Clone Sequence Records
BO17164.complete Sequence
2590 bp assembled on 2008-11-10
GenBank Submission: KX794357
> BO17164.complete
GAAGTTATCAGTCGACATGGCCGTTAAGCAGAATAACAGCGAGGCGGGTG
ATAATGCCTCGGATAATGCCGGAGGAGCTGGCAACGGCATTCCGCCCAAC
GCCAAACCCATGTCCGCGAACGGAATGGCGAATGCCGAAGAGAACGTATT
GCCAAAGGGCATGGACACGGGTTCGCCCGCTGGCGAGAGCCTGAACTCCA
ACCGATCGGGCAAGCGGGATATTAAGGCCCTGCTGGCATACCTCCAAAGC
ATCGATATGCCGGAGCAAGGCCACAATGTGATGGCCATCTGCGAGAGGGT
TATCGTGGACTTGGCCCGTCTGCAAATTCCACGAGGCGCATCCTGTCCAC
GCCTAAAGGAAGACGTCTGCCAGGTCGGTGCCTTTCTGGCTACGCGCAAC
GAGAAGTTCCACCAAATGTTCTACCTGCGTGTCGTCTACGAGCTGATCAC
CAAGTCGCCATTCGAGCCACCACCCTCGTGTGCCGTGGCCATTGTGTTCC
AGCTGTTCGACTCCACGCAGATCCTGGAGGCTGTACACTCGCTGCTGGAA
CAGAATGTGCAGGACTCGAGCATTAAGAAGACGGTGAACCTGCTCTGTGA
TTGGATCACGTACTGCACCTTTTGCAGCACTCTCAATCTTTGGGTGCTGG
CGCTGCTCAAGGGGCTAAGGGATCAGGGCAAAATGGCGCTGCTCGACGAG
ATTGCAATGGACAACATCGAGAAGCTGTTCCACGTGATGATCTTTCCGGC
GCTGAGGCAAAAGGCCGCACCGGTTGTGTTTCACATGCTGTCAACGATTA
ATCAGACCCCCGAGGTTTTTCACAAGATCTTGCCAAGGATCCCACGAGTC
CTGCAGTATGTGAAGAATCAGTCGACCACCATGGACGAGATTGGCCTGGA
AACCAAGAAATGTCTGCAGCAACTGGTCGACCTAACCAGCGCCCTAATGC
TACGTTTCTATGATCAGGATGAGCTCTATGTCGCAACCAAGAAAGCCCTG
CAGACCTATGAGCCCTCTCCGAATTGCGTGGCTCTGGCAAAGGCAATGCA
TGAGAATGCCCAGCCGTGGGGTCGGCGGAATGCGAGGGTTGGACTCGTTA
ACCTGGGGAATACCTGCTACATGAATAGCGTACTTCAGGCGCTAGCCATG
ACCAGCGATTTTAGCAGGCAAATCCTGCTTATCGAGTGCAATTCAGTGCT
GCTCATGAAAGTGCAGCAGCAGATTGCCCTGATGCATCACTCGCTGCGCT
ACGAACTAACGCCTTCGCGAGTGCTGAACGCCACCCGGCCGCCTAGCTTC
ACGCCCGGCCTACAACAGGACAGCTCCGAGTTCCTAGGATATCTGCTCGA
CCTGCTGCACGAGCACGAGATCAACAGCTCCTCAGTCACTGGTCACAGTG
TTGGTCCTCCGAAGACCGGCAGGGAAGTGGACGACGTGCCCGCACTGCTG
AGCGAGGATATATTGTCGAGCGGCGTTATTCCGTACAACAGCAAGGATCA
CGAGCTCAGCAGTGGAAGCAACAGTGACAATTGTAATCACAAGCCCACAC
CGACACCACCCGCGACTCCCACCAAAGCCACCAACGGCTTAAAGCAGCAG
GGCCAGCAGGTTGATCAGGCGAAGCCACCATCTACCATTGACAAGACGTT
CGCTGGCAAGCTTTCCACCACCTATCGATGTTTAAACTGCGGCTGGGAGA
GCCGGAACGAGGACAGCTTTCGCGAGCTGCAGCTGTCTTTTCCCGATGAT
AAGGAAGACTGTGGAGCCACCAACTACTCGGTGCAGGATCTGATCGAGTA
CTACTGCTCGCCCGAGAAGCTGGACGGTGACAATCAATATTTCTGTCCAC
AATGCAAGAAGCTTTGCGATGCGGAGCGCCACATCGGGGTCACCCAGGCA
CCGAAGAACCTTATTCTCACGCTCAAGCAGTTCAAGTACGATCAGAAGTA
CCACTTCCGCACCAAGCTCATGCATAAGGTGTTCCACGATGAGAGCGTCA
CAGTAAAAATGTCGGCAAAGGACTCGCTGCAGGAGATGTCCACTGTGCAC
TATGATCTGTATGCGGGTGTTGTTCACGCCGGGTACAGCATGGATTCCGG
TCACTACTTTACGTTCGCGGCGGATCAAGCCAAGAATTGGTACAAGTTCA
ACGATAACGTGGTTACCCACTCCAAGCCGGAGGAGATGCACAATCTCACT
TCGCCCAACACGCCCTACATCCTGTTCTACAAGATGTGCGGCCACTCCAA
TGAGTCTAATTCGGTTACGGCCAGCTGCAGTTCGAGTATGGTATCGGGCT
CAAATGACCAGGTGGTCTCGGTGCCACTGTCGCCGCCTCTGAAGCTGGAG
GAGTTGCCACGCCGACTTCGCGACTACGTAAGAAAGGACAACCATGTTTA
CAACGAAGAGTTGAAGATGCAACGCTTTAAGCGTGGCAACAGCGGTCACG
GCAATGCGTTTGTCAGCCGGCACAACTTTGATGGCGATGGTGACGAGGAC
GACAAGGCGCCGCCGCCGCCCGGAGGATGTGGAGGCAATGGACTGGGCAT
GAACATCAACCGCTTCGTCTTCGCAAGCTTTCTAGACCAT
BO17164.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DUBAI-RA | 2559 | CG8830-PA | 1..2556 | 17..2572 | 12780 | 100 | Plus |
