Clone Sequence Records
BO17166.complete Sequence
2704 bp assembled on 2010-04-13
GenBank Submission: KX794152
> BO17166.complete
GAAGTTATCAGTCGACATGCCTTCTAGCGATCCCCTGCCGCCCAAGGAGG
GCGCGCTCTTCCGCAAGCTACTTAAATGCTACGAACTGAAGCAGTACAAA
AATGGCCTTAAACTGGCCAAGCAGATCCTGTCCAACCCCAAGTACATGGA
GCACGGCGAGACGCTGGCCATGAAGGGGCTTACTCTGAACGGACTGGGGC
GCCGCGAGGAGGCCTACAAGTATGTGCGTCTGGGTCTGCGAAACGACCTG
CGCTCCCACGTTTGCTGGCACGTCTACGGACTGCTCCAGCGCAGCGACAA
GAAGTACGATGAGGCCATCAAGTGCTACCGCAACGCGCTCAAGTGGGAGA
AGGATAACCTGCAGATCCTGAAGGACCTGTCGCTTCTCCAGATCCAAATG
CGCGACCTCGAGGGCTACAAGGAGACGCGCCACCACCTGTTCACGCTGCG
TCCCTCGCAGCACGCCTCCTGGATCGGTTTCGCCATGAGCTACCATCTGC
TGGGTGACTACGACATGGCCAACAGCATCCTGGAGACGTTCAGCCAGTCG
CAAACGTCGATTGAGGCGCACGATTATCGGCACTCGGAGCTGCTGCTCTA
CCAGAACCAGATACTCATCGAGTCGAATCGTCTGCAGCAGGCCGTGGACC
ACCTGACCAAATACCAGGGCCAGATCGTCGACAAGCTGGCCGTTCGCGAG
ACCATGGGTGATCTGTACATCAAGCTGCAGCAGCAGGAGAAGGCAGTGCC
CATCTTTGAGTCTCTGATCCGCCGCAATCCGGAGAATGTGCTCTACTACG
AGCAGTACATTGCCGCCCGCCAGGTGACCGACTCAAGCGCCGTGGTGTCG
ATCTATCGCGTGTTCCAGGAGCAGTATCCGCGCGCCCTGTGCCCTCGCCG
CCTGCCTTTGAACATCGCCAACGGCGACGAGTTTCGCGTCGTGACCGACG
AGTACCTGCGCCGCGGTCTGCGTAAGGGCATTCCGCCGCTATTTGTCAAC
GTGCGCACTCTGCACCAGATACCGGAGAGGGCGGCCGTTATCGAGGAGCT
GGCGCTGCAGTATTTCGAGAACCTTACCCGTTCCGGCCACTTTTCTCGCG
AAGATGCCGACGCCGGAATTCCCGTCGAGCCGGCCTCGGCGCTGGTGTGG
ACGGCACTGTTTCTGGCGCAGCACTACGACTACATGCGCGATACGGACCG
CGCTCTGGAGTACATCAATGTGGCTATCGACCATACGCCAACACTCATTG
AGCTGCTTATCACCAAGGGTCGCATCTTTAAGCATGCTGGCGATCCCGTG
GAGGCGTACGTCTGGCTGGAGGAGGCCCAAAGCATGGACACGGCAGATCG
CTACATCAATTCGAAGTGCGCGAAGTACATGCTGCGCGCCAACATGGTGC
AGGAGGCAGAGGAGATCTGCGCCAAGTTCACTCGCGAGGGTGTCTCCGCC
ATGGACAACTTGAACGAGATGCAGTGCATGTGGTTCCAGACGGAGTGTGC
CCTGGCCTATCAGCGCATGGGTCGCTGGGGCGAGTCGTTGAAGAAGTGCC
ACGAGGTGGAGCGCCACTTTGCCGAAATCGTCGAGGACCAGTTCGATTTC
CACACCTATTGCATGCGTAAAATGACGCTGCGCGCCTACGTTGGCCTGTT
GCGATTGGAGGACGTGCTACGCCAGCATCCATTCTATTTCAAGGCGGCCA
AGTGCGCCATCGAGGTGTACATTCGTCTGTACGACAAGCCGCTTAAGTCG
