Clone BO17184 Report

Search the DGRC for BO17184

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptRbp9-RE
Protein status:BO17184.pep: validated not full length
Sequenced Size:1351

Clone Sequence Records

BO17184.5prime Sequence

576 bp (497 high quality bases) assembled on 2006-10-13

> BO17184.5prime
GAAGTTATCAGTCGACATGGTCGAGGGTCAGACAGCCGTTCAGCAGCAGC
AGCAGCAACCATCCGGCGCGGGCGGTGCCAGCGGCGTGGGAAGCACCACC
GGATCCGCTGGAGGACCGGCTACGGCCAACAATGTGACCAACAGTCAGGC
CCAAACCAATGGGGGCACCACTGCGACCACGACTGCCGCAGCGGGTGCCG
GATCCACGACAAATGCGGCCGTCGGCCAGGCCACAGCAAACAATGCTGCG
AGCAACAACAACAATAATAATAATAATACCAACAACAACAATAACAATAA
CGCCACTGCAAACAACAACAACAATAATGAGCCAGACCCCAAGACCAATT
TGATTGTGAACTACTTGCCACAGACGATGTCGCAGGACGAGATCCGTTCG
TTGTTCGTCAGTTTTGGCGAGGTGGAGAGCTGCAAGTTGATACGCGACAA
GGTGACAGGACAAAGTCTGGGCTACGGATTCGTGAACTACGTGAAGCAGG
AGGATGCGGAAAAGGCAATCAACGCATTGAACGGCCTCAGGCTGCAGAAC
AAAACCATCAGGGTCTCCATTGCACG

BO17184.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3151-PC 1335 Rbp9-RC 1..560 17..576 2775 99.8 Plus
CG3151-PE 1320 Rbp9-RE 1..560 17..576 2775 99.8 Plus
CG3151-PD 1929 Rbp9-RD 610..1169 17..576 2775 99.8 Plus
CG3151-PB 1335 Rbp9-RB 1..560 17..576 2775 99.8 Plus
CG3151-PA 1944 Rbp9-RA 610..1169 17..576 2775 99.8 Plus
CG3151-PF 1320 Rbp9-RF 1..560 17..576 2775 99.8 Plus
CG3151-PG 1320 Rbp9-RG 1..560 17..576 2775 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp9-RK 3187 CG3151-RK 388..947 17..576 2785 99.8 Plus
Rbp9-RI 3493 CG3151-RI 694..1253 17..576 2785 99.8 Plus
Rbp9-RH 3478 CG3151-RH 694..1253 17..576 2785 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2961231..2961673 17..459 2215 100 Plus
2L 23513712 2L 2961735..2961856 455..576 595 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 15:16:26 has no hits.

BO17184.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:45 Download gff for BO17184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3151-PG 1..560 17..576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:21:20 Download gff for BO17184.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RH 687..1253 8..576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:36 Download gff for BO17184.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RH 687..1253 8..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:36 Download gff for BO17184.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2961224..2961672 8..458 99 -> Plus
2L 2961739..2961856 459..576 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:20 Download gff for BO17184.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2961224..2961672 8..458 99 -> Plus
arm_2L 2961739..2961856 459..576 99   Plus

BO17184.3prime Sequence

447 bp (388 high quality bases) assembled on 2006-10-13

> BO17184.3prime
ATGGTCTAGAAAGCTTGCCGTTTGCTTGTTCTTGTTGGTCTTAAAGCTGA
CCTGAAGCACTCGGTTGCCAAGTGTGTAGCCGTTCAGCGACTGTATGGCC
AGGACAGCCTCTTCGTAATTCGTCATGGTGACGAAGCCAAAGCCCTTGCA
CTTGTTGCTCTGCAGATCACGAATCACCTTAACAGATTGCACTGCTCCGA
AGGGCCCAAACAGTTGCCACAGCACGTTCTCCTCGGTATCGGGCGCCAGG
TTGTAGACGAAAATGCACCAGCCGGAGCTGGCAATGGTGTTGCCTTGGAT
CATGCCATTAGTGATCAGGTCACTGGTCAACGGTGAATATCGCGAGATTA
CAGAGCTGTATCGGCCCGCATTGGGGTGGATGGCAGCTGCAGCGGCGGCG
GCTGCCGCTCCGGTAGCAGCGTTGGACCGGAAATGCTCGTCCGCCTC