| DUBAI-RB | 2559 | CG8830-PB | 1..2556 | 17..2572 | 12780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DUBAI-RA | 3530 | CG8830-RA | 552..3111 | 13..2572 | 12785 | 100 | Plus |
| DUBAI-RB | 4024 | CG8830-RB | 566..3125 | 13..2572 | 12785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12432977..12433816 | 1998..1159 | 4200 | 100 | Minus |
| 2R | 25286936 | 2R | 12434472..12435285 | 826..13 | 4055 | 99.9 | Minus |
| 2R | 25286936 | 2R | 12432346..12432921 | 2572..1997 | 2880 | 100 | Minus |
| 2R | 25286936 | 2R | 12434075..12434408 | 1158..825 | 1670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:01:15 has no hits.
BO17164.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:06 Download gff for
BO17164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-RA | 545..3104 | 13..2572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:28 Download gff for
BO17164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-RB | 570..3125 | 17..2574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:26 Download gff for
BO17164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-RA | 549..3104 | 17..2574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:06 Download gff for
BO17164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DUBAI-RB | 570..3125 | 17..2574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:06 Download gff for
BO17164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12434075..12434406 | 827..1158 | 100 | <- | Minus |
| 2R | 12432343..12432921 | 1997..2574 | 99 | <- | Minus |
| 2R | 12432979..12433816 | 1159..1996 | 100 | <- | Minus |
| 2R | 12434472..12435281 | 17..826 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:28 Download gff for
BO17164.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8319848..8320426 | 1997..2574 | 99 | <- | Minus |
| arm_2R | 8320484..8321321 | 1159..1996 | 100 | <- | Minus |
| arm_2R | 8321580..8321911 | 827..1158 | 100 | <- | Minus |
| arm_2R | 8321977..8322786 | 17..826 | 100 | | Minus |
BO17164.3prime Sequence
741 bp (677 high quality bases) assembled on 2006-10-13
> BO17164.3prime
ATGGTCTAGAAAGCTTGCGAAGACGAAGCGGTTGATGTTCATGCCCAGTC
CATTGCCTCCACATCCTCCGGGCGGCGGCGGCGCCTTGTCGTCCTCGTCA
CCATCGCCATCAAAGTTGTGCCGGCTGACAAACGCATTGCCGTGACCGCT
GTTGCCACGCTTAAAGCGTTGCATCTTCAACTCTTCGTTGTAAACATGGT
TGTCCTTTCTTACGTAGTCGCGAAGTCGGCGTGGCAACTCCTCCAGCTTC
AGAGGCGGCGACAGTGGCACCGAGACCACCTGGTCATTTGAGCCCGATAC
CATACTCGAACTGCAGCTGGCCGTAACCGAATTAGACTCATTGGAGTGGC
CGCACATCTTGTAGAACAGGATGTAGGGCGTGTTGGGCGAAGTGAGATTG
TGCATCTCCTCCGGCTTGGAGTGGGTAACCACGTTATCGTTGAACTTGTA
CCAATTCTTGGCTTGATCCGCCGCGAACGTAAAGTAGTGACCGGAATCCA
TGCTGTACCCGGCGTGAACAACACCCGCATACAGATCATAGTGCACAGTG
GACATCTCCTGCAGCGAGTCCTTTGCCGACATTTTTACTGTGACGCTCTC
ATCGTGGAACACCTTATGCATGAGCTTGGTGCGGAAGTGGTACTTCTGAT
CGTACTTGAACTGCTTGAGCGTGAGAATAANGTTCTTCGGTGCCTGAGTG
ACCCCGATGTGGCGCTCCGCATCGCAAAGCTTCTTGCATTG
BO17164.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8830-PB | 2559 | CG8830-RB | 1834..2556 | 741..19 | 3571 | 99.7 | Minus |
