Clone Sequence Records
BO17167.3prime Sequence
832 bp (719 high quality bases) assembled on 2006-10-13
> BO17167.3prime
ATGGTCTAGAAAGCTTGCGGTCGAAATCGCGTCGTTGAGCAGCGCATTCA
GCTCACGGATGTGCTGGGCCTTGGATCCGGTGGCGGTGGAGGCTCCGCAG
GCGCGTCCGACGTAGCTGACGTCGCGGCTGTGGTTCAAGGCGGTGAGGAA
ACGAGGTTGCACATAGGTCCAGCTGCCCTGGTTCTTGTGCTCCTCTTGGG
CCCACACGAGTTCGGCATTCTTGTACAGGTTGGCCTGCTCCTTGACCAGA
TCGAAGGGGAAGGGAGAGATCTGCTCCACGCGCACAATGGCGATTTCGCC
CTCCAGCTGCTTTTCCCTACGTGTCTTGGTCAAATCGTAGTAGACGCGGC
CCGAGCAGAAGACGACCTTCTTCACATTGCTGGGATTCTGGCCGGCGGGA
CCGTTGTCGGGGATGATGCGCTGGAACTCGCTGCCCTCGCTCATCTCGCT
GAAAGGACTCTTAGCCTCGGGGTGACGCAGCAGCGATTTGGGCGTGCACA
GAATCAGGGGCTTGCGGAAAGGCAATGCGATCTGTCGGCGCAGGATGTGG
TAGTAGTTGGCGGGCGTCGAGCAGTTTGCCACGATCCAGTTAATGTCGTG
CAGCTGTCGCACTCCGAACTCATCGGACTCTGGTGGGAAGTAGTCGGGAT
CGTCACTGCTCATTTGCAGGAAGCGCTCCACGCGGCACGAGGAGTGCTCG
GGGCCCATGCCTTCCATGCCGTGGGGCAGGAGCATTACCAGACCCGATTG
GCGCACCCACTTTGACTGACCGCTGGAGATGAACTGATCGATGATCGACT
GGGCCGTGTTGCTGAAGTCTCCGAACTGAGCC
BO17167.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11661-PG | 3027 | Nc73EF-RG | 2211..3024 | 832..19 | 4070 | 100 | Minus |
| CG11661-PH | 3027 | Nc73EF-RH | 2211..3024 | 832..19 | 4070 | 100 | Minus |
| CG11661-PC | 3027 | Nc73EF-RC | 2211..3024 | 832..19 | 4070 | 100 | Minus |
| CG11661-PB | 3027 | Nc73EF-RB | 2211..3024 | 832..19 | 4070 | 100 | Minus |
| CG11661-PE | 2337 | Nc73EF-RE | 1521..2334 | 832..19 | 4070 | 100 | Minus |
| CG11661-PA | 3027 | Nc73EF-RA | 2211..3024 | 832..19 | 4070 | 100 | Minus |
| CG11661-PF | 3054 | Nc73EF-RF | 2238..3051 | 832..19 | 4070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3718 | CG11661-RF | 2303..3116 | 832..19 | 4070 | 100 | Minus |
| Nc73EF-RA | 4381 | CG11661-RA | 2322..3135 | 832..19 | 4070 | 100 | Minus |
| Nc73EF-RB | 3698 | CG11661-RB | 2283..3096 | 832..19 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16964203..16964764 | 832..271 | 2810 | 100 | Minus |
| 3L | 28110227 | 3L | 16964821..16964978 | 273..116 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 16967379..16967478 | 118..19 | 500 | 100 | Minus |
| 3L | 28110227 | 3L | 1607507..1607692 | 828..643 | 360 | 79.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:10:45 has no hits.