BO17184.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3151-PC 1335 Rbp9-RC 907..1332 445..19 2070 99.5 Minus
CG3151-PE 1320 Rbp9-RE 892..1317 445..19 2070 99.5 Minus
CG3151-PD 1929 Rbp9-RD 1501..1926 445..19 2070 99.5 Minus
CG3151-PB 1335 Rbp9-RB 907..1332 445..19 2070 99.5 Minus
CG3151-PA 1944 Rbp9-RA 1516..1941 445..19 2070 99.5 Minus
CG3151-PF 1320 Rbp9-RF 892..1317 445..19 2070 99.5 Minus
CG3151-PG 1320 Rbp9-RG 892..1317 445..19 2070 99.5 Minus
CG4396-PA 1071 fne-RA 817..872 270..215 155 91 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp9-RK 3187 CG3151-RK 1294..1719 445..19 2095 99.5 Minus
Rbp9-RI 3493 CG3151-RI 1600..2025 445..19 2095 99.5 Minus
Rbp9-RH 3478 CG3151-RH 1585..2010 445..19 2095 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2962951..2963136 359..174 930 100 Minus
2L 23513712 2L 2963223..2963383 179..19 805 100 Minus
X 23542271 X 12945236..12945480 270..26 640 84.1 Minus
2L 23513712 2L 2962777..2962865 445..356 385 97.8 Minus
X 23542271 X 517802..518035 32..265 345 76.5 Plus
Blast to na_te.dros performed on 2015-02-12 07:38:33 has no hits.

BO17184.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:44 Download gff for BO17184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3151-PC 905..1335 15..447 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:08:07 Download gff for BO17184.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RH 1583..2015 11..447 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:18:38 Download gff for BO17184.3prime
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RH 1583..2015 11..447 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:18:38 Download gff for BO17184.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2962775..2962865 356..447 96 -> Minus
2L 2962955..2963132 178..355 100 -> Minus
2L 2963225..2963388 11..177 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:08:07 Download gff for BO17184.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2962955..2963132 178..355 100 -> Minus
arm_2L 2963225..2963388 11..177 97   Minus
arm_2L 2962775..2962865 356..447 96 -> Minus

BO17184.complete Sequence

1351 bp assembled on 2007-03-23

GenBank Submission: FJ634052

> BO17184.complete
GAAGTTATCAGTCGACATGGTCGAGGGTCAGACAGCCGTTCAGCAGCAGC
AGCAGCAACCATCCGGCGCGGGCGGTGCCAGCGGCGTGGGAAGCACCACC
GGATCCGCTGGAGGACCGGCTACGGCCAACAATGTGACCAACAGTCAGGC
CCAAACCAATGGGGGCACCACTGCGACCACGACTGCCGCAGCGGGTGCCG
GATCCACGACAAATGCGGCCGTCGGCCAGGCCACAGCAAACAATGCTGCG
AGCAACAACAACAATAATAATAATAATACCAACAACAACAATAACAATAA
CGCCACTGCAAACAACAACAACAATAATGAGCCAGACCCCAAGACCAATT
TGATTGTGAACTACTTGCCACAGACGATGTCGCAGGACGAGATCCGTTCG
TTGTTCGTCAGTTTTGGCGAGGTGGAGAGCTGCAAGTTGATACGCGACAA
GGTGACAGGACAAAGTCTGGGCTACGGATTCGTGAACTACGTGAAGCAGG
AGGATGCGGAAAAGGCAATCAACGCATTGAACGGCCTCAGGCTGCAGAAC
AAAACCATCAAGGTCTCCATTGCACGCCCCAGCTCCGAGAGCATCAAGGG
TGCCAATCTCTATGTATCGGGTCTTCCAAAAAATATGACACAGTCGGATT
TGGAATCATTGTTCAGTCCATACGGCAAGATCATAACCTCGCGTATTCTT
TGTGATAATATCACTGGTCTCTCCAAGGGCGTTGGCTTTATACGCTTCGA
TCAGCGATTTGAGGCCGACCGGGCCATTAAAGAGCTGAACGGCACCACTC
CGAAGAATTCCACCGAACCCATAACCGTCAAGTTCGCCAACAATCCTAGC
AGCAATAAGAACAGCATGCAGCCTTTGGCAGCCTATATAGCGCCCCAAAA
TACGCGTGGCGGACGAGCATTTCCGGCCAACGCTGCTGCCGGAGCGGCAG
CCGCCGCCGCTGCAGCTGCCATCCACCCCAATGCGGGCCGATACAGCTCT
GTAATCTCGCGATATTCACCGTTGACCAGTGACCTGATCACTAATGGCAT
GATCCAAGGCAACACCATTGCCAGCTCCGGCTGGTGCATTTTCGTCTACA
ACCTGGCGCCCGATACCGAGGAGAACGTGCTGTGGCAACTGTTTGGGCCC
TTCGGAGCAGTGCAATCTGTTAAGGTGATTCGTGATCTGCAGAGCAACAA
GTGCAAGGGCTTTGGCTTCGTCACCATGACGAATTACGAAGAGGCTGTCC
TGGCCATACAGTCGCTGAACGGCTACACACTTGGCAACCGAGTGCTTCAG
GTCAGCTTTAAGACCAACAAGAACAAGCAAACGGCAAGCTTTCTAGACCA
T

