Clone Sequence Records
BO17189.3prime Sequence
640 bp (545 high quality bases) assembled on 2006-10-13
> BO17189.3prime
ATGGTCTAGAAAGCTTGCGTCCAGATATGGAAATATCACTTCGTGGATGA
CATCCCTTCGCGTGTGCCAGGCAAGATGATGAACATGGGGTTTGACCACA
ATGATAAGCTTGCCGGCCTCCTGAAGCGTCCTGATGCCAATGGAGTCGCT
GGTGAAAATCGGTCGCCTAATAAATGGAATCACATCCATATTCTCGTCAA
AGTAACCAAAGTGGCTCGATTGCCACGGAGTAATCACATCGTCGTTGGGT
CCGCCGATCATTACCAACTTATTTAGACGCACCATTCCCATCTTAAAAGA
TGTGGAGTTGGAGGTCTTCTTCTCATTATTGATCAGTGGCAGGAATTCGC
TGTACTTCAGGTAGAGATCCTGCCTCTGCGGATCGTTCCAGTAGCCACCA
ACCGAGGTGTGCTGTCCCACGCGCGAGTAGAACAATTCGAAGGCTGTCTT
GGCCGCCAAGTCGGGAAAGATTAGATGCAAGAAGCTAGTGCCGTATTGCC
CCGCCTGTGGCGAGGATAGAGATATAAAGGTCTTCACATTGTGCTCGGGC
AGACTTTGGATGGCCGCCCGGGGCCAAAGGCCTCCTTGTGAGTATCCCAA
CACAATGATGCCCTCTGGATGCAGTTTGCCCACCTCGTTG
BO17189.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4851-PA | 867 | CG4851-RA | 243..864 | 640..19 | 3035 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-RA | 1191 | CG4851-RA | 317..938 | 640..19 | 3065 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11281133..11281406 | 488..215 | 1370 | 100 | Minus |
2L | 23513712 | 2L | 11281470..11281667 | 216..19 | 990 | 100 | Minus |
2L | 23513712 | 2L | 11280820..11280928 | 597..489 | 515 | 98.2 | Minus |
2L | 23513712 | 2L | 11280715..11280759 | 640..596 | 210 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:37:16 has no hits.
BO17189.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:48 Download gff for
BO17189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4851-PA | 243..867 | 16..640 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:14 Download gff for
BO17189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 317..942 | 15..640 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:38 Download gff for
BO17189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 317..942 | 15..640 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:38 Download gff for
BO17189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11280715..11280758 | 597..640 | 97 | -> | Minus |
2L | 11280821..11280928 | 489..596 | 98 | -> | Minus |
2L | 11281133..11281406 | 215..488 | 100 | -> | Minus |
2L | 11281472..11281671 | 15..214 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:14 Download gff for
BO17189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11281133..11281406 | 215..488 | 100 | -> | Minus |
arm_2L | 11280715..11280758 | 597..640 | 97 | -> | Minus |
arm_2L | 11280821..11280928 | 489..596 | 98 | -> | Minus |
arm_2L | 11281472..11281671 | 15..214 | 99 | | Minus |
BO17189.5prime Sequence
579 bp (574 high quality bases) assembled on 2006-10-13
> BO17189.5prime
GAAGTTATCAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGT
TAACCTGCTCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATA
CTCCATGGAATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGA
AATCGAAGAGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCA
ATGGATGGTACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGG
GATTATCTCAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCT
GGGATACTCACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGC
CCGAGCACAATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGG
CAATACGGCACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAA
GACAGCCTTCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTG
GTGGCTACTGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGC
GAATTCCTGCCACTGATCAATAATGAGAA
BO17189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4851-PA | 867 | CG4851-RA | 1..563 | 17..579 | 2815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-RA | 1191 | CG4851-RA | 75..637 | 17..579 | 2815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11281133..11281301 | 411..579 | 845 | 100 | Plus |
2L | 23513712 | 2L | 11280615..11280759 | 159..303 | 725 | 100 | Plus |
2L | 23513712 | 2L | 11280372..11280515 | 17..160 | 720 | 100 | Plus |
2L | 23513712 | 2L | 11280820..11280928 | 302..410 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:01:39 has no hits.
