Clone BO17189 Report

Search the DGRC for BO17189

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptPpt2-RA
Protein status:BO17189.pep: validated full length
Sequenced Size:898

Clone Sequence Records

BO17189.3prime Sequence

640 bp (545 high quality bases) assembled on 2006-10-13

> BO17189.3prime
ATGGTCTAGAAAGCTTGCGTCCAGATATGGAAATATCACTTCGTGGATGA
CATCCCTTCGCGTGTGCCAGGCAAGATGATGAACATGGGGTTTGACCACA
ATGATAAGCTTGCCGGCCTCCTGAAGCGTCCTGATGCCAATGGAGTCGCT
GGTGAAAATCGGTCGCCTAATAAATGGAATCACATCCATATTCTCGTCAA
AGTAACCAAAGTGGCTCGATTGCCACGGAGTAATCACATCGTCGTTGGGT
CCGCCGATCATTACCAACTTATTTAGACGCACCATTCCCATCTTAAAAGA
TGTGGAGTTGGAGGTCTTCTTCTCATTATTGATCAGTGGCAGGAATTCGC
TGTACTTCAGGTAGAGATCCTGCCTCTGCGGATCGTTCCAGTAGCCACCA
ACCGAGGTGTGCTGTCCCACGCGCGAGTAGAACAATTCGAAGGCTGTCTT
GGCCGCCAAGTCGGGAAAGATTAGATGCAAGAAGCTAGTGCCGTATTGCC
CCGCCTGTGGCGAGGATAGAGATATAAAGGTCTTCACATTGTGCTCGGGC
AGACTTTGGATGGCCGCCCGGGGCCAAAGGCCTCCTTGTGAGTATCCCAA
CACAATGATGCCCTCTGGATGCAGTTTGCCCACCTCGTTG

BO17189.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4851-PA 867 CG4851-RA 243..864 640..19 3035 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-RA 1191 CG4851-RA 317..938 640..19 3065 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11281133..11281406 488..215 1370 100 Minus
2L 23513712 2L 11281470..11281667 216..19 990 100 Minus
2L 23513712 2L 11280820..11280928 597..489 515 98.2 Minus
2L 23513712 2L 11280715..11280759 640..596 210 97.8 Minus
Blast to na_te.dros performed on 2015-02-02 18:37:16 has no hits.

BO17189.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:48 Download gff for BO17189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4851-PA 243..867 16..640 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:14 Download gff for BO17189.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 317..942 15..640 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:38 Download gff for BO17189.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 317..942 15..640 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:38 Download gff for BO17189.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11280715..11280758 597..640 97 -> Minus
2L 11280821..11280928 489..596 98 -> Minus
2L 11281133..11281406 215..488 100 -> Minus
2L 11281472..11281671 15..214 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:14 Download gff for BO17189.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11281133..11281406 215..488 100 -> Minus
arm_2L 11280715..11280758 597..640 97 -> Minus
arm_2L 11280821..11280928 489..596 98 -> Minus
arm_2L 11281472..11281671 15..214 99   Minus

BO17189.5prime Sequence

579 bp (574 high quality bases) assembled on 2006-10-13

> BO17189.5prime
GAAGTTATCAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGT
TAACCTGCTCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATA
CTCCATGGAATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGA
AATCGAAGAGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCA
ATGGATGGTACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGG
GATTATCTCAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCT
GGGATACTCACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGC
CCGAGCACAATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGG
CAATACGGCACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAA
GACAGCCTTCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTG
GTGGCTACTGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGC
GAATTCCTGCCACTGATCAATAATGAGAA

BO17189.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4851-PA 867 CG4851-RA 1..563 17..579 2815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-RA 1191 CG4851-RA 75..637 17..579 2815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11281133..11281301 411..579 845 100 Plus
2L 23513712 2L 11280615..11280759 159..303 725 100 Plus
2L 23513712 2L 11280372..11280515 17..160 720 100 Plus
2L 23513712 2L 11280820..11280928 302..410 545 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:01:39 has no hits.