GAGACAACCATTGAAGAGATTGACATTGAGAACCTGCCGCCATCAGAACT
GAAGAAGCTGCGCAGCAAACAGCGCAAGGCCAAGAAGAAAGCTGAGCTGG
AGAGTGCGCAGGCCGCACAGGCGCAGGTGAAGCGCGAGCAGCACCAGAAA
TCGAAACAGCAGGCAAACCAGGAGACCGACCCCGATGCTCCGCAGTTGGA
CGAGCTGGTGGCCGAGAAGCTGGAGCGCACGGACGATCCGCTGGACAAGG
CCATTGAATTCTTGAAACCGCTGCAGCAGCTGGCTAAGGAGCGCATCGAG
ACGCATCTGCTGGCCTTCGAGTTGTACTACCGCAAGAACAAACTGCTCCT
TATGCTGCAGTGCATCCGGCGCGCTCGCGCCGTCGACGCCTCGCACCCCG
TAATCCACAGCTGCATTATTCGCTTCGTTAAATCGTTGACCAGCGCCGCC
AAGGAGCAGCCGTTCAATGAGCACGTGCAGCAGGTGCTGGAGAAGGCCAC
CAAAGAACTGATAGGCAGCAAGACGCCCCAGCAGCTCAACGATGAGTTTA
TTGCCAAACACAACGCTTCCATACTGCATTTATACGAGGGCGCCCGCAGT
CTGTACGAACTGGACAATAGTAAAAAAGCTGCCGCCATCAAGCTGGTCAC
TAGCTTCAACCTGGCCAAGCTCCGGCTGGAGGAGGCCACCAAAATCTACA
CAGCGTTGCGGGACGGCGATGTGTTTGGCGAGTGCGAGGCAGAGGCCGCT
TCCTACCAGCAGGCGTGCCACCAACGCTTCCAGTACGCCCGCATCTTTCG
CAATGTCGAGGAGCTGGAGGCTCAACTGCAGGAGAAGGAGGCCGCCAAGC
TGCGCGCCGAGGAAGAGCAGCAGCAGCTGATTCACGTTGATTCTAGTGAA
CCGGTGTCTGTTTTGGCCACGGCAGCGGCAGCGTCTGCAAGCTTTCTAGA
CCAT
BO17166.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nat1-RB | 2673 | CG12202-PB | 1..2670 | 17..2686 | 13335 | 100 | Plus |
| Nat1-RA | 2673 | CG12202-PA | 1..2670 | 17..2686 | 13335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nat1-RB | 4013 | CG12202-RB | 639..3308 | 17..2686 | 13335 | 100 | Plus |
| Nat1-RA | 3738 | CG12202-RA | 364..3033 | 17..2686 | 13335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19481598..19482385 | 563..1350 | 3940 | 100 | Plus |
| X | 23542271 | X | 19482951..19483605 | 1778..2432 | 3260 | 99.8 | Plus |
| X | 23542271 | X | 19481018..19481507 | 74..563 | 2450 | 100 | Plus |
| X | 23542271 | X | 19482451..19482879 | 1350..1778 | 2145 | 100 | Plus |
| X | 23542271 | X | 19483682..19483938 | 2430..2686 | 1285 | 100 | Plus |
| X | 23542271 | X | 19480622..19480678 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:27:08 has no hits.
