Clone Sequence Records
BO17184.5prime Sequence
576 bp (497 high quality bases) assembled on 2006-10-13
> BO17184.5prime
GAAGTTATCAGTCGACATGGTCGAGGGTCAGACAGCCGTTCAGCAGCAGC
AGCAGCAACCATCCGGCGCGGGCGGTGCCAGCGGCGTGGGAAGCACCACC
GGATCCGCTGGAGGACCGGCTACGGCCAACAATGTGACCAACAGTCAGGC
CCAAACCAATGGGGGCACCACTGCGACCACGACTGCCGCAGCGGGTGCCG
GATCCACGACAAATGCGGCCGTCGGCCAGGCCACAGCAAACAATGCTGCG
AGCAACAACAACAATAATAATAATAATACCAACAACAACAATAACAATAA
CGCCACTGCAAACAACAACAACAATAATGAGCCAGACCCCAAGACCAATT
TGATTGTGAACTACTTGCCACAGACGATGTCGCAGGACGAGATCCGTTCG
TTGTTCGTCAGTTTTGGCGAGGTGGAGAGCTGCAAGTTGATACGCGACAA
GGTGACAGGACAAAGTCTGGGCTACGGATTCGTGAACTACGTGAAGCAGG
AGGATGCGGAAAAGGCAATCAACGCATTGAACGGCCTCAGGCTGCAGAAC
AAAACCATCAGGGTCTCCATTGCACG
BO17184.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3151-PC | 1335 | Rbp9-RC | 1..560 | 17..576 | 2775 | 99.8 | Plus |
CG3151-PE | 1320 | Rbp9-RE | 1..560 | 17..576 | 2775 | 99.8 | Plus |
CG3151-PD | 1929 | Rbp9-RD | 610..1169 | 17..576 | 2775 | 99.8 | Plus |
CG3151-PB | 1335 | Rbp9-RB | 1..560 | 17..576 | 2775 | 99.8 | Plus |
CG3151-PA | 1944 | Rbp9-RA | 610..1169 | 17..576 | 2775 | 99.8 | Plus |
CG3151-PF | 1320 | Rbp9-RF | 1..560 | 17..576 | 2775 | 99.8 | Plus |
CG3151-PG | 1320 | Rbp9-RG | 1..560 | 17..576 | 2775 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp9-RK | 3187 | CG3151-RK | 388..947 | 17..576 | 2785 | 99.8 | Plus |
Rbp9-RI | 3493 | CG3151-RI | 694..1253 | 17..576 | 2785 | 99.8 | Plus |
Rbp9-RH | 3478 | CG3151-RH | 694..1253 | 17..576 | 2785 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2961231..2961673 | 17..459 | 2215 | 100 | Plus |
2L | 23513712 | 2L | 2961735..2961856 | 455..576 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:16:26 has no hits.
BO17184.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:45 Download gff for
BO17184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3151-PG | 1..560 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:21:20 Download gff for
BO17184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp9-RH | 687..1253 | 8..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:36 Download gff for
BO17184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp9-RH | 687..1253 | 8..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:36 Download gff for
BO17184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2961224..2961672 | 8..458 | 99 | -> | Plus |
2L | 2961739..2961856 | 459..576 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:20 Download gff for
BO17184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2961224..2961672 | 8..458 | 99 | -> | Plus |
arm_2L | 2961739..2961856 | 459..576 | 99 | | Plus |
BO17184.3prime Sequence
447 bp (388 high quality bases) assembled on 2006-10-13
> BO17184.3prime
ATGGTCTAGAAAGCTTGCCGTTTGCTTGTTCTTGTTGGTCTTAAAGCTGA
CCTGAAGCACTCGGTTGCCAAGTGTGTAGCCGTTCAGCGACTGTATGGCC
AGGACAGCCTCTTCGTAATTCGTCATGGTGACGAAGCCAAAGCCCTTGCA
CTTGTTGCTCTGCAGATCACGAATCACCTTAACAGATTGCACTGCTCCGA
AGGGCCCAAACAGTTGCCACAGCACGTTCTCCTCGGTATCGGGCGCCAGG
TTGTAGACGAAAATGCACCAGCCGGAGCTGGCAATGGTGTTGCCTTGGAT
CATGCCATTAGTGATCAGGTCACTGGTCAACGGTGAATATCGCGAGATTA
CAGAGCTGTATCGGCCCGCATTGGGGTGGATGGCAGCTGCAGCGGCGGCG
GCTGCCGCTCCGGTAGCAGCGTTGGACCGGAAATGCTCGTCCGCCTC
BO17184.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3151-PC | 1335 | Rbp9-RC | 907..1332 | 445..19 | 2070 | 99.5 | Minus |
CG3151-PE | 1320 | Rbp9-RE | 892..1317 | 445..19 | 2070 | 99.5 | Minus |
CG3151-PD | 1929 | Rbp9-RD | 1501..1926 | 445..19 | 2070 | 99.5 | Minus |
CG3151-PB | 1335 | Rbp9-RB | 907..1332 | 445..19 | 2070 | 99.5 | Minus |
CG3151-PA | 1944 | Rbp9-RA | 1516..1941 | 445..19 | 2070 | 99.5 | Minus |
