Clone Sequence Records
BO17190.3prime Sequence
709 bp (517 high quality bases) assembled on 2006-10-13
> BO17190.3prime
ATGGTCTAGAAAGCTTGCCGGCTGCTGCATGACAGTGCGGATATATTTGA
GGACGTCCGGATTGGACAGGATGTGCAAGTGGTCCACGTTCTGGAGAGCG
AGCGTGTTTATAGGCGCTTTAGAATAGCCCGCCCAATATTTGCAGGCTCG
CAGAGAACGCTGGTTAACGGTGCCGTCGCCGAGACCCATTATCAACTTGG
GCGTTTCCCCACTAATGTCCGATTTCTTGTACTGCAGTCTCTCGACCGTG
TCGATGCCTTCGCCATAGAGACAGTGCAGTTCCACATTCGGTGGATCGAA
GTTTCGGTTGTACCGAATCGTGTCCTTGCGCATTTCCCAGCCCGTCATGT
AGTCGAGGTCTTTGAAGAACTCTTCCAGCTGTGCCATCGTATAGTTTCTG
CTTGGAGTCATGGCGAGCACCTCGGTTGGCTTCCAAAACAGTGGCGAGGG
CAGCAACCAGGCCGTGGATGGGTGTGTTATCTGTTCCGCCTTGAGGATCT
TGGCACTCAGGGCGAACGAGTCGAGATCATCGCCCATGGCAAACACTTTC
ACAGCCTTAAAACTTCCCGCCCAAACTCCCGCCAGGCTGATCTTGCGCTT
CACGTATTTCGCCTTCCATTGGAGGGTTTGCTCCTGCAAGAAAACCAGGG
TCATGAGACTGCCCATGCTGTGCGAGATGAAGGTCACAGCCGACTGATTG
TTGGCCTCT
BO17190.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-PA | 1266 | CG31683-RA | 574..1263 | 708..19 | 3425 | 99.8 | Minus |
CG18858-PA | 1266 | CG18858-RA | 574..1263 | 708..19 | 3400 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-RB | 1823 | CG31683-RB | 1010..1699 | 708..19 | 3435 | 99.9 | Minus |
CG31683-RA | 2031 | CG31683-RA | 1010..1699 | 708..19 | 3435 | 99.9 | Minus |
CG18858-RB | 2029 | CG18858-RB | 1004..1693 | 708..19 | 3420 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20448351..20448820 | 239..708 | 2335 | 99.8 | Plus |
2L | 23513712 | 2L | 20457468..20457937 | 239..708 | 2320 | 99.6 | Plus |
2L | 23513712 | 2L | 20448066..20448287 | 19..240 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 20457183..20457404 | 19..240 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:03:08 has no hits.
BO17190.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:50 Download gff for
BO17190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-PA | 572..1266 | 15..709 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:23 Download gff for
BO17190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 1008..1702 | 15..709 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:31 Download gff for
BO17190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 1008..1702 | 15..709 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:31 Download gff for
BO17190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20448063..20448285 | 15..238 | 99 | <- | Plus |
2L | 20448351..20448820 | 239..709 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:23 Download gff for
BO17190.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20448063..20448285 | 15..238 | 99 | <- | Plus |
arm_2L | 20448351..20448820 | 239..709 | 99 | | Plus |
BO17190.5prime Sequence
717 bp (655 high quality bases) assembled on 2006-10-13
> BO17190.5prime
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATTGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGC
BO17190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-PA | 1266 | CG31683-RA | 1..701 | 17..717 | 3505 | 100 | Plus |
CG18858-PA | 1266 | CG18858-RA | 1..701 | 17..717 | 3480 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-RB | 1823 | CG31683-RB | 437..1137 | 17..717 | 3505 | 100 | Plus |
CG31683-RA | 2031 | CG31683-RA | 437..1137 | 17..717 | 3505 | 100 | Plus |
CG18858-RB | 2029 | CG18858-RB | 431..1131 | 17..717 | 3490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20448937..20449314 | 541..164 | 1875 | 99.7 | Minus |
2L | 23513712 | 2L | 20458054..20458431 | 541..164 | 1860 | 99.5 | Minus |
2L | 23513712 | 2L | 20457810..20457994 | 717..533 | 910 | 99.5 | Minus |
2L | 23513712 | 2L | 20448693..20448873 | 717..537 | 905 | 100 | Minus |
2L | 23513712 | 2L | 20449381..20449528 | 164..17 | 740 | 100 | Minus |
2L | 23513712 | 2L | 20458498..20458645 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:02:59 has no hits.