BO17189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:50 Download gff for
BO17189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4851-PA | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:45 Download gff for
BO17189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 69..637 | 9..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:45 Download gff for
BO17189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 69..637 | 9..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:45 Download gff for
BO17189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11280366..11280515 | 9..160 | 97 | -> | Plus |
2L | 11280617..11280758 | 161..302 | 100 | -> | Plus |
2L | 11280821..11280928 | 303..410 | 100 | -> | Plus |
2L | 11281133..11281301 | 411..579 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:45 Download gff for
BO17189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11281133..11281301 | 411..579 | 100 | | Plus |
arm_2L | 11280617..11280758 | 161..302 | 100 | -> | Plus |
arm_2L | 11280821..11280928 | 303..410 | 100 | -> | Plus |
arm_2L | 11280366..11280515 | 9..160 | 97 | -> | Plus |
BO17189.complete Sequence
898 bp assembled on 2006-10-11
GenBank Submission: FJ634054
> BO17189.complete
GAAGTTATCAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGT
TAACCTGCTCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATA
CTCCATGGAATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGA
AATCGAAGAGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCA
ATGGATGGTACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGG
GATTATCTCAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCT
GGGATACTCACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGC
CCGAGCACAATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGG
CAATACGGCACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAA
GACAGCCTTCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTG
GTGGCTACTGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGC
GAATTCCTGCCACTGATCAATAATGAGAAGAAGACCTCCAACTCCACATC
TTTTAAGATGGGAATGGTGCGTCTAAATAAGTTGGTAATGATCGGCGGAC
CCAACGACGATGTGATTACTCCGTGGCAATCGAGCCACTTTGGTTACTTT
GACGAGAATATGGATGTGATTCCATTTATTAGGCGACCGATTTTCACCAG
CGACTCCATTGGCATCAGGACGCTTCAGGAGGCCGGCAAGCTTATCATTG
TGGTCAAACCCCATGTTCATCATCTTGCCTGGCACACGCGAAGGGATGTC
ATCCACGAAGTGATATTTCCATATCTGGACGCAAGCTTTCTAGACCAT
BO17189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-RA | 867 | CG4851-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-RA | 1191 | CG4851-RA | 75..938 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11281133..11281406 | 411..684 | 1370 | 100 | Plus |
2L | 23513712 | 2L | 11281470..11281667 | 683..880 | 990 | 100 | Plus |
2L | 23513712 | 2L | 11280615..11280759 | 159..303 | 725 | 100 | Plus |
2L | 23513712 | 2L | 11280372..11280515 | 17..160 | 720 | 100 | Plus |
2L | 23513712 | 2L | 11280820..11280928 | 302..410 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:07:10 has no hits.
BO17189.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:10 Download gff for
BO17189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4851-RA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:59 Download gff for
BO17189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 53..926 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:08 Download gff for
BO17189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 75..938 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:11 Download gff for
BO17189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4851-RA | 53..926 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:35 Download gff for
BO17189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppt2-RA | 75..938 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:35 Download gff for
BO17189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11280372..11280515 | 17..160 | 100 | -> | Plus |
2L | 11280617..11280758 | 161..302 | 100 | -> | Plus |
2L | 11280821..11280928 | 303..410 | 100 | -> | Plus |
2L | 11281133..11281406 | 411..684 | 100 | -> | Plus |
2L | 11281472..11281667 | 685..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:08 Download gff for
BO17189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11280617..11280758 | 161..302 | 100 | -> | Plus |
arm_2L | 11280821..11280928 | 303..410 | 100 | -> | Plus |
arm_2L | 11281133..11281406 | 411..684 | 100 | -> | Plus |
arm_2L | 11281472..11281667 | 685..882 | 98 | | Plus |
arm_2L | 11280372..11280515 | 17..160 | 100 | -> | Plus |
BO17189.pep Sequence
Translation from 16 to 898
> BO17189.pep
MRLRLQVLVALLTCSSISVSLAYKPVVILHGILSGAESMASLVREIEEFH
PGTIVYNCDKFNGWYSLENAWRQVDQVRDYLNEVGKLHPEGIIVLGYSQG
GLLARAAIQSLPEHNVKTFISLSSPQAGQYGTSFLHLIFPDLAAKTAFEL
FYSRVGQHTSVGGYWNDPQRQDLYLKYSEFLPLINNEKKTSNSTSFKMGM
VRLNKLVMIGGPNDDVITPWQSSHFGYFDENMDVIPFIRRPIFTSDSIGI
RTLQEAGKLIIVVKPHVHHLAWHTRRDVIHEVIFPYLDASFLDH
BO17189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppt2-PA | 288 | CG4851-PA | 1..288 | 1..288 | 1511 | 100 | Plus |