Clone BO17163 Report

Search the DGRC for BO17163

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:63
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO17163.pep: validated not full length
Sequenced Size:2866

Clone Sequence Records

BO17163.3prime Sequence

777 bp (742 high quality bases) assembled on 2006-10-13

> BO17163.3prime
ATGGTCTAGAAAGCTTGCCTGCTCGGCCATCATGCAAAACTTGTCGGCCA
TCAGGGTGAGCACCTTTTCCAGTTTGTTGTGCCGATCTTCGGCCTTGGCC
GTTGCTCCGGAACTGCCCCATAGGAACTTGACATGGAACTCGGTTCGAAA
AGCATCAGCTAGAAGCTCATCGAGCCGAGGACTAGCATCCTCCAGGATAA
TCTTGGCATTCTTTCGATACAGTTCCAAGTTCTTCAGGAAGCCACGCGAT
GCATCCAGGTGCTGGAAATTAATGGTCATGCCAAAGTCATCCGCTTTCGA
CTCCCAAGGAGCAATACAGGTGTGGTACAGAGCTGGGCGATCGTCAATGT
TGGAGTGGTTTATGATGTCCATAACGGGTCGATCGATCAGTAGTGCATAC
AGCAGAACATGGGGAACGGTTGTGTTTGGAGCCTGTGGATTGGAGGCCTC
GTTCATGATGCTCAACGTGGGTCGCAACTTGGCCTCGAAGGTGAAGGCGC
TGTCCGTGTACTGTTGCCTCAGGATGTGCCAGGCCTGGTCGAGCTTTTGG
ATCTGTTGCATGCACAGGCCCAACATGATGGCGCAGAATCCAAACAGATT
GCCGAGAGCCGTCTTAGTTTCCACTGCGATCTGAATCCATTTACTGAGCA
GTTGGGCTCGGTCCAGATCCGTTTGACAGGTGAGTATGGTCACAGCGACC
ATCAGCTTGATGCACTGCGTCCGCTCTATTATGTCCTCCCTAAAGACCTT
TCCATGGGGCAGTGTTAGCAGCTCAAG

BO17163.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-PA 2835 CG9098-RA 2074..2832 777..19 3770 99.8 Minus
CG9098-PB 2262 CG9098-RB 1501..2259 777..19 3770 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-RC 3470 CG9098-RC 2165..2923 777..19 3780 99.9 Minus
CG9098-RB 2998 CG9098-RB 1834..2592 777..19 3780 99.9 Minus
CG9098-RA 3481 CG9098-RA 2176..2934 777..19 3780 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6008096..6008505 146..555 2035 99.8 Plus
2L 23513712 2L 6008755..6008979 553..777 1125 100 Plus
2L 23513712 2L 6007911..6008038 19..146 640 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:12:36 has no hits.

BO17163.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:33 Download gff for BO17163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-PB 1501..2262 15..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:52:00 Download gff for BO17163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 2176..2940 12..777 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:41:18 Download gff for BO17163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 2176..2940 12..777 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:41:18 Download gff for BO17163.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6007905..6008037 12..145 98 <- Plus
2L 6008096..6008502 146..552 99 <- Plus
2L 6008755..6008979 553..777 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:52:00 Download gff for BO17163.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6007905..6008037 12..145 98 <- Plus
arm_2L 6008096..6008502 146..552 99 <- Plus
arm_2L 6008755..6008979 553..777 100   Plus

BO17163.5prime Sequence

677 bp (676 high quality bases) assembled on 2006-10-13

> BO17163.5prime
GAAGTTATCAGTCGACATGGGCAACACCCAAGCCCGACAACTGGAGAACC
GCCAAGTGCCGAATCGGAGGAGCAGCATTTTGTGGAACTTTCGGTACTCG
AACACAGTGCGTCGTCGCGAAGATTTGGCCGTAATGGTGCACAACTCTAG
GATGAGCATAAGCGAGTGGCTGGACCTTCTGGAGCTGCAGCAGTACGAAG
GAAACCTACAGGAGTTCAGCACCGTGGACGATGTGGTGGACATCACGGAC
AAGGAGCTGAAGCAATTTGGCGTGCGCGGTGCCCATCGCCAGAGGATGGT
CAATAGTTTGCTGGGTGTTCGTGCCAAGCGAAGGCAGTCCATGAATCTGG
AAGCAATGAGCAGTGCGCCGCGAGCAGTGCCACGGCGCAAGAAATCGTGT
CCATTGGTGTATCTGGGTGAGAATCCCCAAGATATGGCGGGAAGCGGCGA
TAGCGGACCCGGCGTGATTACCACCAAGAGTGGCAAGGTCCTGAAGCAAC
TAACCTTTGATGAGACCTCCACCATCTACGAGGAACTAAGGCCGCGCTCC
AAGTGCAACAGTCCCCATTGGGCCATCGAAGACAGCAGGATGGAGGGCTA
TGGGAGCAGCAATGCCACCACTCCGCTGGCCACCGCCCAGCCCAGTCCCA
GCGAGCAACAGGAGGCCATCGCCCTGA