BO17190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:51 Download gff for
BO17190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-PA | 1..701 | 17..717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:23 Download gff for
BO17190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 437..1137 | 17..717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:51 Download gff for
BO17190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 437..1137 | 17..717 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:51 Download gff for
BO17190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20448693..20448873 | 537..717 | 100 | <- | Minus |
2L | 20448942..20449313 | 165..536 | 100 | <- | Minus |
2L | 20449381..20449528 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:23 Download gff for
BO17190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20448693..20448873 | 537..717 | 100 | <- | Minus |
arm_2L | 20448942..20449313 | 165..536 | 100 | <- | Minus |
arm_2L | 20449381..20449528 | 17..164 | 100 | | Minus |
BO17190.complete Sequence
1297 bp assembled on 2006-10-11
GenBank Submission: FJ638752
> BO17190.complete
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATTGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAGGCTGTGAA
AGTGTTTGCCATGGGCGATGATCTCGACTCGTTCGCCCTGAGTGCCAAGA
TCCTCAAGGCGGAACAGATAACACACCCATCCACGGCCTGGTTGCTGCCC
TCGCCACTGTTTTGGAAGCCAACCGAGGTGCTCGCCATGACTCCAAGCAG
AAACTATACGATGGCACAGCTGGAAGAGTTCTTCAAAGACCTCGACTACA
TGACGGGCTGGGAAATGCGCAAGGACACGATTCGGTACAACCGAAACTTC
GATCCACCGAATGTGGAACTGCACTGTCTCTATGGCGAAGGCATCGACAC
GGTCGAGAGACTGCAGTACAAGAAATCGGACATTAGTGGGGAAACGCCCA
AGTTGATAATGGGTCTCGGCGACGGCACCGTTAACCAGCGTTCTCTGCGA
GCCTGCAAATATTGGGCGGGCTATTCTAAAGCGCCTATAAACACGCTCGC
TCTCCAGAACGTGGACCACTTGCACATCCTGTCCAATCCGGACGTCCTCA
AATATATCCGCACTGTCATGCAGCAGCCGGCAAGCTTTCTAGACCAT
BO17190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-RB | 1266 | CG31683-PB | 1..1263 | 17..1279 | 6315 | 100 | Plus |
CG31683-RA | 1266 | CG31683-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
CG18858-RB | 1266 | CG18858-PB | 1..1263 | 17..1279 | 6285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-RB | 1823 | CG31683-RB | 437..1699 | 17..1279 | 6315 | 100 | Plus |
CG31683-RA | 2031 | CG31683-RA | 437..1699 | 17..1279 | 6315 | 100 | Plus |
CG18858-RB | 2029 | CG18858-RB | 431..1693 | 17..1279 | 6285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20448351..20448873 | 1059..537 | 2615 | 100 | Minus |
2L | 23513712 | 2L | 20457468..20457994 | 1059..533 | 2605 | 99.6 | Minus |
2L | 23513712 | 2L | 20448937..20449314 | 541..164 | 1875 | 99.7 | Minus |
2L | 23513712 | 2L | 20458054..20458431 | 541..164 | 1860 | 99.5 | Minus |
2L | 23513712 | 2L | 20448066..20448287 | 1279..1058 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 20457183..20457404 | 1279..1058 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 20449381..20449528 | 164..17 | 740 | 100 | Minus |
2L | 23513712 | 2L | 20458498..20458645 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:56:12 has no hits.
BO17190.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:46 Download gff for
BO17190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 1..1266 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:03 Download gff for
BO17190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 446..1711 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:47:37 Download gff for
BO17190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 437..1699 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:46 Download gff for
BO17190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 446..1711 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:32 Download gff for
BO17190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31683-RA | 437..1699 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:32 Download gff for
BO17190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20448064..20448285 | 1060..1281 | 99 | <- | Minus |
2L | 20448351..20448873 | 537..1059 | 100 | <- | Minus |
2L | 20448942..20449313 | 165..536 | 100 | <- | Minus |
2L | 20449381..20449528 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:47:37 Download gff for
BO17190.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20448064..20448285 | 1060..1281 | 99 | <- | Minus |
arm_2L | 20448351..20448873 | 537..1059 | 100 | <- | Minus |
arm_2L | 20448942..20449313 | 165..536 | 100 | <- | Minus |
arm_2L | 20449381..20449528 | 17..164 | 100 | | Minus |
BO17190.pep Sequence
Translation from 16 to 1297
> BO17190.pep
MRLKSGVLSLLLLTTFLALGECFWPFSKWHGRNDNPSAPPEPKLSPVIFV
PGDGGSQMDARLNKPNSPYLICQKTHDWYNLWLDLEQLVIPIVYCWIDNV
KLYYDKVTRTTHNTPGVETRIPGWGNPEVVEWIDPTKNSAGAYFKDIANE
LVKLGYIRKQNIHGAPYDFRKAPNENQQFFIDLKQLVEDSYEANNQSAVT
FISHSMGSLMTLVFLQEQTLQWKAKYVKRMISLAGVWAGSFKAVKVFAMG
DDLDSFALSAKILKAEQITHPSTAWLLPSPLFWKPTEVLAMTPSRNYTMA
QLEEFFKDLDYMTGWEMRKDTIRYNRNFDPPNVELHCLYGEGIDTVERLQ
YKKSDISGETPKLIMGLGDGTVNQRSLRACKYWAGYSKAPINTLALQNVD
HLHILSNPDVLKYIRTVMQQPASFLDH
BO17190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31683-PB | 421 | CG31683-PB | 1..421 | 1..421 | 2266 | 100 | Plus |
CG31683-PA | 421 | CG31683-PA | 1..421 | 1..421 | 2266 | 100 | Plus |
CG18858-PB | 421 | CG18858-PB | 1..421 | 1..421 | 2259 | 99.5 | Plus |
CG18858-PA | 421 | CG18858-PA | 1..421 | 1..421 | 2259 | 99.5 | Plus |