Clone Sequence Records
BO17161.3prime Sequence
290 bp (290 high quality bases) assembled on 2006-10-13
> BO17161.3prime
ATGGTCTAGAAAGCTTGCAAGACCGCATTCAAAGGGCACAATGTAGTCGT
CTAGCAGCCGCACGCGGCGGAGTCTTCCTTGCGAGTCCACGCCCACGTCA
CCGCCACTGGATGCAGTCTGCTGTCCGACTTTGAGCCCCTCCTCCTCCTC
ATTCCTCAGCTCAACCTGGTGTCGCTGCACCACCAACATGCCGGCTGCTA
TTGCCGCCTCCTGGCGCAGCCATCCGGACATGATCCAGACACGGCGAATG
CAGGTTGTCAGTGCGAATCGTTCCATGTCGACTGATAACT
BO17161.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-PA | 261 | CG33293-RA | 1..258 | 276..19 | 1290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-RA | 661 | CG33293-RA | 111..368 | 276..19 | 1290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5240307..5240564 | 19..276 | 1290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:01:36 has no hits.
BO17161.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:31 Download gff for
BO17161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-PA | 1..261 | 16..276 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:11 Download gff for
BO17161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..281 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:18 Download gff for
BO17161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..281 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:18 Download gff for
BO17161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5240300..5240570 | 12..281 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:11 Download gff for
BO17161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1066022..1066292 | 12..281 | 97 | | Plus |
BO17161.5prime Sequence
290 bp (290 high quality bases) assembled on 2006-10-13
> BO17161.5prime
GAAGTTATCAGTCGACATGGAACGATTCGCACTGACAACCTGCATTCGCC
GTGTCTGGATCATGTCCGGATGGCTGCGCCAGGAGGCGGCAATAGCAGCC
GGCATGTTGGTGGTGCAGCGACACCAGGTTGAGCTGAGGAATGAGGAGGA
GGAGGGGCTCAAAGTCGGACAGCAGACTGCATCCAGTGGCGGTGACGTGG
GCGTGGACTCGCAAGGAAGACTCCGCCGCGTGCGGCTGCTAGACGACTAC
ATTGTGCCCTTTGAATGCGGTCTTGCAAGCTTTCTAGACC
BO17161.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-PA | 261 | CG33293-RA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-RA | 661 | CG33293-RA | 111..368 | 17..274 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5240307..5240564 | 274..17 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:46:35 has no hits.
BO17161.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:32 Download gff for
BO17161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-PA | 1..261 | 17..277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:07:57 Download gff for
BO17161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..281 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:14 Download gff for
BO17161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..281 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:14 Download gff for
BO17161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5240300..5240570 | 12..281 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:07:57 Download gff for
BO17161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1066022..1066292 | 12..281 | 97 | | Minus |
BO17161.complete Sequence
292 bp assembled on 2006-10-11
GenBank Submission: FJ634048
> BO17161.complete
GAAGTTATCAGTCGACATGGAACGATTCGCACTGACAACCTGCATTCGCC
GTGTCTGGATCATGTCCGGATGGCTGCGCCAGGAGGCGGCAATAGCAGCC
GGCATGTTGGTGGTGCAGCGACACCAGGTTGAGCTGAGGAATGAGGAGGA
GGAGGGGCTCAAAGTCGGACAGCAGACTGCATCCAGTGGCGGTGACGTGG
GCGTGGACTCGCAAGGAAGACTCCGCCGCGTGCGGCTGCTAGACGACTAC
ATTGTGCCCTTTGAATGCGGTCTTGCAAGCTTTCTAGACCAT
BO17161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-RA | 261 | CG33293-PA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-RA | 661 | CG33293-RA | 111..368 | 17..274 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5240307..5240564 | 274..17 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:00:43 has no hits.
BO17161.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:47 Download gff for
BO17161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 1..261 | 17..277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:19 Download gff for
BO17161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..281 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:06 Download gff for
BO17161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 111..368 | 17..276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:47 Download gff for
BO17161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..281 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:21 Download gff for
BO17161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 111..368 | 17..276 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:21 Download gff for
BO17161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5240304..5240564 | 17..276 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:06 Download gff for
BO17161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1066026..1066286 | 17..276 | 99 | | Minus |
BO17161.pep Sequence
Translation from 16 to 292
> BO17161.pep
MERFALTTCIRRVWIMSGWLRQEAAIAAGMLVVQRHQVELRNEEEEGLKV
GQQTASSGGDVGVDSQGRLRRVRLLDDYIVPFECGLASFLDH
BO17161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-PA | 86 | CG33293-PA | 1..86 | 1..86 | 441 | 100 | Plus |
