Clone Sequence Records
BO17173.3prime Sequence
678 bp (636 high quality bases) assembled on 2006-10-13
> BO17173.3prime
ATGGTCTAGAAAGCTTGCCCTGGGGTCGTTGCTCATCTCAGAATGGTGCA
GTTCACTCTCGTCTCCGAAACTGTGGGCCGCAGCACTGGGCGTTATGCTG
GGCGTTCGGGCCCGAATGCGAATGGCCGACATGTCAGATCCCCGGCGGGA
GCTCTTCAAGGAGACGGACTGGCGGGAGCAGAAGCACCTGCAGATAATCC
GCTTGAAGGCGAAGCGAAAGTCCTTTGAGAACAGGGCGTAGATCATGGGG
TTTACGGCGGAGTTGCAGTAGCCAAGCCAAAAGAGCACCGAAAAGAGCAG
CGGGTCGACGCAGTCCTGGCAGAACGGCCGGATGATGTACATGGTGAAGA
AGGGACACCAGCAGAAGATGAACATGCCCACGATGATGGCCAGTGTTTTG
GCCGCCTTGGTCTCCATGCGGAACCGCTTCACCTGCGCCTTGATGTTGCG
CCTGCCCATCTTCTTGTTGGCCGGACGCGAGTGTCCCGATCCTCCAGCCT
CGCTGGTGTTGCTCTGCCGCCTGGCCAACTCCGGTAGACCCTTACCCACC
TGCAGGTAGCATGAGCTGGCTACGCCGTGCTGCTGCTGCTGTCGGTAGAG
CTGCGATTCCGTGGACTCCCGACCATTGGTGCCGTTGTAATGGACGGCGA
ACAGTGCGTTTCCCGATTGACGCCGCTC
BO17173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3856-PA | 1938 | Oamb-RA | 1276..1935 | 678..19 | 3300 | 100 | Minus |
| CG3856-PC | 1938 | Oamb-RC | 1276..1935 | 678..19 | 3300 | 100 | Minus |
| CG3856-PB | 1914 | Oamb-RB | 1528..1587 | 435..376 | 175 | 91.6 | Minus |
| CG3856-PB | 1914 | Oamb-RB | 1667..1703 | 296..260 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oamb-RF | 4098 | CG3856-RF | 2272..2931 | 678..19 | 3300 | 100 | Minus |
| Oamb-RG | 4098 | CG3856-RG | 2272..2931 | 678..19 | 3300 | 100 | Minus |
| Oamb-RD | 4098 | CG3856-RD | 2272..2931 | 678..19 | 3300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20690185..20690844 | 19..678 | 3300 | 100 | Plus |
| 3R | 32079331 | 3R | 20693070..20693333 | 172..435 | 585 | 81.4 | Plus |
Blast to na_te.dros performed on 2015-02-05 01:20:19 has no hits.