BO17167.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:38 Download gff for
BO17167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11661-PF | 2238..3054 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:01:10 Download gff for
BO17167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RB | 2283..3100 | 14..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:36 Download gff for
BO17167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RB | 2283..3100 | 14..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:36 Download gff for
BO17167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16964203..16964764 | 271..832 | 100 | -> | Minus |
| 3L | 16964824..16964978 | 116..270 | 100 | -> | Minus |
| 3L | 16967382..16967482 | 14..115 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:01:10 Download gff for
BO17167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16957303..16957864 | 271..832 | 100 | -> | Minus |
| arm_3L | 16957924..16958078 | 116..270 | 100 | -> | Minus |
| arm_3L | 16960482..16960582 | 14..115 | 98 | | Minus |
BO17167.5prime Sequence
894 bp (718 high quality bases) assembled on 2006-10-13
> BO17167.5prime
GAAGTTATCAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCT
TGTCGCCGATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGC
AGCAGTCAGCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTA
CAACTCCGCAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACG
TGGAGGAGATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACC
TCCTGGGACGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTT
GGCGCCCGTGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAG
GAGCCGTCGCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTG
GCCGTCCAGGCCATCATCAGGAGCTACCAGATTCGAGGACATAATATTGC
TCACCTCGATCCACTTGAAATTAATACACCAGAATTGCCTGGCAACTCCT
CGACGAAATCCATTTACGCTAATTTCAGTTTTGGCGAGCAGGACATGGAT
CGCCAGTTCAAGCTGCCCAGCACTACCTTCATCGGAGGCGATGAGGCTTC
GTTGCCCCTAAAGGAAATCCTGAACCGCCTGGAGAATGTCTACTGTAATA
AGATTGGCGTGGAGTTCATGTTCATCAACTCTCTGGAGCAATGCAACTGG
ATCCGCAAGCGTTTTGAGACCCCCGGCGTCCTTAACTTCTCGCCCGAGGA
GAAGCGTCTGATCCTGGCCCGTTTGACCCGTGGCACCGGCTTTGAGGCTT
TCCTGGGCAAGAAGTACTCTTCTGAGAAACGTTTCGGTCTGGAGGGTTGC
GAGATCATGATCCCAGCCCTGAAGGAGATCATCGACGTATCAAC
BO17167.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11661-PG | 3027 | Nc73EF-RG | 1..878 | 17..894 | 4340 | 99.7 | Plus |
| CG11661-PH | 3027 | Nc73EF-RH | 1..878 | 17..894 | 4340 | 99.7 | Plus |
| CG11661-PC | 3027 | Nc73EF-RC | 1..878 | 17..894 | 4340 | 99.7 | Plus |
| CG11661-PB | 3027 | Nc73EF-RB | 1..878 | 17..894 | 4340 | 99.7 | Plus |
| CG11661-PA | 3027 | Nc73EF-RA | 1..878 | 17..894 | 4340 | 99.7 | Plus |
| CG11661-PF | 3054 | Nc73EF-RF | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PF | 3054 | Nc73EF-RF | 541..905 | 530..894 | 1775 | 99.4 | Plus |
| CG11661-PE | 2337 | Nc73EF-RE | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RJ | 4376 | CG11661-RJ | 460..1337 | 17..894 | 4360 | 99.8 | Plus |
| Nc73EF-RI | 4028 | CG11661-RI | 112..989 | 17..894 | 4360 | 99.8 | Plus |
| Nc73EF-RA | 4381 | CG11661-RA | 112..989 | 17..894 | 4360 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16962476..16962757 | 613..894 | 1380 | 99.3 | Plus |
| 3L | 28110227 | 3L | 16959705..16959884 | 251..430 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 16959281..16959422 | 109..250 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 16961498..16961603 | 429..534 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 16959121..16959216 | 17..112 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 16962334..16962414 | 533..613 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:32:54 has no hits.