BO17163.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-PA 2835 CG9098-RA 1..661 17..677 3130 98.9 Plus
CG9098-PB 2262 CG9098-RB 1..88 590..677 440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-RA 3481 CG9098-RA 101..763 15..677 3210 98.9 Plus
CG9098-RC 3470 CG9098-RC 101..752 15..677 3035 97.3 Plus
CG9098-RB 2998 CG9098-RB 270..421 526..677 745 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6011555..6011728 525..352 810 97.7 Minus
2L 23513712 2L 6010519..6010670 677..526 745 99.3 Minus
2L 23513712 2L 6011783..6011937 353..199 745 98.7 Minus
2L 23513712 2L 6011985..6012111 201..75 635 100 Minus
2L 23513712 2L 6012178..6012238 75..15 305 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:54:17 has no hits.

BO17163.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:33 Download gff for BO17163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-PA 1..660 17..676 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:08 Download gff for BO17163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 101..762 15..676 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:14:25 Download gff for BO17163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 101..762 15..676 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:14:25 Download gff for BO17163.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6010520..6010670 526..676 99 <- Minus
2L 6011555..6011726 354..525 97 <- Minus
2L 6011783..6011935 201..353 98 <- Minus
2L 6011986..6012111 75..200 100 <- Minus
2L 6012179..6012238 15..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:08 Download gff for BO17163.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6010520..6010670 526..676 99 <- Minus
arm_2L 6011555..6011726 354..525 97 <- Minus
arm_2L 6011783..6011935 201..353 98 <- Minus
arm_2L 6011986..6012111 75..200 100 <- Minus
arm_2L 6012179..6012238 15..74 100   Minus