BO17189.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:50 Download gff for BO17189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4851-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:45 Download gff for BO17189.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 69..637 9..579 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:45 Download gff for BO17189.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 69..637 9..579 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:45 Download gff for BO17189.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11280366..11280515 9..160 97 -> Plus
2L 11280617..11280758 161..302 100 -> Plus
2L 11280821..11280928 303..410 100 -> Plus
2L 11281133..11281301 411..579 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:45 Download gff for BO17189.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11281133..11281301 411..579 100   Plus
arm_2L 11280617..11280758 161..302 100 -> Plus
arm_2L 11280821..11280928 303..410 100 -> Plus
arm_2L 11280366..11280515 9..160 97 -> Plus

BO17189.complete Sequence

898 bp assembled on 2006-10-11

GenBank Submission: FJ634054

> BO17189.complete
GAAGTTATCAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGT
TAACCTGCTCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATA
CTCCATGGAATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGA
AATCGAAGAGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCA
ATGGATGGTACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGG
GATTATCTCAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCT
GGGATACTCACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGC
CCGAGCACAATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGG
CAATACGGCACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAA
GACAGCCTTCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTG
GTGGCTACTGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGC
GAATTCCTGCCACTGATCAATAATGAGAAGAAGACCTCCAACTCCACATC
TTTTAAGATGGGAATGGTGCGTCTAAATAAGTTGGTAATGATCGGCGGAC
CCAACGACGATGTGATTACTCCGTGGCAATCGAGCCACTTTGGTTACTTT
GACGAGAATATGGATGTGATTCCATTTATTAGGCGACCGATTTTCACCAG
CGACTCCATTGGCATCAGGACGCTTCAGGAGGCCGGCAAGCTTATCATTG
TGGTCAAACCCCATGTTCATCATCTTGCCTGGCACACGCGAAGGGATGTC
ATCCACGAAGTGATATTTCCATATCTGGACGCAAGCTTTCTAGACCAT

BO17189.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-RA 867 CG4851-PA 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-RA 1191 CG4851-RA 75..938 17..880 4320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11281133..11281406 411..684 1370 100 Plus
2L 23513712 2L 11281470..11281667 683..880 990 100 Plus
2L 23513712 2L 11280615..11280759 159..303 725 100 Plus
2L 23513712 2L 11280372..11280515 17..160 720 100 Plus
2L 23513712 2L 11280820..11280928 302..410 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:07:10 has no hits.

BO17189.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:10 Download gff for BO17189.complete
Subject Subject Range Query Range Percent Splice Strand
CG4851-RA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:59 Download gff for BO17189.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 53..926 9..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:08 Download gff for BO17189.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 75..938 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:11 Download gff for BO17189.complete
Subject Subject Range Query Range Percent Splice Strand
CG4851-RA 53..926 9..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:35 Download gff for BO17189.complete
Subject Subject Range Query Range Percent Splice Strand
Ppt2-RA 75..938 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:35 Download gff for BO17189.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11280372..11280515 17..160 100 -> Plus
2L 11280617..11280758 161..302 100 -> Plus
2L 11280821..11280928 303..410 100 -> Plus
2L 11281133..11281406 411..684 100 -> Plus
2L 11281472..11281667 685..882 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:08 Download gff for BO17189.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11280617..11280758 161..302 100 -> Plus
arm_2L 11280821..11280928 303..410 100 -> Plus
arm_2L 11281133..11281406 411..684 100 -> Plus
arm_2L 11281472..11281667 685..882 98   Plus
arm_2L 11280372..11280515 17..160 100 -> Plus

BO17189.pep Sequence

Translation from 16 to 898

> BO17189.pep
MRLRLQVLVALLTCSSISVSLAYKPVVILHGILSGAESMASLVREIEEFH
PGTIVYNCDKFNGWYSLENAWRQVDQVRDYLNEVGKLHPEGIIVLGYSQG
GLLARAAIQSLPEHNVKTFISLSSPQAGQYGTSFLHLIFPDLAAKTAFEL
FYSRVGQHTSVGGYWNDPQRQDLYLKYSEFLPLINNEKKTSNSTSFKMGM
VRLNKLVMIGGPNDDVITPWQSSHFGYFDENMDVIPFIRRPIFTSDSIGI
RTLQEAGKLIIVVKPHVHHLAWHTRRDVIHEVIFPYLDASFLDH

BO17189.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ppt2-PA 288 CG4851-PA 1..288 1..288 1511 100 Plus