BO17167.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:39 Download gff for
BO17167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11661-PH | 1..878 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:00:58 Download gff for
BO17167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RA | 109..986 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:54:15 Download gff for
BO17167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RA | 112..989 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:54:15 Download gff for
BO17167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16959705..16959884 | 251..430 | 100 | -> | Plus |
| 3L | 16961500..16961602 | 431..533 | 100 | -> | Plus |
| 3L | 16962335..16962413 | 534..612 | 100 | -> | Plus |
| 3L | 16962476..16962757 | 613..894 | 99 | | Plus |
| 3L | 16959121..16959216 | 17..112 | 100 | -> | Plus |
| 3L | 16959285..16959422 | 113..250 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:00:58 Download gff for
BO17167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16952221..16952316 | 17..112 | 100 | -> | Plus |
| arm_3L | 16952385..16952522 | 113..250 | 100 | -> | Plus |
| arm_3L | 16952805..16952984 | 251..430 | 100 | -> | Plus |
| arm_3L | 16954600..16954702 | 431..533 | 100 | -> | Plus |
| arm_3L | 16955435..16955513 | 534..612 | 100 | -> | Plus |
| arm_3L | 16955576..16955857 | 613..894 | 99 | | Plus |
BO17167.complete Sequence
3058 bp assembled on 2006-12-18
GenBank Submission: FJ634050
> BO17167.complete
GAAGTTATCAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCT
TGTCGCCGATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGC
AGCAGTCAGCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTA
CAACTCCGCAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACG
TGGAGGAGATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACC
TCCTGGGACGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTT
GGCGCCCGTGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAG
GAGCCGTCGCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTG
GCCGTCCAGGCCATCATCAGGAGCTACCAGATTCGAGGACATAATATTGC
TCACCTCGATCCACTTGAAATTAATACACCAGAATTGCCTGGCAACTCCT
CGACGAAATCCATTTACGCTAATTTCAGTTTTGGCGAGCAGGACATGGAT
CGCCAGTTCAAGCTGCCCAGCACTACCTTCATCGGAGGCGATGAGGCTTC
GTTGCCCCTAAAGGAAATCCTGAACCGCCTGGAGAATGTCTACTGTAATA
AGATTGGCGTGGAGTTCATGTTCATCAACTCTCTGGAGCAATGCAACTGG
ATCCGCAAGCGTTTTGAGACCCCCGGCGTCCTTAACTTCTCGCCCGAGGA
GAAGCGTCTGATCCTGGCCCGTTTGACCCGTGCCACCGGCTTTGAGGCTT
TCCTGGCCAAGAAGTACTCTTCTGAGAAACGTTTCGGTCTGGAGGGTTGC
GAGATCATGATCCCAGCCCTGAAGGAGATCATCGACGTATCAACGGAGTT
GGGAGTGGAGTCGGTCATCATGGGCATGCCCCATCGTGGACGTCTTAACA
CCTTGGCCAATGTATGCCGCAAGCCCTTGAACCAGATCTTCACCCAGTTC
GCTGGACTGGAGGCTGCTGATGATGGCTCTGGTGATGTCAAGTACCATCT
CGGTACATACATCGAGCGATTGAACCGCGTTACAAACAAGAACATCCGCC
TGGCTGTCGTGGCCAACCCGTCCCATCTGGAGGCTGTGGATCCCGTGGTG
CAGGGCAAGACCCGTGCCGAGCAGTTCTACCGTGGCGACCAGGAGGGCAA
GAAGGTTATGTCCATTTTGATCCACGGTGATGCCGCCTTCTGCGGACAGG
GCGTCGTCTATGAAACTATGCATCTTTCGGACCTGCCCGACTACACCACC
CACGGAACTATCCATGTGGTGGCCAACAACCAGATCGGTTTCACCACCGA
TCCCCGTTTCTCGAGGTCCTCTCCCTACTGTACGGATGTGGCTCGTGTCG
TCAATGCTCCTATTTTCCACGTCAACGCTGACGATCCAGAGGCCGTGATG
CATGTGTGCAAGGTGGCTGCTGAGTGGCGTGCTACTTTCCACAAGGATTG