BO17166.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:36 Download gff for
BO17166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 470..3139 | 17..2688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:12 Download gff for
BO17166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 364..3033 | 17..2688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:45 Download gff for
BO17166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 364..3033 | 17..2688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:45 Download gff for
BO17166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19480622..19480678 | 17..73 | 100 | -> | Plus |
| X | 19481018..19481506 | 74..562 | 100 | -> | Plus |
| X | 19481598..19482385 | 563..1350 | 100 | -> | Plus |
| X | 19482452..19482879 | 1351..1778 | 100 | -> | Plus |
| X | 19482952..19483604 | 1779..2431 | 99 | -> | Plus |
| X | 19483684..19483938 | 2432..2688 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:12 Download gff for
BO17166.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19374655..19374711 | 17..73 | 100 | -> | Plus |
| arm_X | 19375051..19375539 | 74..562 | 100 | -> | Plus |
| arm_X | 19375631..19376418 | 563..1350 | 100 | -> | Plus |
| arm_X | 19376485..19376912 | 1351..1778 | 100 | -> | Plus |
| arm_X | 19376985..19377637 | 1779..2431 | 99 | -> | Plus |
| arm_X | 19377717..19377971 | 2432..2688 | 99 | | Plus |
BO17166.3prime Sequence
699 bp (602 high quality bases) assembled on 2006-10-13
> BO17166.3prime
ATGGTCTAGAAAGCTTGCAGACGCTGCCGCTGCCGTGGCCAAAACAGACA
CCGGTTCACTAGAATCAACGTGAATCAGCTGCTGCTGCTCTTCCTCGGCG
CGCAGCTTGGCGGCCTCCTTCTCCTGCAGTTGAGCCTCCAGCTCCTCGAC
ATTGCGAAAGATGCGGGCGTACTGGAAGCGTTGGTGGCACGCCTGCTGGT
AGGAAGCGGCCTCTGCCTCGCACTCGCCAAACACATCGCCGTCCCGCAAC
GCTGTGTAGATTTTGGTGGCCTCCTCCAGCCGGAGCTTGGCCAGGTTGAA
GCTAGTGACCAGCTTGATGGCGGCAGCTTTTTTACTATTGTCCAGTTCGT
ACAGACTGCGGGCGCCCTCGTATAAATGCAGTATGGAAGCGTTGTGTTTG
GCAATAAACTCATCGTTGAGCTGCTGGGGCGTCTTGCTGCCTATCAGTTC
TTTGGTGGCCTTCTCCAGCACCTGCTGCACGTGCTCATTGAACGGCTGCT
CCTTGGCGGCGCTGGTCAACGATTTAACGAAGCGAATAATGCAGCTGTGG
ATTACGGGGTGCGAGGCGTCGACGGCGCGAGCGCGCCGGATGCACTGCAG
CATAAGGAGCAGTTTGTTCTTGCGGTAGTACAACTCGAAAGCCAGCAGAT
GCGTCTCGATGCGCTCCTTAGCCAGCTGCTGCAGCGGTTTCAAGAATTC
BO17166.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12202-PA | 2673 | Nat1-RA | 1990..2670 | 699..19 | 3355 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nat1-RB | 4013 | CG12202-RB | 2628..3308 | 699..19 | 3375 | 99.7 | Minus |
| Nat1-RA | 3738 | CG12202-RA | 2353..3033 | 699..19 | 3375 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19483179..19483605 | 699..273 | 2105 | 99.5 | Minus |
| X | 23542271 | X | 19483682..19483938 | 275..19 | 1285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:57:00 has no hits.
BO17166.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:36 Download gff for
BO17166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12202-PA | 1990..2673 | 18..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:29:41 Download gff for
BO17166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 2353..3033 | 19..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:42 Download gff for
BO17166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 2353..3033 | 19..699 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:42 Download gff for
BO17166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19483179..19483604 | 274..699 | 99 | -> | Minus |
| X | 19483684..19483938 | 19..273 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:29:41 Download gff for
BO17166.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19377212..19377637 | 274..699 | 99 | -> | Minus |
| arm_X | 19377717..19377971 | 19..273 | 100 | | Minus |
BO17166.5prime Sequence
659 bp (549 high quality bases) assembled on 2006-10-13
> BO17166.5prime
GAAGTTATCAGTCGACATGCCTTCTAGCGATCCCCTGCCGCCCAAGGAGG
GCGCGCTCTTCCGCAAGCTACTTAAATGCTACGAACTGAAGCAGTACAAA
AATGGCCTTAAACTGGCCAAGCAGATCCTGTCCAACCCCAAGTACATGGA
GCACGGCGAGACGCTGGCCATGAAGGGGCTTACTCTGAACGGACTGGGGC
GCCGCGAGGAGGCCTACAAGTATGTGCGTCTGGGTCTGCGAAACGACCTG
CGCTCCCACGTTTGCTGGCACGTCTACGGACTGCTCCAGCGCAGCGACAA
GAAGTACGATGAGGCCATCAAGTGCTACCGCAACGCGCTCAAGTGGGAGA
AGGATAACCTGCAGATCCTGAAGGACCTGTCGCTTCTCCAGATCCAAATG
CGCGACCTCGAGGGCTACAAGGAGACGCGCCACCACCTGTTCACGCTGCG
TCCCTCGCAGCACGCCTCCTGGATCGGTTTCGCCATGAGCTACCATCTGC
TGGGTGACTACGACATGGCCAACAGCATCCTGGAGACGTTCAGCCAGTCG
CAAACGTCGATTGAGGCGCACGATTATCGGCACTCGGAGCTGCTGCTCTA
CCAGAACCAGATACTCATCGAGTCGAATCGTCTGCAGCAGGCCGTGGACC
ACCTGACCA
BO17166.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:13:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12202-PA | 2673 | Nat1-RA | 1..643 | 17..659 | 3215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nat1-RB | 4013 | CG12202-RB | 639..1281 | 17..659 | 3215 | 100 | Plus |
| Nat1-RA | 3738 | CG12202-RA | 364..1006 | 17..659 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19481018..19481507 | 74..563 | 2450 | 100 | Plus |
| X | 23542271 | X | 19481598..19481694 | 563..659 | 485 | 100 | Plus |
| X | 23542271 | X | 19480622..19480678 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:38:23 has no hits.
