Clone BO17188 Report

Search the DGRC for BO17188

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:88
Vector:pDNR-Dual
Associated Gene/Transcriptvir-1-RC
Protein status:BO17188.pep: validated full length
Sequenced Size:736

Clone Sequence Records

BO17188.3prime Sequence

707 bp (646 high quality bases) assembled on 2006-10-13

> BO17188.3prime
ATGGTCTAGAAAGCTTGCTACCTTGGGCTCATCAATGTCGCGCACCTCGT
TATCCTGTGGCTGCTTCTCCAGCGGCTCGCGGCGATCATCGTCGTCCTCC
TCGTCGAACTCCTCGAACTTCTTGGGCGGGGCGGAGGTGCTGGGCTCCAA
CGCCGGCTGGAAGTCACCTCCACTGGTGTGCACTCCCTGGGCCACCTCCT
CGCCGCTCTCCAAAGGACGCACATTCACCAAGCGGACCTTAAAGACGCTG
TTGCTATCACCATACACAGTCTCGTTGATCTCAACCTTATGGCCATTGAC
AACCTTAATGGTGGAAGTGGTGTTGGCGTTCTTCGAGTCCAGCGGAATCA
GAGGACGCACTCCAAATGGAAAGCCTGCTCCGCTGCCATCACTAGAATCA
TCAGAGTCGCCAGTCGGAGAAGCGCCCTCCTCACCGGAATCCCTGCCAAT
TACAGGCCACAAACGGGTGCGCAGACGGCGGAAGAGATCATCGAAGGAGT
CGAAGATGCCCACATTGAAGCTCGAAGGATTCGGCTGAAGGAAGGGATAA
CCAGAGCCGGTATCGATGACGCCGCGGAAGTTATGGAAATCCGATTCGGG
CTGAGGGCGTGATGGTACTTTAATCACTTCCGCATCGTCCTGTGGATCGT
TGCGCGCTGGGCATGTGAAAACGCCGCTAAAGGCTAGCACGGTCATCAGC
AAACCGA

BO17188.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31764-PC 705 vir-1-RC 14..702 707..19 3370 99.5 Minus
CG31764-PA 1296 vir-1-RA 14..699 707..22 3355 99.5 Minus
CG31764-PB 1296 vir-1-RB 14..699 707..22 3355 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-RH 1121 CG31764-RH 245..933 707..19 3400 99.6 Minus
vir-1-RC 1048 CG31764-RC 172..860 707..19 3400 99.6 Minus
vir-1-RB 1849 CG31764-RB 256..941 707..22 3385 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12407182..12407468 19..305 1435 100 Plus
2L 23513712 2L 12407548..12407735 302..489 940 100 Plus
2L 23513712 2L 12409456..12409626 489..659 855 100 Plus
2L 23513712 2L 12421647..12421691 663..707 210 97.8 Plus
Blast to na_te.dros performed on 2015-02-10 21:18:44 has no hits.

BO17188.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:47 Download gff for BO17188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31764-PC 15..705 15..706 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:27:49 Download gff for BO17188.3prime
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 173..872 7..706 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:37 Download gff for BO17188.3prime
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 173..872 7..706 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:37 Download gff for BO17188.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12407170..12407466 7..303 98 <- Plus
2L 12407550..12407734 304..488 100 <- Plus
2L 12409456..12409623 489..656 100 <- Plus
2L 12421641..12421690 657..706 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:27:49 Download gff for BO17188.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12407170..12407466 7..303 98 <- Plus
arm_2L 12407550..12407734 304..488 100 <- Plus
arm_2L 12409456..12409623 489..656 100 <- Plus
arm_2L 12421641..12421690 657..706 94   Plus

BO17188.5prime Sequence

677 bp (661 high quality bases) assembled on 2006-10-13

> BO17188.5prime
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGC

BO17188.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31764-PC 705 vir-1-RC 1..661 17..677 3305 100 Plus
CG31764-PA 1296 vir-1-RA 1..661 17..677 3305 100 Plus
CG31764-PB 1296 vir-1-RB 1..661 17..677 3305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-RH 1121 CG31764-RH 232..892 17..677 3305 100 Plus
vir-1-RG 1814 CG31764-RG 232..892 17..677 3305 100 Plus
vir-1-RB 1849 CG31764-RB 243..903 17..677 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12407223..12407468 677..432 1230 100 Minus
2L 23513712 2L 12407548..12407735 435..248 940 100 Minus
2L 23513712 2L 12409456..12409626 248..78 855 100 Minus
2L 23513712 2L 12421641..12421704 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:13:40 has no hits.