CG3151-PF | 1320 | Rbp9-RF | 892..1317 | 445..19 | 2070 | 99.5 | Minus |
CG3151-PG | 1320 | Rbp9-RG | 892..1317 | 445..19 | 2070 | 99.5 | Minus |
CG4396-PA | 1071 | fne-RA | 817..872 | 270..215 | 155 | 91 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp9-RK | 3187 | CG3151-RK | 1294..1719 | 445..19 | 2095 | 99.5 | Minus |
Rbp9-RI | 3493 | CG3151-RI | 1600..2025 | 445..19 | 2095 | 99.5 | Minus |
Rbp9-RH | 3478 | CG3151-RH | 1585..2010 | 445..19 | 2095 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2962951..2963136 | 359..174 | 930 | 100 | Minus |
2L | 23513712 | 2L | 2963223..2963383 | 179..19 | 805 | 100 | Minus |
X | 23542271 | X | 12945236..12945480 | 270..26 | 640 | 84.1 | Minus |
2L | 23513712 | 2L | 2962777..2962865 | 445..356 | 385 | 97.8 | Minus |
X | 23542271 | X | 517802..518035 | 32..265 | 345 | 76.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 07:38:33 has no hits.
BO17184.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:44 Download gff for
BO17184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3151-PC | 905..1335 | 15..447 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:08:07 Download gff for
BO17184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp9-RH | 1583..2015 | 11..447 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:18:38 Download gff for
BO17184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp9-RH | 1583..2015 | 11..447 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:18:38 Download gff for
BO17184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2962775..2962865 | 356..447 | 96 | -> | Minus |
2L | 2962955..2963132 | 178..355 | 100 | -> | Minus |
2L | 2963225..2963388 | 11..177 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:08:07 Download gff for
BO17184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2962955..2963132 | 178..355 | 100 | -> | Minus |
arm_2L | 2963225..2963388 | 11..177 | 97 | | Minus |
arm_2L | 2962775..2962865 | 356..447 | 96 | -> | Minus |
BO17184.complete Sequence
1351 bp assembled on 2007-03-23
GenBank Submission: FJ634052
> BO17184.complete
GAAGTTATCAGTCGACATGGTCGAGGGTCAGACAGCCGTTCAGCAGCAGC
AGCAGCAACCATCCGGCGCGGGCGGTGCCAGCGGCGTGGGAAGCACCACC
GGATCCGCTGGAGGACCGGCTACGGCCAACAATGTGACCAACAGTCAGGC
CCAAACCAATGGGGGCACCACTGCGACCACGACTGCCGCAGCGGGTGCCG
GATCCACGACAAATGCGGCCGTCGGCCAGGCCACAGCAAACAATGCTGCG
AGCAACAACAACAATAATAATAATAATACCAACAACAACAATAACAATAA
CGCCACTGCAAACAACAACAACAATAATGAGCCAGACCCCAAGACCAATT
TGATTGTGAACTACTTGCCACAGACGATGTCGCAGGACGAGATCCGTTCG
TTGTTCGTCAGTTTTGGCGAGGTGGAGAGCTGCAAGTTGATACGCGACAA
GGTGACAGGACAAAGTCTGGGCTACGGATTCGTGAACTACGTGAAGCAGG
AGGATGCGGAAAAGGCAATCAACGCATTGAACGGCCTCAGGCTGCAGAAC
AAAACCATCAAGGTCTCCATTGCACGCCCCAGCTCCGAGAGCATCAAGGG
TGCCAATCTCTATGTATCGGGTCTTCCAAAAAATATGACACAGTCGGATT
TGGAATCATTGTTCAGTCCATACGGCAAGATCATAACCTCGCGTATTCTT
TGTGATAATATCACTGGTCTCTCCAAGGGCGTTGGCTTTATACGCTTCGA
TCAGCGATTTGAGGCCGACCGGGCCATTAAAGAGCTGAACGGCACCACTC
CGAAGAATTCCACCGAACCCATAACCGTCAAGTTCGCCAACAATCCTAGC
AGCAATAAGAACAGCATGCAGCCTTTGGCAGCCTATATAGCGCCCCAAAA
TACGCGTGGCGGACGAGCATTTCCGGCCAACGCTGCTGCCGGAGCGGCAG
CCGCCGCCGCTGCAGCTGCCATCCACCCCAATGCGGGCCGATACAGCTCT
GTAATCTCGCGATATTCACCGTTGACCAGTGACCTGATCACTAATGGCAT
GATCCAAGGCAACACCATTGCCAGCTCCGGCTGGTGCATTTTCGTCTACA
ACCTGGCGCCCGATACCGAGGAGAACGTGCTGTGGCAACTGTTTGGGCCC
TTCGGAGCAGTGCAATCTGTTAAGGTGATTCGTGATCTGCAGAGCAACAA
GTGCAAGGGCTTTGGCTTCGTCACCATGACGAATTACGAAGAGGCTGTCC
TGGCCATACAGTCGCTGAACGGCTACACACTTGGCAACCGAGTGCTTCAG
GTCAGCTTTAAGACCAACAAGAACAAGCAAACGGCAAGCTTTCTAGACCA
T
BO17184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp9-RH | 1320 | CG3151-PH | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Rbp9-RJ | 2055 | CG3151-PJ | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Rbp9-RG | 1320 | CG3151-PG | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp9-RH | 3478 | CG3151-RH | 694..2010 | 17..1333 | 6585 | 100 | Plus |
