTCATAACTATCGCAATTCCTCGATGGCTCGCCAGGC
AATCCGGGATTGTGGCTACGAGATCTCGCTTGGCATGATGCCCAAGTCCA
TTGGACCACTTACATTTGTGTTCACTGGCTCTGGAAATGTTTCCCAAGGT
GCCCAGGAGGTGTTCTCCGAGCTGCCCATTGAGTATGTTCCACCGGAGAT
GCTACGCAAGGTGGCCGAACATGGAAATCAAAATAAGCTTTACGGCTGCG
AGGTGAGCCGATCGGATCATCTGGAGCGTCGTGAGGGCGGCGGATTTGAT
GCCAAGGAATACGATGAGTTCCCCGAACGATACATCTCCACCTTTAGCAC
GAAGATAGCTCCGTACGCATCGGTTATTGTTAACGGCATCTACTGGGCCG
TAGGCAGTCCCAAGTTGATCAGCATTCCGGATGCCAAGAATCTGCTACGT
CCGGCAAACACTCCCTGGCTGCCGACGAGCAAGGGTAGTCCGGCTTTGCC
ACATCGCATGCTGGCCATTTGCGACATTTCCGCTGATCCCGGTGGCTCCA
TTGAGTTTATGAACGAGTGCACCACCATCGACACTCCATTCTGCTTGTAC
GATGCGGACAGGAATAAGGATACCAAGAGCTTTAAGGGACCCGGAGTTTT
AGTCTGTTCGATTGATAATATGCCTACACAATTGCCCAGAGAATCGACGG
ATTTGTTTGGAGAGCTGTTGGCTCCTCATGTTCATGATATTATAAAGAGC
GATGCCAAGAAGCCGTTGGCAGAGGAGAACTTCTCATACCCCATTCAGTC
GGCTATTATCGCCAGCAACGGTCAGCTGACGGAGGGCTTCCAGTATATTC
AGGAGCTCCGAGAGTCGCAAAGCCACAGATCGCGCCACAAGATGGAGGGA
AGTTCGGAGTCTGACAAGAAGGTCTTGGTTCTGGGAGCTGGCATGGTGTC
CGCTCCACTCGTAGAGTGGCTTCATCGCGAAAAGGACGTCAGCATAACGG
TTTGCTCGCAGGTCAAGGAGGAAGCCGATCGCCTGGCTCAGCAGTATGCT
GGAGTGGACAGCGTCTATCTGGATGTGAACGAGAGCACTGGTCATCTGCA
GGAGCTGTGCGGCAGGGCAGATGTAGTAGTTTCCCTGCTGCCCTACAGTC
TCCATGGCATGGTAGCACGTTATTGCGTGGCAGAGGGCACCCACATGGTT
ACCGCAAGTTATCTGAACGACGAGATCTCCGGTTTGCACGAGGAGGCCAA
GGCCAAAGGTGTGACCATCATGAACGAGGTGGGCTTGGATCCTGGTATCG
ATCACCTTCTGGCACTGGAGTGCATCCACGAGGTGCAGGACAAGGGAGCC
GTTGTCGAGTCCTTCGTGAGCTATTGTGGCGGTCTGCCTGCACCGGAGCA
TTCCAATAATGCCCTAAGATATAAGTTCTCTTGGTCACCCAGGGGAGTAC
TTCTCAACACACTTTCCGCTGCAAAATATCTGAGTCAGGGACAAATTGTG
GAGATTTCTGGAGGTGGGGAACTCATGTCAAGTCCTCGCAGCTTGGATTT
CCTGCCAGGATTCGCCCTGGAGGGTTTCCCCAACAGGGATTCCACCAAAT
ACGGCAACCTTTACGGCTTAGGCAGGGATGTGCACACTTTGCTTCGTGGA
ACCATACGTTATAAGGGCTTTTCGGAATCGATTAAGCCTATGCAGCTCTT
GGGACTTATCGATCCGGAGCCACATGCATTGCTACATCCCAGTGGGCCGG
ATGTCACGTGGCGCCAGCTGGTGATCCATCTAATGGGCATGTCGGACTCG
ACCATCTTCTACGAGAACCTCAAGCAGAAGCTGACTGAGCGCATTGGAGA
TGTGGACGGCATCGAGAGCTTGGGTCTGCTGGATGATACTCCTGTGGTGA
AGCTCAACACTCCGCTGGATACGCTTAGTCACTATCTCTCGAAGAGACTT
GCCTTCGAGCGGGATGAACGCGACCTGGTGGTGCTGCGCCATGAAGTTGG
CATCCGTTGGCCCGATGGTCGTCGTGAGGAGCGTGGAATCAATTTTGTGG
TCTACGGACAGCCCCAGGGTCACTCCGCCATGGCGATGACTGTGGGCAAG
CCGGCTGCCATCGCAGCCAAAATGATCCTAGACGGTGAGATCCAGGAACG
CGGCGTCCTGCTGCCCTTCACTCCCGACATTTATCGTCCCATGCTGCAAC
GTCTACGCTCCGAGGGTCTGACTGCCACGGAAACCTCCAGATGGCTAAAT
GCAAGCTTTCTAGACCAT
BO17156.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LKR-RB | 2787 | CG7144-PB | 1..2784 | 17..2800 | 13815 | 99.7 | Plus |
| LKR-RA | 2787 | CG7144-PA | 1..2784 | 17..2800 | 13815 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LKR-RB | 3495 | CG7144-RB | 124..2909 | 15..2800 | 13825 | 99.7 | Plus |
| LKR-RA | 3264 | CG7144-RA | 124..2909 | 15..2800 | 13825 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7792175..7793331 | 2507..1351 | 5740 | 99.7 | Minus |
| 2L | 23513712 | 2L | 7793508..7794083 | 1352..777 | 2880 | 100 | Minus |
| 2L | 23513712 | 2L | 7794148..7794528 | 776..396 | 1905 | 100 | Minus |
| 2L | 23513712 | 2L | 7791936..7792116 | 2687..2507 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 7794592..7794771 | 397..218 | 855 | 98.3 | Minus |
| 2L | 23513712 | 2L | 7795509..7795657 | 221..73 | 730 | 99.3 | Minus |
| 2L | 23513712 | 2L | 7791761..7791877 | 2800..2684 | 570 | 99.1 | Minus |
| 2L | 23513712 | 2L | 7795775..7795836 | 76..15 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:12:09 has no hits.