BO17173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:41 Download gff for
BO17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3856-PC | 1276..1938 | 16..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:02:09 Download gff for
BO17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RC | 1810..2469 | 19..678 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:24 Download gff for
BO17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RD | 2272..2931 | 19..678 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:24 Download gff for
BO17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20690185..20690844 | 19..678 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:02:09 Download gff for
BO17173.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16515907..16516566 | 19..678 | 100 | | Plus |
BO17173.5prime Sequence
734 bp (603 high quality bases) assembled on 2006-10-13
> BO17173.5prime
GAAGTTATCAGTCGACATGAATGAAACAGAGTGCGAGGATCTCATCAAAT
CTGTGAAATGGACGGAACCAGCCAATCTGATCTCCCTGGCCGTACTCGAG
TTCATCAACGTTCTGGTCATCGGTGGCAACTGCCTCGTGATTGCCGCCGT
CTTCTGTTCGAATAAGTTGAGGAGTGTGACGAACTTCTTTATTGTCAACC
TAGCTGTGGCCGATCTTCTGGTGGGTTTGGCCGTCCTACCCTTCTCAGCC
ACCTGGGAAGTCTTCAAGGTTTGGATATTCGGCGATCTCTGGTGCCGCAT
TTGGCTGGCTGTCGATGTCTGGATGTGCACGGCATCGATCCTGAATCTGT
GTGCCATATCACTGGACCGCTATGTGGCGGTCACACGACCCGTCACCTAC
CCAAGCATAATGTCCACGAAGAAGGCCAAGTCCTTAATCGCCGGCATTTG
GGTACTCTCATTTTTTATTTGCTTTCCGCCGCTAGTCGGCTGGAAGGATC
AAAAGGCGGTTATACAGCCGACCTATCCAAAGGGAAACCATACGCTTTAC
TACACCACCACGATGTCAAGCTCGGAGGATGGTCAACTAGGGTTAGATAG
CATTAAGGACCAGGGCGAGGCATCCTTGCCTCCATCCCCGCCCCATATCG
GCAACGGCAACGCCTACAATCCCTACGATCCCGGTTTCGCACCCATCGAT
GGATCCGCGGAGATTCGGATTTGCGCCATTGACT
BO17173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3856-PA | 1938 | Oamb-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
| CG3856-PB | 1914 | Oamb-RB | 1..705 | 17..721 | 3525 | 100 | Plus |
| CG3856-PC | 1938 | Oamb-RC | 1..705 | 17..721 | 3525 | 100 | Plus |
| CG12073-PA | 1695 | 5-HT7-RA | 736..770 | 326..360 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oamb-RF | 4098 | CG3856-RF | 996..1714 | 16..734 | 3550 | 99.7 | Plus |
| Oamb-RE | 3443 | CG3856-RE | 996..1714 | 16..734 | 3550 | 99.7 | Plus |
| Oamb-RG | 4098 | CG3856-RG | 996..1714 | 16..734 | 3550 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20700592..20700846 | 270..16 | 1275 | 100 | Minus |
| 3R | 32079331 | 3R | 20700094..20700333 | 506..267 | 1200 | 100 | Minus |
| 3R | 32079331 | 3R | 20698629..20698859 | 734..504 | 1110 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:57:18 has no hits.
BO17173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:42 Download gff for
BO17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3856-PC | 1..718 | 17..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:29:48 Download gff for
BO17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RD | 957..1678 | 13..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:33 Download gff for
BO17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RG | 993..1714 | 13..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:33 Download gff for
BO17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20698629..20698857 | 506..734 | 99 | <- | Minus |
| 3R | 20700095..20700331 | 269..505 | 100 | <- | Minus |
| 3R | 20700594..20700849 | 13..268 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:29:48 Download gff for