BO17184.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp9-RH 1320 CG3151-PH 1..1317 17..1333 6585 100 Plus
Rbp9-RJ 2055 CG3151-PJ 1..1317 17..1333 6585 100 Plus
Rbp9-RG 1320 CG3151-PG 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp9-RH 3478 CG3151-RH 694..2010 17..1333 6585 100 Plus
Rbp9-RJ 3390 CG3151-RJ 606..1922 17..1333 6585 100 Plus
Rbp9-RG 6976 CG3151-RG 609..1925 17..1333 6585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2961231..2961673 17..459 2215 100 Plus
2L 23513712 2L 2962585..2962865 716..996 1405 100 Plus
2L 23513712 2L 2961735..2961998 455..718 1320 100 Plus
2L 23513712 2L 2962951..2963136 993..1178 930 100 Plus
2L 23513712 2L 2963223..2963383 1173..1333 805 100 Plus
X 23542271 X 12945236..12945480 1082..1326 640 84.1 Plus
X 23542271 X 517802..518035 1320..1087 345 76.5 Minus
X 23542271 X 12943512..12943647 716..851 215 77.2 Plus
Blast to na_te.dros performed on 2014-11-27 08:07:11 has no hits.

BO17184.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:38 Download gff for BO17184.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RI 1..697 17..713 100 <- Plus
Rbp9-RI 714..1335 714..1337 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:26 Download gff for BO17184.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RI 687..1390 8..713 99 <- Plus
Rbp9-RI 1407..2030 714..1341 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:37 Download gff for BO17184.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RG 609..1925 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:39 Download gff for BO17184.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RI 687..1390 8..713 99 <- Plus
Rbp9-RI 1407..2030 714..1341 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:23 Download gff for BO17184.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RG 609..1925 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:23 Download gff for BO17184.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2962586..2962865 717..996 100 -> Plus
2L 2962955..2963132 997..1174 100 -> Plus
2L 2963225..2963383 1175..1335 98   Plus
2L 2961231..2961672 17..458 100 -> Plus
2L 2961739..2961996 459..716 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:37 Download gff for BO17184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2962955..2963132 997..1174 100 -> Plus
arm_2L 2963225..2963383 1175..1335 98   Plus
arm_2L 2961231..2961672 17..458 100 -> Plus
arm_2L 2961739..2961996 459..716 100 -> Plus
arm_2L 2962586..2962865 717..996 100 -> Plus

BO17184.pep Sequence

Translation from 16 to 1351

> BO17184.pep
MVEGQTAVQQQQQQPSGAGGASGVGSTTGSAGGPATANNVTNSQAQTNGG
TTATTTAAAGAGSTTNAAVGQATANNAASNNNNNNNNTNNNNNNNATANN
NNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS
LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYV
SGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEA
DRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAAYIAPQNTRGGR
AFPANAAAGAAAAAAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQGNT
IASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFG
FVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNKNKQTASFLDH

BO17184.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp9-PH 439 CG3151-PH 1..439 1..439 2243 100 Plus
Rbp9-PJ 684 CG3151-PJ 1..439 1..439 2243 100 Plus
Rbp9-PG 439 CG3151-PG 1..439 1..439 2243 100 Plus
Rbp9-PF 439 CG3151-PF 1..439 1..439 2243 100 Plus
Rbp9-PE 439 CG3151-PE 1..439 1..439 2243 100 Plus