| CG8830-PA | 2559 | CG8830-RA | 1834..2556 | 741..19 | 3571 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DUBAI-RA | 3530 | CG8830-RA | 2389..3111 | 741..19 | 3589 | 99.7 | Minus |
| DUBAI-RB | 4024 | CG8830-RB | 2403..3125 | 741..19 | 3589 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12432346..12432921 | 19..594 | 2880 | 100 | Plus |
| 2R | 25286936 | 2R | 12432977..12433125 | 593..741 | 719 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:02:16 has no hits.
BO17164.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:34 Download gff for
BO17164.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-PA | 1834..2559 | 16..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:56:55 Download gff for
BO17164.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-RB | 2403..3125 | 19..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:21 Download gff for
BO17164.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DUBAI-RB | 2403..3125 | 19..741 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:21 Download gff for
BO17164.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12432346..12432921 | 19..594 | 100 | <- | Plus |
| 2R | 12432979..12433125 | 595..741 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:56:55 Download gff for
BO17164.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8319851..8320426 | 19..594 | 100 | <- | Plus |
| arm_2R | 8320484..8320630 | 595..741 | 98 | | Plus |
BO17164.5prime Sequence
818 bp (655 high quality bases) assembled on 2006-10-13
> BO17164.5prime
GAAGTTATCAGTCGACATGGCCGTTAAGCAGAATAACAGCGAGGCGGGTG
ATAATGCCTCGGATAATGCCGGAGGAGCTGGCAACGGCATTCCGCCCAAC
GCCAAACCCATGTCCGCGAACGGAATGGCGAATGCCGAAGAGAACGTATT
GCCAAAGGGCATGGACACGGGTTCGCCCGCTGGCGAGAGCCTGAACTCCA
ACCGATCGGGCAAGCGGGATATTAAGGCCCTGCTGGCATACCTCCAAAGC
ATCGATATGCCGGAGCAAGGCCACAATGTGATGGCCATCTGCGAGAGGGT
TATCGTGGACTTGGCCCGTCTGCAAATTCCACGAGGCGCATCCTGTCCAC
GCCTAAAGGAAGACGTCTGCCAGGTCGGTGCCTTTCTGGCTACGCGCAAC
GAGAAGTTCCACCAAATGTTCTACCTGCGTGTCGTCTACGAGCTGATCAC
CAAGTCGCCATTCGAGCCACCACCCTCGTGTGCCGTGGCCATTGTGTTCC
AGCTGTTCGACTCCACGCAGATCCTGGAGGCTGTACACTCGCTGCTGGAA
CAGAATGTGCAGGACTCGAGCATTAAGAAGACGGTGAACCTGCTCTGTGA
TTGGATCACGTACTGCACCTTTTGCAGCACTCTCAATCTTTGGGTGCTGG
CGCTGCTCAAGGGGCTAAGGGATCANGGCAAAATGGCGCTGCTCGACGAG
ATTGCAATGGACAACATCGAGAAGCTGTTCCACGTGATGATCTTTCCGGC
GCTGAGGCAAAAGGCCGCAACGGTTGTGTTTCACATGCTGTCAACGAATA
ATCAGACCCCCGAGGTTT
BO17164.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8830-PB | 2559 | CG8830-RB | 1..802 | 17..818 | 3941 | 99.6 | Plus |
| CG8830-PA | 2559 | CG8830-RA | 1..802 | 17..818 | 3941 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DUBAI-RA | 3530 | CG8830-RA | 552..1357 | 13..818 | 3974 | 99.5 | Plus |
| DUBAI-RB | 4024 | CG8830-RB | 566..1371 | 13..818 | 3974 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12434480..12435285 | 818..13 | 3974 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:53:33 has no hits.