BO17173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16524351..16524579 | 506..734 | 99 | <- | Minus |
| arm_3R | 16525817..16526053 | 269..505 | 100 | <- | Minus |
| arm_3R | 16526316..16526571 | 13..268 | 99 | | Minus |
BO17173.complete Sequence
1969 bp assembled on 2007-03-23
GenBank Submission: FJ634051
> BO17173.complete
GAAGTTATCAGTCGACATGAATGAAACAGAGTGCGAGGATCTCATCAAAT
CTGTGAAATGGACGGAACCAGCCAATCTGATCTCCCTGGCCGTACTCGAG
TTCATCAACGTTCTGGTCATCGGTGGCAACTGCCTCGTGATTGCCGCCGT
CTTCTGTTCGAATAAGTTGAGGAGTGTGACGAACTTCTTTATTGTCAACC
TAGCTGTGGCCGATCTTCTGGTGGGTTTGGCCGTCCTACCCTTCTCAGCC
ACCTGGGAAGTCTTCAAGGTTTGGATATTCGGCGATCTCTGGTGCCGCAT
TTGGCTGGCTGTCGATGTCTGGATGTGCACGGCATCGATCCTGAATCTGT
GTGCCATATCACTGGACCGCTATGTGGCGGTCACACGACCCGTCACCTAC
CCAAGCATAATGTCCACGAAGAAGGCCAAGTCCTTAATCGCCGGCATTTG
GGTACTCTCATTTTTTATTTGCTTTCCGCCGCTAGTCGGCTGGAAGGATC
AAAAGGCGGTTATACAGCCGACCTATCCAAAGGGAAACCATACGCTTTAC
TACACCACCACGATGTCAAGCTCGGAGGATGGTCAACTAGGGTTAGATAG
CATTAAGGACCAGGGCGAGGCATCCTTGCCTCCATCCCCGCCCCATATCG
GCAACGGCAACGCCTACAATCCCTACGATCCCGGTTTCGCACCCATCGAT
GGATCCGCGGAGATTCGGATTGCGGCCATTGACTCGACCAGTACTTCAAC
AACCGCAACCACCACGACGACAGCGTCCAGCTCGAGCACCACGGAAACGG
AAATGGACCTCGATCTACTGAACGCACCGCCGCAGAACAGACCCCAAACA
ATTTCCGGCAGTTGTCCGTGGAAGTGCGAGCTGACCAACGATCGGGGTTA
TGTCCTGTACTCCGCCCTGGGCTCATTCTATATACCCATGTTCGTGATGC
TCTTCTTCTACTGGCGCATCTACCGGGCTGCCGTGAGAACGACGAGAGCC
ATCAACCAGGGCTTCAAGACCACCAAGGGTTCCAAGGGCATCGGTTCTCG
CTTCGAGGAGCAACGCCTCACATTGCGCATACATAGAGGACGAGGATCAA
ACCAGCAGGACTCCATGCACAGCAACGGGAGCACTCAGAGCACCACCACC
ACCCTGGGCACCCCCTCCCCGGAGAGGTTGTCGAAGTACGCCACTAGGCG
ACTGCACCACCACGACAAGATCAAGATCTCGGTGTCCTACCCCTCCAGCG
AAAACATCAGCGAGCTTGCCGGACACGGGGATGTGGGTCACGAGCGGCGT
CAATCGGGAAACGCACTGTTCGCCGTCCATTACAACGGCACCAATGGTCG
GGAGTCCACGGAATCGCAGCTCTACCGACAGCAGCAGCAGCACGGCGTAG
CCAGCTCATGCTACCTGCAGGTGGGTAAGGGTCTACCGGAGTTGGCCAGG
CGGCAGAGCAACACCAGCGAGGCTGGAGGATCGGGACACTCGCGTCCGGC
CAACAAGAAGATGGGCAGGCGCAACATCAAGGCGCAGGTGAAGCGGTTCC
GCATGGAGACCAAGGCGGCCAAAACACTGGCCATCATCGTGGGCATGTTC
ATCTTCTGCTGGTGTCCCTTCTTCACCATGTACATCATCCGGCCGTTCTG
CCAGGACTGCGTCGACCCGCTGCTCTTTTCGGTGCTCTTTTGGCTTGGCT
ACTGCAACTCCGCCGTAAACCCCATGATCTACGCCCTGTTCTCAAAGGAC
TTTCGCTTCGCCTTCAAGCGGATTATCTGCAGGTGCTTCTGCTCCCGCCA
GTCCGTCTCCTTGAAGAGCTCCCGCCGGGGATCTGACATGTCGGCCATTC
GCATTCGGGCCCGAACGCCCAGCATAACGCCCAGTGCTGCGGCCCACAGT
TTCGGAGACGAGAGTGAACTGCACCATTCTGAGATGAGCAACGACCCCAG
GGCAAGCTTTCTAGACCAT
BO17173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oamb-RF | 1938 | CG3856-PF | 1..1935 | 17..1951 | 9675 | 100 | Plus |
| Oamb-RG | 2145 | CG3856-PG | 1..1935 | 17..1951 | 9675 | 100 | Plus |
| Oamb-RD | 2145 | CG3856-PD | 1..1935 | 17..1951 | 9675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oamb-RF | 4098 | CG3856-RF | 996..2931 | 16..1951 | 9680 | 100 | Plus |
| Oamb-RG | 4098 | CG3856-RG | 996..2931 | 16..1951 | 9680 | 100 | Plus |
| Oamb-RD | 4098 | CG3856-RD | 996..2931 | 16..1951 | 9680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20690185..20691108 | 1951..1028 | 4620 | 100 | Minus |
| 3R | 32079331 | 3R | 20698333..20698859 | 1030..504 | 2635 | 100 | Minus |
| 3R | 32079331 | 3R | 20700592..20700846 | 270..16 | 1275 | 100 | Minus |
| 3R | 32079331 | 3R | 20700094..20700333 | 506..267 | 1200 | 100 | Minus |
| 3R | 32079331 | 3R | 20693070..20693333 | 1798..1535 | 585 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:09:36 has no hits.