BO17166.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:37 Download gff for
BO17166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12202-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:08:03 Download gff for
BO17166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 361..1005 | 14..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:17:57 Download gff for
BO17166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nat1-RA | 361..1005 | 14..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:17:57 Download gff for
BO17166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19480619..19480678 | 14..73 | 98 | -> | Plus |
| X | 19481018..19481506 | 74..562 | 100 | -> | Plus |
| X | 19481598..19481693 | 563..658 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:08:03 Download gff for
BO17166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19374652..19374711 | 14..73 | 98 | -> | Plus |
| arm_X | 19375051..19375539 | 74..562 | 100 | -> | Plus |
| arm_X | 19375631..19375726 | 563..658 | 100 | | Plus |
BO17166.pep Sequence
Translation from 16 to 2704
> BO17166.pep
MPSSDPLPPKEGALFRKLLKCYELKQYKNGLKLAKQILSNPKYMEHGETL
AMKGLTLNGLGRREEAYKYVRLGLRNDLRSHVCWHVYGLLQRSDKKYDEA
IKCYRNALKWEKDNLQILKDLSLLQIQMRDLEGYKETRHHLFTLRPSQHA
SWIGFAMSYHLLGDYDMANSILETFSQSQTSIEAHDYRHSELLLYQNQIL
IESNRLQQAVDHLTKYQGQIVDKLAVRETMGDLYIKLQQQEKAVPIFESL
IRRNPENVLYYEQYIAARQVTDSSAVVSIYRVFQEQYPRALCPRRLPLNI
ANGDEFRVVTDEYLRRGLRKGIPPLFVNVRTLHQIPERAAVIEELALQYF
ENLTRSGHFSREDADAGIPVEPASALVWTALFLAQHYDYMRDTDRALEYI
NVAIDHTPTLIELLITKGRIFKHAGDPVEAYVWLEEAQSMDTADRYINSK
CAKYMLRANMVQEAEEICAKFTREGVSAMDNLNEMQCMWFQTECALAYQR
MGRWGESLKKCHEVERHFAEIVEDQFDFHTYCMRKMTLRAYVGLLRLEDV
LRQHPFYFKAAKCAIEVYIRLYDKPLKSETTIEEIDIENLPPSELKKLRS
KQRKAKKKAELESAQAAQAQVKREQHQKSKQQANQETDPDAPQLDELVAE
KLERTDDPLDKAIEFLKPLQQLAKERIETHLLAFELYYRKNKLLLMLQCI
RRARAVDASHPVIHSCIIRFVKSLTSAAKEQPFNEHVQQVLEKATKELIG
SKTPQQLNDEFIAKHNASILHLYEGARSLYELDNSKKAAAIKLVTSFNLA
KLRLEEATKIYTALRDGDVFGECEAEAASYQQACHQRFQYARIFRNVEEL
EAQLQEKEAAKLRAEEEQQQLIHVDSSEPVSVLATAAAASASFLDH
BO17166.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nat1-PB | 890 | CG12202-PB | 1..890 | 1..890 | 4582 | 100 | Plus |
| Nat1-PA | 890 | CG12202-PA | 1..890 | 1..890 | 4582 | 100 | Plus |
