Clone Sequence Records
BO17188.3prime Sequence
707 bp (646 high quality bases) assembled on 2006-10-13
> BO17188.3prime
ATGGTCTAGAAAGCTTGCTACCTTGGGCTCATCAATGTCGCGCACCTCGT
TATCCTGTGGCTGCTTCTCCAGCGGCTCGCGGCGATCATCGTCGTCCTCC
TCGTCGAACTCCTCGAACTTCTTGGGCGGGGCGGAGGTGCTGGGCTCCAA
CGCCGGCTGGAAGTCACCTCCACTGGTGTGCACTCCCTGGGCCACCTCCT
CGCCGCTCTCCAAAGGACGCACATTCACCAAGCGGACCTTAAAGACGCTG
TTGCTATCACCATACACAGTCTCGTTGATCTCAACCTTATGGCCATTGAC
AACCTTAATGGTGGAAGTGGTGTTGGCGTTCTTCGAGTCCAGCGGAATCA
GAGGACGCACTCCAAATGGAAAGCCTGCTCCGCTGCCATCACTAGAATCA
TCAGAGTCGCCAGTCGGAGAAGCGCCCTCCTCACCGGAATCCCTGCCAAT
TACAGGCCACAAACGGGTGCGCAGACGGCGGAAGAGATCATCGAAGGAGT
CGAAGATGCCCACATTGAAGCTCGAAGGATTCGGCTGAAGGAAGGGATAA
CCAGAGCCGGTATCGATGACGCCGCGGAAGTTATGGAAATCCGATTCGGG
CTGAGGGCGTGATGGTACTTTAATCACTTCCGCATCGTCCTGTGGATCGT
TGCGCGCTGGGCATGTGAAAACGCCGCTAAAGGCTAGCACGGTCATCAGC
AAACCGA
BO17188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31764-PC | 705 | vir-1-RC | 14..702 | 707..19 | 3370 | 99.5 | Minus |
CG31764-PA | 1296 | vir-1-RA | 14..699 | 707..22 | 3355 | 99.5 | Minus |
CG31764-PB | 1296 | vir-1-RB | 14..699 | 707..22 | 3355 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-RH | 1121 | CG31764-RH | 245..933 | 707..19 | 3400 | 99.6 | Minus |
vir-1-RC | 1048 | CG31764-RC | 172..860 | 707..19 | 3400 | 99.6 | Minus |
vir-1-RB | 1849 | CG31764-RB | 256..941 | 707..22 | 3385 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12407182..12407468 | 19..305 | 1435 | 100 | Plus |
2L | 23513712 | 2L | 12407548..12407735 | 302..489 | 940 | 100 | Plus |
2L | 23513712 | 2L | 12409456..12409626 | 489..659 | 855 | 100 | Plus |
2L | 23513712 | 2L | 12421647..12421691 | 663..707 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:18:44 has no hits.
BO17188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:47 Download gff for
BO17188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31764-PC | 15..705 | 15..706 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:49 Download gff for
BO17188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 173..872 | 7..706 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:37 Download gff for
BO17188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 173..872 | 7..706 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:37 Download gff for
BO17188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12407170..12407466 | 7..303 | 98 | <- | Plus |
2L | 12407550..12407734 | 304..488 | 100 | <- | Plus |
2L | 12409456..12409623 | 489..656 | 100 | <- | Plus |
2L | 12421641..12421690 | 657..706 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:49 Download gff for
BO17188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12407170..12407466 | 7..303 | 98 | <- | Plus |
arm_2L | 12407550..12407734 | 304..488 | 100 | <- | Plus |
arm_2L | 12409456..12409623 | 489..656 | 100 | <- | Plus |
arm_2L | 12421641..12421690 | 657..706 | 94 | | Plus |
BO17188.5prime Sequence
677 bp (661 high quality bases) assembled on 2006-10-13
> BO17188.5prime
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGC
BO17188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31764-PC | 705 | vir-1-RC | 1..661 | 17..677 | 3305 | 100 | Plus |
CG31764-PA | 1296 | vir-1-RA | 1..661 | 17..677 | 3305 | 100 | Plus |
CG31764-PB | 1296 | vir-1-RB | 1..661 | 17..677 | 3305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-RH | 1121 | CG31764-RH | 232..892 | 17..677 | 3305 | 100 | Plus |
vir-1-RG | 1814 | CG31764-RG | 232..892 | 17..677 | 3305 | 100 | Plus |
vir-1-RB | 1849 | CG31764-RB | 243..903 | 17..677 | 3305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12407223..12407468 | 677..432 | 1230 | 100 | Minus |
2L | 23513712 | 2L | 12407548..12407735 | 435..248 | 940 | 100 | Minus |
2L | 23513712 | 2L | 12409456..12409626 | 248..78 | 855 | 100 | Minus |
2L | 23513712 | 2L | 12421641..12421704 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:13:40 has no hits.