BO17173.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:37 Download gff for
BO17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RC | 1..1938 | 17..1954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:32 Download gff for
BO17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RC | 535..2469 | 17..1953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:16 Download gff for
BO17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RC | 535..2469 | 17..1953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:37 Download gff for
BO17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RC | 531..2469 | 13..1951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:11 Download gff for
BO17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RD | 997..2931 | 17..1953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:11 Download gff for
BO17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20690181..20691107 | 1029..1953 | 99 | <- | Minus |
| 3R | 20698335..20698857 | 506..1028 | 100 | <- | Minus |
| 3R | 20700095..20700331 | 269..505 | 100 | <- | Minus |
| 3R | 20700594..20700845 | 17..268 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:16 Download gff for
BO17173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16526316..16526567 | 17..268 | 100 | | Minus |
| arm_3R | 16515903..16516829 | 1029..1953 | 99 | <- | Minus |
| arm_3R | 16524057..16524579 | 506..1028 | 100 | <- | Minus |
| arm_3R | 16525817..16526053 | 269..505 | 100 | <- | Minus |
BO17173.pep Sequence
Translation from 16 to 1969
> BO17173.pep
MNETECEDLIKSVKWTEPANLISLAVLEFINVLVIGGNCLVIAAVFCSNK
LRSVTNFFIVNLAVADLLVGLAVLPFSATWEVFKVWIFGDLWCRIWLAVD
VWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSLIAGIWVLSFF
ICFPPLVGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQG
EASLPPSPPHIGNGNAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTT
TTASSSSTTETEMDLDLLNAPPQNRPQTISGSCPWKCELTNDRGYVLYSA
LGSFYIPMFVMLFFYWRIYRAAVRTTRAINQGFKTTKGSKGIGSRFEEQR
LTLRIHRGRGSNQQDSMHSNGSTQSTTTTLGTPSPERLSKYATRRLHHHD
KIKISVSYPSSENISELAGHGDVGHERRQSGNALFAVHYNGTNGRESTES
QLYRQQQQHGVASSCYLQVGKGLPELARRQSNTSEAGGSGHSRPANKKMG
RRNIKAQVKRFRMETKAAKTLAIIVGMFIFCWCPFFTMYIIRPFCQDCVD
PLLFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRIICRCFCSRQSVSLK
SSRRGSDMSAIRIRARTPSITPSAAAHSFGDESELHHSEMSNDPRASFLD
H
BO17173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oamb-PF | 645 | CG3856-PF | 1..645 | 1..645 | 3401 | 100 | Plus |
| Oamb-PG | 714 | CG3856-PG | 1..645 | 1..645 | 3401 | 100 | Plus |
| Oamb-PD | 751 | CG3856-PD | 1..645 | 1..645 | 3401 | 100 | Plus |
| Oamb-PC | 645 | CG3856-PC | 1..645 | 1..645 | 3401 | 100 | Plus |
| Oamb-PE | 682 | CG3856-PE | 1..597 | 1..594 | 2279 | 74.3 | Plus |