BO17163.complete Sequence

2866 bp assembled on 2006-12-18

GenBank Submission: FJ634049

> BO17163.complete
GAAGTTATCAGTCGACATGGGCAACACCCAAGCCCGACAACTGGAGAACC
GCCAAGTGCCGAATCGGAGGAGCAGCATTTTGTGGAACTTTCGGTACTCG
AACACAGTGCGTCGTCGCGAAGATTTGGCCGTAATGGTGCACAACTCTAG
GATGAGCATAAGCGAGTGGCTGGACCTTCTGGAGCTGCAGCAGTACGAAG
GAAACCTACAGGAGTTCAGCACCGTGGACGATGTGGTGGACATCACGGAC
AAGGAGCTGAAGCAATTTGGCGTGCGCGGTGCCCATCGCCAGAGGATGGT
CAATAGTTTGCTGGGTGTTCGTGCCAAGCGAAGGCAGTCCATGAATCTGG
AAGCAATGAGCAGTGCGCCGCGAGCAGTGCCACGGCGCAAGAAATCGTGT
CCATTGGTGTATCTGGGTGAGAATCCCCAAGATATGGCGGGAAGCGGCGA
TAGCGGACCCGGCGTGATTACCACCAAGAGTGGCAAGGTCCTGAAGCAAC
TAACCTTTGATGAGACCTCCACCATCTACGAGGAACTAAGGCCGCGCTCC
AAGTGCAACAGTCCCCATTGGGCCATCGAAGACAGCAGGATGGAGGGCTA
TGGGAGCAGCAATGCCACCACTCCGCTGGCCACCGCCCAGCCCAGTCCCA
GCGAGCAACAGGAGGCCATCGCCCTGAAGAAGGCGCTCGAGTGGGAGCTG
AGTTTGGACGCCAGGGAGCTGCGTTCGCACGCCTGGTACCACGGCGCACT
GCCACGCCAGCGGGCCGAGGAGATCGTGCAGCGCGAGGGCGACTTCCTGG
TCCGCGACTGCGCCTCCCAGCCGGACAACTATGTGCTCAGCTGCCGGAGC
AAAGCGGCTGTACTGCACTTCGTACTTAATAAGTTGGTGCTTCAACCGGA
GACGGTTTACGAACGTGTGCAGTACCAGTTCGAGGAGGATGCCTTTGATA
CGGTGCCCGACCTAATTACCTTCTACGTGGGATCCGGCAAGCCCATCTCG
TCAGCATCGGGAGCGCTCATTCAGTTTCCCTGCAATCGCACCTATCCGCT
CTCCTTCTACGGCCACAAGATCGTGGGCAACCAACTGCACACGCAGATGC
TGGCCGGTCTGCGAGGTCTGAGTCCTCTGAACTCGCCGATGGGCAGCAAT
GGTGCAGTGGGAGCAGGTATGAACGCTACCTTTCGCTTCGAACCGCAGCA
GCAGCAGCAGCAACAGCTCTCGCCGATGGCTGGCTCACCAGCCAGTCCGC
ACTGCTCGCCGCCGAGGGCACGTAGAGAGGTGCCTCCACCGCCGCGGCTG
CCGTGCAAGAAGCAACAGCGCTCCCAGAGCCTCACACCGGCACAGGCCAT
GTTGGTCAGCAACATCAACAAGCTTCAGGAGCAACAACTACAGATGCAGG
AGCTTGAGAATGGCAATGGCAACGGAATAATGCGCTTCCAGACAATCGCC
AGGTGCAATCCGACCAGTGAGCAGCACCTGGAGAGCAAGTTCACAACCCA
CTCGCTGCCCAGACCCAACACTTCGGCGGCGCACGCTCTGCGCCAGCAAG
CGGTGGCCCGAATCTCGAGCCTGGCGAGAAACTGCAGCCTGGACTCGCCG
TCGGACTCACGGCCGCCCAGTCCGCCGCCCAAGCCACGCAAGGAACCCAT
GGCAGCGGTGTTGGCATACCAGGCCAGTGGATCCGACTCGGGGAATGGGT
CCGGTGATTCGGCTCTAGGGGATGCATGTGAGGCGAGCGTACAGCGGGGT
GTGATAATCAAGAATCCCCGATTCATGACCACTTCGGTCTCGAACGGAAC
GCTGAAGAGCTTCACGGAGTTCGACGTCCTGGCCGCTGAGGAAGAACTAT
TCACCATGGCCATAGAAGAAGTTAAAACAGCAAGCAAGTTTGACTTTGAG
AACTTTGTTACTTTGCTACTGCCATCTGTGGAGAACAAGCCCCTGGATGG
CGATGCCCTCAACACGTTCAAGATGATGCTTCTGGAGACGGGCCCAAAGC
TGCTGGCGGAGCACATCACTCGCATCGACATTGCCCTGTTTTTGGAGGAG
CCGTCGAACGAGGAGGACTACTATCTGAGCTGTTCGGGTCTTGAGCTGCT
AACACTGCCCCATGGAAAGGTCTTTAGGGAGGACATAATAGAGCGGACGC
AGTGCATCAAGCTGATGGTCGCTGTGACCATACTCACCTGTCAAACGGAT
CTGGACCGAGCCCAACTGCTCAGTAAATGGATTCAGATCGCAGTGGAAAC
TAAGACGGCTCTCGGCAATCTGTTTGGATTCTGCGCCATCATGTTGGGCC
TGTGCATGCAACAGATCCAAAAGCTCGACCAGGCCTGGCACATCCTGAGG
CAACAGTACACGGACAGCGCCTTCACCTTCGAGGCCAAGTTGCGACCCAC
GTTGAGCATCATGAACGAGGCCTCCAATCCACAGGCTCCAAACACAACCG
TTCCCCATGTTCTGCTGTATGCACTACTGATCGATCGACCCGTTATGGAC
ATCATAAACCACTCCAACATTGACGATCGCCCAGCTCTGTACCACACCTG
TATTGCTCCTTGGGAGTCGAAAGCGGATGACTTTGGCATGACCATTAATT
TCCAGCACCTGGATGCATCGCGTGGCTTCCTGAAGAACTTGGAACTGTAT
CGAAAGAATGCCAAGATTATCCTGGAGGATGCTAGTCCTCGGCTCGATGA
GCTTCTAGCTGATGCTTTTCGAACCGAGTTCCATGTCAAGTTCCTATGGG
GCAGTTCCGGAGCAACGGCCAAGGCCGAAGATCGGCACAACAAACTGGAA
AAGGTGCTCACCCTGATGGCCGACAAGTTTTGCATGATGGCCGAGCAGGC
AAGCTTTCTAGACCAT

BO17163.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-RA 2835 CG9098-PA 1..2832 17..2848 13860 99.3 Plus
CG9098-RC 2262 CG9098-PC 1..2259 590..2848 11100 99.4 Plus
CG9098-RB 2262 CG9098-PB 1..2259 590..2848 11100 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-RA 3481 CG9098-RA 101..2934 15..2848 13870 99.3 Plus
CG9098-RC 3470 CG9098-RC 101..2923 15..2848 13670 98.9 Plus
CG9098-RB 2998 CG9098-RB 270..2592 526..2848 11405 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6009240..6010242 1884..882 4865 99 Minus
2L 23513712 2L 6008755..6009189 2314..1880 2175 100 Minus
2L 23513712 2L 6008096..6008505 2721..2312 2035 99.8 Minus
2L 23513712 2L 6010309..6010670 887..526 1735 98.6 Minus
2L 23513712 2L 6011555..6011728 525..352 810 97.7 Minus
2L 23513712 2L 6011783..6011937 353..199 745 98.7 Minus
2L 23513712 2L 6007911..6008038 2848..2721 640 100 Minus
2L 23513712 2L 6011985..6012111 201..75 635 100 Minus
2L 23513712 2L 6012178..6012238 75..15 305 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:19:45 has no hits.