TGTTATTGATTTGGTCGGATACCGCCGCAATGGACACAACGAGATCGACG
AGCCCATGTTCACGCAACCCTTGATGTACCAGAAGATCCGCAAGCACAAG
AACTGTCTCGACCTGTATGCCGACAAACTGATCGCCGAGGGCACTGTCAC
CGCCGAGGAGGTTAAGTCGGTTGCCGCTAAATACGAGAACATTTGCGAGG
AGGCATTCGCTCTGGCCAAGACCGAGACCCACGTCAAGTACAAGGACTGG
CTCGACTCGCCCTGGTCCGGCTTTTTCGAGGGCAAAGACCCATTGAAGGT
AGCGCCCACTGGAGTGAAGGAGGAGACCCTCATCCACATCGGCAACCGCT
TCTCGTCGCCACCACCGAACGCTGCTGAATTCGTGATTCACAAGGGTCTA
TTGCGAGTGTTGGCCGCTCGCAAGGCAATGGTGGACGAAAAGGTCGCTGA
TTGGGCTTTGGGAGAGGCCATGGCCTTCGGCTCTCTGCTGAAGGAGGGAA
TCCATGTGCGCCTTTCGGGACAGGATGTCGAGCGTGGTACCTTCTCGCAT
CGCCACCATGTGCTGCACCACCAGCTGGTCGACAAGGCCACTTACAACTC
GCTGCAGCACATGTACCCAGATCAGGCGCCCTACTCCGTCTCCAACAGCT
CGCTGTCGGAGTACGCAGTGCTTGGTTTCGAGCACGGTTACTCGATGACC
AATCCCAATGCCCTGGTGCTGTGGGAGGCTCAGTTCGGAGACTTCAGCAA
CACGGCCCAGTCGATCATCGATCAGTTCATCTCCAGCGGTCAGTCAAAGT
GGGTGCGCCAATCGGGTCTGGTAATGCTCCTGCCCCACGGCATGGAAGGC
ATGGGCCCCGAGCACTCCTCGTGCCGCGTGGAGCGCTTCCTGCAAATGAG
CAGTGACGATCCCGACTACTTCCCACCAGAGTCCGATGAGTTCGGAGTGC
GACAGCTGCACGACATTAACTGGATCGTGGCAAACTGCTCGACGCCCGCC
AACTACTACCACATCCTGCGCCGACAGATCGCATTGCCTTTCCGCAAGCC
CCTGATTCTGTGCACGCCCAAATCGCTGCTGCGTCACCCCGAGGCTAAGA
GTCCTTTCAGCGAGATGAGCGAGGGCAGCGAGTTCCAGCGCATCATCCCC
GACAACGGTCCCGCCGGCCAGAATCCCAGCAATGTGAAGAAGGTCGTCTT
CTGCTCGGGCCGCGTCTACTACGATTTGACCAAGACACGTAGGGAAAAGC
AGCTGGAGGGCGAAATCGCCATTGTGCGCGTGGAGCAGATCTCTCCCTTC
CCCTTCGATCTGGTCAAGGAGCAGGCCAACCTGTACAAGAATGCCGAACT
CGTGTGGGCCCAAGAGGAGCACAAGAACCAGGGCAGCTGGACCTATGTGC
AACCTCGTTTCCTCACCGCCTTGAACCACAGCCGCGACGTCAGCTACGTC
GGACGCGCCTGCGGAGCCTCCACCGCCACCGGATCCAAGGCCCAGCACAT
CCGTGAGCTGAATGCGCTGCTCAACGACGCGATTTCGACCGCAAGCTTTC
TAGACCAT
BO17167.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RA | 3027 | CG11661-PA | 1..3024 | 17..3040 | 15120 | 100 | Plus |
| Nc73EF-RB | 3027 | CG11661-PB | 1..3024 | 17..3040 | 15120 | 100 | Plus |
| Nc73EF-RC | 3027 | CG11661-PC | 1..3024 | 17..3040 | 15120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RA | 4381 | CG11661-RA | 112..3135 | 17..3040 | 15120 | 100 | Plus |
| Nc73EF-RB | 3698 | CG11661-RB | 73..3096 | 17..3040 | 15120 | 100 | Plus |
| Nc73EF-RC | 4384 | CG11661-RC | 115..3138 | 17..3040 | 15120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16963870..16964764 | 1894..2788 | 4475 | 100 | Plus |
| 3L | 28110227 | 3L | 16962943..16963812 | 1025..1894 | 4350 | 100 | Plus |
| 3L | 28110227 | 3L | 16962476..16962888 | 613..1025 | 2065 | 100 | Plus |
| 3L | 28110227 | 3L | 1607204..1607692 | 1928..2416 | 915 | 79.1 | Plus |
| 3L | 28110227 | 3L | 16959705..16959884 | 251..430 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 16964821..16964978 | 2786..2943 | 790 | 100 | Plus |
| 3L | 28110227 | 3L | 16959281..16959422 | 109..250 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 16961498..16961603 | 429..534 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 16967379..16967478 | 2941..3040 | 500 | 100 | Plus |
| 3L | 28110227 | 3L | 16959121..16959216 | 17..112 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 16962334..16962414 | 533..613 | 405 | 100 | Plus |
| 3L | 28110227 | 3L | 1606366..1606605 | 1204..1443 | 390 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:25:25 has no hits.