BO17156.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:35 Download gff for
BO17156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7144-RA | 1..2787 | 17..2804 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:23 Download gff for
BO17156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7144-RA | 123..2918 | 15..2811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:26 Download gff for
BO17156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LKR-RA | 126..2909 | 17..2802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:35 Download gff for
BO17156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7144-RA | 123..2918 | 15..2811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:15 Download gff for
BO17156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LKR-RA | 126..2909 | 17..2802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:15 Download gff for
BO17156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7794592..7794768 | 221..397 | 98 | <- | Minus |
| 2L | 7791759..7791876 | 2685..2802 | 97 | <- | Minus |
| 2L | 7791939..7792115 | 2508..2684 | 100 | <- | Minus |
| 2L | 7795510..7795653 | 77..220 | 100 | <- | Minus |
| 2L | 7795775..7795834 | 17..76 | 100 | | Minus |
| 2L | 7792175..7793330 | 1352..2507 | 99 | <- | Minus |
| 2L | 7793509..7794083 | 777..1351 | 100 | <- | Minus |
| 2L | 7794148..7794526 | 398..776 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:26 Download gff for
BO17156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7794592..7794768 | 221..397 | 98 | <- | Minus |
| arm_2L | 7795510..7795653 | 77..220 | 100 | <- | Minus |
| arm_2L | 7795775..7795834 | 17..76 | 100 | | Minus |
| arm_2L | 7791759..7791876 | 2685..2802 | 97 | <- | Minus |
| arm_2L | 7791939..7792115 | 2508..2684 | 100 | <- | Minus |
| arm_2L | 7792175..7793330 | 1352..2507 | 99 | <- | Minus |
| arm_2L | 7793509..7794083 | 777..1351 | 100 | <- | Minus |
| arm_2L | 7794148..7794526 | 398..776 | 100 | <- | Minus |
BO17156.pep Sequence
Translation from 16 to 2818
> BO17156.pep
MWRVIQLRATIAHPFTRQRHSRVIAIRREDQSVWERRAPFGPTHVQKLVK
QNVKVIVQPSNRRAYPMQAYMQAGAHIQEDISDASVIFGVKQVPIDALIP
GKTYCFFSHTIKAQESNMPLLDAILEKKIRLIDYERIIDERGARQVAFGK
YAGVAGMVNILHGIGLRLLALGHHTPFMHIGPAHNYRNSSMARQAIRDCG
YEISLGMMPKSIGPLTFVFTGSGNVSQGAQEVFSELPIEYVPPEMLRKVA
EHGNQNKLYGCEVSRSDHLERREGGGFDAKEYDEFPERYISTFSTKIAPY
ASVIVNGIYWAVGSPKLISIPDAKNLLRPANTPWLPTSKGSPALPHRMLA
ICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSFKGPGVLVCSID
NMPTQLPRESTDLFGELLAPHVHDIIKSDAKKPLAEENFSYPIQSAIIAS
NGQLTEGFQYIQELRESQSHRSRHKMEGSSESDKKVLVLGAGMVSAPLVE
WLHREKDVSITVCSQVKEEADRLAQQYAGVDSVYLDVNESTGHLQELCGR
ADVVVSLLPYSLHGMVARYCVAEGTHMVTASYLNDEISGLHEEAKAKGVT
IMNEVGLDPGIDHLLALECIHEVQDKGAVVESFVSYCGGLPAPEHSNNAL
RYKFSWSPRGVLLNTLSAAKYLSQGQIVEISGGGELMSSPRSLDFLPGFA
LEGFPNRDSTKYGNLYGLGRDVHTLLRGTIRYKGFSESIKPMQLLGLIDP
EPHALLHPSGPDVTWRQLVIHLMGMSDSTIFYENLKQKLTERIGDVDGIE
SLGLLDDTPVVKLNTPLDTLSHYLSKRLAFERDERDLVVLRHEVGIRWPD
GRREERGINFVVYGQPQGHSAMAMTVGKPAAIAAKMILDGEIQERGVLLP
FTPDIYRPMLQRLRSEGLTATETSRWLNASFLDH
BO17156.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LKR-PB | 928 | CG7144-PB | 1..928 | 1..928 | 4842 | 100 | Plus |
| LKR-PA | 928 | CG7144-PA | 1..928 | 1..928 | 4842 | 100 | Plus |