Rbp9-RJ | 3390 | CG3151-RJ | 606..1922 | 17..1333 | 6585 | 100 | Plus |
Rbp9-RG | 6976 | CG3151-RG | 609..1925 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2961231..2961673 | 17..459 | 2215 | 100 | Plus |
2L | 23513712 | 2L | 2962585..2962865 | 716..996 | 1405 | 100 | Plus |
2L | 23513712 | 2L | 2961735..2961998 | 455..718 | 1320 | 100 | Plus |
2L | 23513712 | 2L | 2962951..2963136 | 993..1178 | 930 | 100 | Plus |
2L | 23513712 | 2L | 2963223..2963383 | 1173..1333 | 805 | 100 | Plus |
X | 23542271 | X | 12945236..12945480 | 1082..1326 | 640 | 84.1 | Plus |
X | 23542271 | X | 517802..518035 | 1320..1087 | 345 | 76.5 | Minus |
X | 23542271 | X | 12943512..12943647 | 716..851 | 215 | 77.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:07:11 has no hits.
BO17184.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:38 Download gff for
BO17184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp9-RI | 1..697 | 17..713 | 100 | <- | Plus |
Rbp9-RI | 714..1335 | 714..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:26 Download gff for
BO17184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp9-RI | 687..1390 | 8..713 | 99 | <- | Plus |
Rbp9-RI | 1407..2030 | 714..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:37 Download gff for
BO17184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp9-RG | 609..1925 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:39 Download gff for
BO17184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp9-RI | 687..1390 | 8..713 | 99 | <- | Plus |
Rbp9-RI | 1407..2030 | 714..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:23 Download gff for
BO17184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbp9-RG | 609..1925 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:23 Download gff for
BO17184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2962586..2962865 | 717..996 | 100 | -> | Plus |
2L | 2962955..2963132 | 997..1174 | 100 | -> | Plus |
2L | 2963225..2963383 | 1175..1335 | 98 | | Plus |
2L | 2961231..2961672 | 17..458 | 100 | -> | Plus |
2L | 2961739..2961996 | 459..716 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:37 Download gff for
BO17184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2962955..2963132 | 997..1174 | 100 | -> | Plus |
arm_2L | 2963225..2963383 | 1175..1335 | 98 | | Plus |
arm_2L | 2961231..2961672 | 17..458 | 100 | -> | Plus |
arm_2L | 2961739..2961996 | 459..716 | 100 | -> | Plus |
arm_2L | 2962586..2962865 | 717..996 | 100 | -> | Plus |
BO17184.pep Sequence
Translation from 16 to 1351
> BO17184.pep
MVEGQTAVQQQQQQPSGAGGASGVGSTTGSAGGPATANNVTNSQAQTNGG
TTATTTAAAGAGSTTNAAVGQATANNAASNNNNNNNNTNNNNNNNATANN
NNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS
LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYV
SGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEA
DRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAAYIAPQNTRGGR
AFPANAAAGAAAAAAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQGNT
IASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFG
FVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNKNKQTASFLDH
BO17184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbp9-PH | 439 | CG3151-PH | 1..439 | 1..439 | 2243 | 100 | Plus |
Rbp9-PJ | 684 | CG3151-PJ | 1..439 | 1..439 | 2243 | 100 | Plus |
Rbp9-PG | 439 | CG3151-PG | 1..439 | 1..439 | 2243 | 100 | Plus |
Rbp9-PF | 439 | CG3151-PF | 1..439 | 1..439 | 2243 | 100 | Plus |
Rbp9-PE | 439 | CG3151-PE | 1..439 | 1..439 | 2243 | 100 | Plus |