BO17164.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:35 Download gff for
BO17164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-PA | 1..802 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:12:20 Download gff for
BO17164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-RB | 566..1371 | 13..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:52:44 Download gff for
BO17164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DUBAI-RB | 566..1371 | 13..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:52:44 Download gff for
BO17164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12434480..12435285 | 13..818 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:12:20 Download gff for
BO17164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8321985..8322790 | 13..818 | 99 | | Minus |
BO17164.pep Sequence
Translation from 16 to 2590
> BO17164.pep
MAVKQNNSEAGDNASDNAGGAGNGIPPNAKPMSANGMANAEENVLPKGMD
TGSPAGESLNSNRSGKRDIKALLAYLQSIDMPEQGHNVMAICERVIVDLA
RLQIPRGASCPRLKEDVCQVGAFLATRNEKFHQMFYLRVVYELITKSPFE
PPPSCAVAIVFQLFDSTQILEAVHSLLEQNVQDSSIKKTVNLLCDWITYC
TFCSTLNLWVLALLKGLRDQGKMALLDEIAMDNIEKLFHVMIFPALRQKA
APVVFHMLSTINQTPEVFHKILPRIPRVLQYVKNQSTTMDEIGLETKKCL
QQLVDLTSALMLRFYDQDELYVATKKALQTYEPSPNCVALAKAMHENAQP
WGRRNARVGLVNLGNTCYMNSVLQALAMTSDFSRQILLIECNSVLLMKVQ
QQIALMHHSLRYELTPSRVLNATRPPSFTPGLQQDSSEFLGYLLDLLHEH
EINSSSVTGHSVGPPKTGREVDDVPALLSEDILSSGVIPYNSKDHELSSG
SNSDNCNHKPTPTPPATPTKATNGLKQQGQQVDQAKPPSTIDKTFAGKLS
TTYRCLNCGWESRNEDSFRELQLSFPDDKEDCGATNYSVQDLIEYYCSPE
KLDGDNQYFCPQCKKLCDAERHIGVTQAPKNLILTLKQFKYDQKYHFRTK
LMHKVFHDESVTVKMSAKDSLQEMSTVHYDLYAGVVHAGYSMDSGHYFTF
AADQAKNWYKFNDNVVTHSKPEEMHNLTSPNTPYILFYKMCGHSNESNSV
TASCSSSMVSGSNDQVVSVPLSPPLKLEELPRRLRDYVRKDNHVYNEELK
MQRFKRGNSGHGNAFVSRHNFDGDGDEDDKAPPPPGGCGGNGLGMNINRF
VFASFLDH
BO17164.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DUBAI-PA | 852 | CG8830-PA | 1..852 | 1..852 | 4506 | 100 | Plus |
| DUBAI-PB | 852 | CG8830-PB | 1..852 | 1..852 | 4506 | 100 | Plus |
| Usp12-46-PB | 424 | CG7023-PB | 25..419 | 359..739 | 332 | 26.7 | Plus |
| CG14619-PB | 337 | CG14619-PB | 7..335 | 353..739 | 247 | 26.2 | Plus |
| CG14619-PH | 565 | CG14619-PH | 241..563 | 359..739 | 246 | 26.3 | Plus |