BO17167.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:27 Download gff for
BO17167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RC | 1..3027 | 17..3044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:38 Download gff for
BO17167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RC | 110..3133 | 17..3042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:23 Download gff for
BO17167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RC | 110..3133 | 17..3042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:27 Download gff for
BO17167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RC | 110..3137 | 17..3045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:20 Download gff for
BO17167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RC | 115..3138 | 17..3042 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:20 Download gff for
BO17167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16962476..16962887 | 613..1024 | 100 | -> | Plus |
| 3L | 16962943..16963811 | 1025..1893 | 100 | -> | Plus |
| 3L | 16959121..16959216 | 17..112 | 100 | -> | Plus |
| 3L | 16959285..16959422 | 113..250 | 100 | -> | Plus |
| 3L | 16959705..16959884 | 251..430 | 100 | -> | Plus |
| 3L | 16961500..16961602 | 431..533 | 100 | -> | Plus |
| 3L | 16962335..16962413 | 534..612 | 100 | -> | Plus |
| 3L | 16963870..16964764 | 1894..2788 | 100 | -> | Plus |
| 3L | 16964824..16964978 | 2789..2943 | 100 | -> | Plus |
| 3L | 16967382..16967478 | 2944..3042 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:23 Download gff for
BO17167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16952221..16952316 | 17..112 | 100 | -> | Plus |
| arm_3L | 16952385..16952522 | 113..250 | 100 | -> | Plus |
| arm_3L | 16960482..16960578 | 2944..3042 | 97 | | Plus |
| arm_3L | 16952805..16952984 | 251..430 | 100 | -> | Plus |
| arm_3L | 16954600..16954702 | 431..533 | 100 | -> | Plus |
| arm_3L | 16955435..16955513 | 534..612 | 100 | -> | Plus |
| arm_3L | 16955576..16955987 | 613..1024 | 100 | -> | Plus |
| arm_3L | 16956043..16956911 | 1025..1893 | 100 | -> | Plus |
| arm_3L | 16956970..16957864 | 1894..2788 | 100 | -> | Plus |
| arm_3L | 16957924..16958078 | 2789..2943 | 100 | -> | Plus |
BO17167.pep Sequence
Translation from 16 to 3058
> BO17167.pep
MHRAHTAFSLALSPMAHKNFATWLLKSSSSQQMAKVTAAAAVRTYNSAAA
EPFANGSTASYVEEMYNAWLRDPTSVHTSWDAYFRSNSYVSPPNLAPVQA
NTLPLTAFNFGGAVAGAAPDSKTIDDHLAVQAIIRSYQIRGHNIAHLDPL
EINTPELPGNSSTKSIYANFSFGEQDMDRQFKLPSTTFIGGDEASLPLKE
ILNRLENVYCNKIGVEFMFINSLEQCNWIRKRFETPGVLNFSPEEKRLIL
ARLTRATGFEAFLAKKYSSEKRFGLEGCEIMIPALKEIIDVSTELGVESV
IMGMPHRGRLNTLANVCRKPLNQIFTQFAGLEAADDGSGDVKYHLGTYIE
RLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGDQEGKKVMSI
LIHGDAAFCGQGVVYETMHLSDLPDYTTHGTIHVVANNQIGFTTDPRFSR
SSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRATFHKDCVIDLV
GYRRNGHNEIDEPMFTQPLMYQKIRKHKNCLDLYADKLIAEGTVTAEEVK
SVAAKYENICEEAFALAKTETHVKYKDWLDSPWSGFFEGKDPLKVAPTGV
KEETLIHIGNRFSSPPPNAAEFVIHKGLLRVLAARKAMVDEKVADWALGE
AMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQLVDKATYNSLQHMY
PDQAPYSVSNSSLSEYAVLGFEHGYSMTNPNALVLWEAQFGDFSNTAQSI
IDQFISSGQSKWVRQSGLVMLLPHGMEGMGPEHSSCRVERFLQMSSDDPD
YFPPESDEFGVRQLHDINWIVANCSTPANYYHILRRQIALPFRKPLILCT
PKSLLRHPEAKSPFSEMSEGSEFQRIIPDNGPAGQNPSNVKKVVFCSGRV
YYDLTKTRREKQLEGEIAIVRVEQISPFPFDLVKEQANLYKNAELVWAQE
EHKNQGSWTYVQPRFLTALNHSRDVSYVGRACGASTATGSKAQHIRELNA
LLNDAISTASFLDH
BO17167.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-PA | 1008 | CG11661-PA | 1..1008 | 1..1008 | 5302 | 100 | Plus |
| Nc73EF-PB | 1008 | CG11661-PB | 1..1008 | 1..1008 | 5302 | 100 | Plus |
| Nc73EF-PC | 1008 | CG11661-PC | 1..1008 | 1..1008 | 5302 | 100 | Plus |
| Nc73EF-PG | 1008 | CG11661-PG | 1..1008 | 1..1008 | 5302 | 100 | Plus |
| Nc73EF-PF | 1017 | CG11661-PF | 1..1017 | 1..1008 | 5153 | 97.1 | Plus |