BO17188.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:48 Download gff for BO17188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31764-PB 1..661 17..677 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:04 Download gff for BO17188.5prime
Subject Subject Range Query Range Percent Splice Strand
vir-1-RB 243..903 17..677 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:01 Download gff for BO17188.5prime
Subject Subject Range Query Range Percent Splice Strand
vir-1-RB 243..903 17..677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:01 Download gff for BO17188.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12409456..12409623 81..248 100 <- Minus
2L 12407223..12407466 434..677 100 <- Minus
2L 12407550..12407734 249..433 100 <- Minus
2L 12421641..12421704 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:04 Download gff for BO17188.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12407223..12407466 434..677 100 <- Minus
arm_2L 12407550..12407734 249..433 100 <- Minus
arm_2L 12409456..12409623 81..248 100 <- Minus
arm_2L 12421641..12421704 17..80 100   Minus

BO17188.complete Sequence

736 bp assembled on 2006-10-11

GenBank Submission: FJ634053

> BO17188.complete
GAAGTTATCAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGC
TAGCCCTTAGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGAC
GATGCGGAAGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTT
CCATAACTTCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTC
AGCCGAATCCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGAT
CTCTTCCGCCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTC
CGGTGAGGAGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATG
GCAGCGGAGCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGAC
TCGAAGAACGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAA
GGTTGAGATCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGG
TCCGCTTGGTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAG
GGAGTGCACACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCAC
CTCCGCCCCGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATG
ATCGCCGCGAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGAC
ATTGATGAGCCCAAGGTAGCAAGCTTTCTAGACCAT

BO17188.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-RH 705 CG31764-PH 1..702 17..718 3510 100 Plus
vir-1-RC 705 CG31764-PC 1..702 17..718 3510 100 Plus
vir-1-RB 1296 CG31764-PB 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-RH 1121 CG31764-RH 232..933 17..718 3510 100 Plus
vir-1-RC 1048 CG31764-RC 159..860 17..718 3510 100 Plus
vir-1-RB 1849 CG31764-RB 243..941 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12407182..12407468 718..432 1435 100 Minus
2L 23513712 2L 12407548..12407735 435..248 940 100 Minus
2L 23513712 2L 12409456..12409626 248..78 855 100 Minus
2L 23513712 2L 12421641..12421704 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:23:07 has no hits.

BO17188.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:00 Download gff for BO17188.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 1..705 17..722 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:00 Download gff for BO17188.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 138..839 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:15 Download gff for BO17188.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 159..860 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:00 Download gff for BO17188.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 138..851 17..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:55 Download gff for BO17188.complete
Subject Subject Range Query Range Percent Splice Strand
vir-1-RC 159..860 17..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:55 Download gff for BO17188.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12409456..12409623 81..248 100 <- Minus
2L 12421641..12421704 17..80 100   Minus
2L 12407180..12407466 434..720 99 <- Minus
2L 12407550..12407734 249..433 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:15 Download gff for BO17188.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12409456..12409623 81..248 100 <- Minus
arm_2L 12421641..12421704 17..80 100   Minus
arm_2L 12407550..12407734 249..433 100 <- Minus
arm_2L 12407180..12407466 434..720 99 <- Minus

BO17188.pep Sequence

Translation from 16 to 736

> BO17188.pep
MKLLFGLLMTVLALSGVFTLPARNDPQDDAEVIKVPSRPQPESDFHNFRG
VIDTGSGYPFLQPNPSSFNVGIFDSFDDLFRRLRTRLWPVIGRDSGEEGA
SPTGDSDDSSDGSGAGFPFGVRPLIPLDSKNANTTSTIKVVNGHKVEINE
TVYGDSNSVFKVRLVNVRPLESGEEVAQGVHTSGGDFQPALEPSTSAPPK
KFEEFDEEDDDDRREPLEKQPQDNEVRDIDEPKVASFLDH

BO17188.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
vir-1-PH 234 CG31764-PH 1..234 1..234 1226 100 Plus
vir-1-PC 234 CG31764-PC 1..234 1..234 1226 100 Plus
vir-1-PB 431 CG31764-PB 1..233 1..233 1222 100 Plus
vir-1-PA 431 CG31764-PA 1..233 1..233 1222 100 Plus
vir-1-PG 423 CG31764-PG 1..225 1..225 1180 100 Plus