BO17188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:48 Download gff for
BO17188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31764-PB | 1..661 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:04 Download gff for
BO17188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RB | 243..903 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:01 Download gff for
BO17188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RB | 243..903 | 17..677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:01 Download gff for
BO17188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
2L | 12407223..12407466 | 434..677 | 100 | <- | Minus |
2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
2L | 12421641..12421704 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:04 Download gff for
BO17188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12407223..12407466 | 434..677 | 100 | <- | Minus |
arm_2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
arm_2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
arm_2L | 12421641..12421704 | 17..80 | 100 | | Minus |
BO17188.complete Sequence
736 bp assembled on 2006-10-11
GenBank Submission: FJ634053
> BO17188.complete
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGAC
ATTGATGAGCCCAAGGTAGCAAGCTTTCTAGACCAT
BO17188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-RH | 705 | CG31764-PH | 1..702 | 17..718 | 3510 | 100 | Plus |
vir-1-RC | 705 | CG31764-PC | 1..702 | 17..718 | 3510 | 100 | Plus |
vir-1-RB | 1296 | CG31764-PB | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-RH | 1121 | CG31764-RH | 232..933 | 17..718 | 3510 | 100 | Plus |
vir-1-RC | 1048 | CG31764-RC | 159..860 | 17..718 | 3510 | 100 | Plus |
vir-1-RB | 1849 | CG31764-RB | 243..941 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12407182..12407468 | 718..432 | 1435 | 100 | Minus |
2L | 23513712 | 2L | 12407548..12407735 | 435..248 | 940 | 100 | Minus |
2L | 23513712 | 2L | 12409456..12409626 | 248..78 | 855 | 100 | Minus |
2L | 23513712 | 2L | 12421641..12421704 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:23:07 has no hits.
BO17188.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:00 Download gff for
BO17188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:00 Download gff for
BO17188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 138..839 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:15 Download gff for
BO17188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 159..860 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:00 Download gff for
BO17188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 138..851 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:55 Download gff for
BO17188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vir-1-RC | 159..860 | 17..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:55 Download gff for
BO17188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
2L | 12421641..12421704 | 17..80 | 100 | | Minus |
2L | 12407180..12407466 | 434..720 | 99 | <- | Minus |
2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:15 Download gff for
BO17188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12409456..12409623 | 81..248 | 100 | <- | Minus |
arm_2L | 12421641..12421704 | 17..80 | 100 | | Minus |
arm_2L | 12407550..12407734 | 249..433 | 100 | <- | Minus |
arm_2L | 12407180..12407466 | 434..720 | 99 | <- | Minus |
BO17188.pep Sequence
Translation from 16 to 736
> BO17188.pep
MKLLFGLLMTVLALSGVFTLPARNDPQDDAEVIKVPSRPQPESDFHNFRG
VIDTGSGYPFLQPNPSSFNVGIFDSFDDLFRRLRTRLWPVIGRDSGEEGA
SPTGDSDDSSDGSGAGFPFGVRPLIPLDSKNANTTSTIKVVNGHKVEINE
TVYGDSNSVFKVRLVNVRPLESGEEVAQGVHTSGGDFQPALEPSTSAPPK
KFEEFDEEDDDDRREPLEKQPQDNEVRDIDEPKVASFLDH
BO17188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vir-1-PH | 234 | CG31764-PH | 1..234 | 1..234 | 1226 | 100 | Plus |
vir-1-PC | 234 | CG31764-PC | 1..234 | 1..234 | 1226 | 100 | Plus |
vir-1-PB | 431 | CG31764-PB | 1..233 | 1..233 | 1222 | 100 | Plus |
vir-1-PA | 431 | CG31764-PA | 1..233 | 1..233 | 1222 | 100 | Plus |
vir-1-PG | 423 | CG31764-PG | 1..225 | 1..225 | 1180 | 100 | Plus |