BO17163.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:26 Download gff for BO17163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 1..2835 17..2852 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:07 Download gff for BO17163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 101..2940 15..2855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:05 Download gff for BO17163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 103..2934 17..2850 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:26 Download gff for BO17163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 101..2940 15..2855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:32 Download gff for BO17163.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 103..2934 17..2850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:32 Download gff for BO17163.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6011555..6011726 354..525 97 <- Minus
2L 6011783..6011935 201..353 98 <- Minus
2L 6011986..6012111 75..200 100 <- Minus
2L 6007909..6008037 2722..2850 98 <- Minus
2L 6008096..6008502 2315..2721 99 <- Minus
2L 6008755..6009189 1880..2314 100 <- Minus
2L 6009245..6010240 884..1879 99 <- Minus
2L 6010313..6010670 526..883 98 <- Minus
2L 6012179..6012236 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:05 Download gff for BO17163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6011555..6011726 354..525 97 <- Minus
arm_2L 6011783..6011935 201..353 98 <- Minus
arm_2L 6011986..6012111 75..200 100 <- Minus
arm_2L 6012179..6012236 17..74 100   Minus
arm_2L 6007909..6008037 2722..2850 98 <- Minus
arm_2L 6008096..6008502 2315..2721 99 <- Minus
arm_2L 6008755..6009189 1880..2314 100 <- Minus
arm_2L 6009245..6010240 884..1879 99 <- Minus
arm_2L 6010313..6010670 526..883 98 <- Minus

BO17163.pep Sequence

Translation from 16 to 2866

> BO17163.pep
MGNTQARQLENRQVPNRRSSILWNFRYSNTVRRREDLAVMVHNSRMSISE
WLDLLELQQYEGNLQEFSTVDDVVDITDKELKQFGVRGAHRQRMVNSLLG
VRAKRRQSMNLEAMSSAPRAVPRRKKSCPLVYLGENPQDMAGSGDSGPGV
ITTKSGKVLKQLTFDETSTIYEELRPRSKCNSPHWAIEDSRMEGYGSSNA
TTPLATAQPSPSEQQEAIALKKALEWELSLDARELRSHAWYHGALPRQRA
EEIVQREGDFLVRDCASQPDNYVLSCRSKAAVLHFVLNKLVLQPETVYER
VQYQFEEDAFDTVPDLITFYVGSGKPISSASGALIQFPCNRTYPLSFYGH
KIVGNQLHTQMLAGLRGLSPLNSPMGSNGAVGAGMNATFRFEPQQQQQQQ
LSPMAGSPASPHCSPPRARREVPPPPRLPCKKQQRSQSLTPAQAMLVSNI
NKLQEQQLQMQELENGNGNGIMRFQTIARCNPTSEQHLESKFTTHSLPRP
NTSAAHALRQQAVARISSLARNCSLDSPSDSRPPSPPPKPRKEPMAAVLA
YQASGSDSGNGSGDSALGDACEASVQRGVIIKNPRFMTTSVSNGTLKSFT
EFDVLAAEEELFTMAIEEVKTASKFDFENFVTLLLPSVENKPLDGDALNT
FKMMLLETGPKLLAEHITRIDIALFLEEPSNEEDYYLSCSGLELLTLPHG
KVFREDIIERTQCIKLMVAVTILTCQTDLDRAQLLSKWIQIAVETKTALG
NLFGFCAIMLGLCMQQIQKLDQAWHILRQQYTDSAFTFEAKLRPTLSIMN
EASNPQAPNTTVPHVLLYALLIDRPVMDIINHSNIDDRPALYHTCIAPWE
SKADDFGMTINFQHLDASRGFLKNLELYRKNAKIILEDASPRLDELLADA
FRTEFHVKFLWGSSGATAKAEDRHNKLEKVLTLMADKFCMMAEQASFLDH

BO17163.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-PA 944 CG9098-PA 1..944 1..944 4881 99.9 Plus
CG9098-PC 753 CG9098-PC 1..753 192..944 3901 100 Plus
CG9098-PB 753 CG9098-PB 1..753 192..944 3901 100 Plus