Clone BO17190 Report

Search the DGRC for BO17190

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG31683-RA
Protein status:BO17190.pep: validated full length
Sequenced Size:1297

Clone Sequence Records

BO17190.3prime Sequence

709 bp (517 high quality bases) assembled on 2006-10-13

> BO17190.3prime
ATGGTCTAGAAAGCTTGCCGGCTGCTGCATGACAGTGCGGATATATTTGA
GGACGTCCGGATTGGACAGGATGTGCAAGTGGTCCACGTTCTGGAGAGCG
AGCGTGTTTATAGGCGCTTTAGAATAGCCCGCCCAATATTTGCAGGCTCG
CAGAGAACGCTGGTTAACGGTGCCGTCGCCGAGACCCATTATCAACTTGG
GCGTTTCCCCACTAATGTCCGATTTCTTGTACTGCAGTCTCTCGACCGTG
TCGATGCCTTCGCCATAGAGACAGTGCAGTTCCACATTCGGTGGATCGAA
GTTTCGGTTGTACCGAATCGTGTCCTTGCGCATTTCCCAGCCCGTCATGT
AGTCGAGGTCTTTGAAGAACTCTTCCAGCTGTGCCATCGTATAGTTTCTG
CTTGGAGTCATGGCGAGCACCTCGGTTGGCTTCCAAAACAGTGGCGAGGG
CAGCAACCAGGCCGTGGATGGGTGTGTTATCTGTTCCGCCTTGAGGATCT
TGGCACTCAGGGCGAACGAGTCGAGATCATCGCCCATGGCAAACACTTTC
ACAGCCTTAAAACTTCCCGCCCAAACTCCCGCCAGGCTGATCTTGCGCTT
CACGTATTTCGCCTTCCATTGGAGGGTTTGCTCCTGCAAGAAAACCAGGG
TCATGAGACTGCCCATGCTGTGCGAGATGAAGGTCACAGCCGACTGATTG
TTGGCCTCT

BO17190.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-PA 1266 CG31683-RA 574..1263 708..19 3425 99.8 Minus
CG18858-PA 1266 CG18858-RA 574..1263 708..19 3400 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-RB 1823 CG31683-RB 1010..1699 708..19 3435 99.9 Minus
CG31683-RA 2031 CG31683-RA 1010..1699 708..19 3435 99.9 Minus
CG18858-RB 2029 CG18858-RB 1004..1693 708..19 3420 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20448351..20448820 239..708 2335 99.8 Plus
2L 23513712 2L 20457468..20457937 239..708 2320 99.6 Plus
2L 23513712 2L 20448066..20448287 19..240 1110 100 Plus
2L 23513712 2L 20457183..20457404 19..240 1110 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:03:08 has no hits.

BO17190.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:50 Download gff for BO17190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-PA 572..1266 15..709 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:23 Download gff for BO17190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 1008..1702 15..709 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:31 Download gff for BO17190.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 1008..1702 15..709 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:31 Download gff for BO17190.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20448063..20448285 15..238 99 <- Plus
2L 20448351..20448820 239..709 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:23 Download gff for BO17190.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20448063..20448285 15..238 99 <- Plus
arm_2L 20448351..20448820 239..709 99   Plus

BO17190.5prime Sequence

717 bp (655 high quality bases) assembled on 2006-10-13

> BO17190.5prime
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATTGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGC

BO17190.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-PA 1266 CG31683-RA 1..701 17..717 3505 100 Plus
CG18858-PA 1266 CG18858-RA 1..701 17..717 3480 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-RB 1823 CG31683-RB 437..1137 17..717 3505 100 Plus
CG31683-RA 2031 CG31683-RA 437..1137 17..717 3505 100 Plus
CG18858-RB 2029 CG18858-RB 431..1131 17..717 3490 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20448937..20449314 541..164 1875 99.7 Minus
2L 23513712 2L 20458054..20458431 541..164 1860 99.5 Minus
2L 23513712 2L 20457810..20457994 717..533 910 99.5 Minus
2L 23513712 2L 20448693..20448873 717..537 905 100 Minus
2L 23513712 2L 20449381..20449528 164..17 740 100 Minus
2L 23513712 2L 20458498..20458645 164..17 740 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:02:59 has no hits.

BO17190.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:51 Download gff for BO17190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-PA 1..701 17..717 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:23 Download gff for BO17190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 437..1137 17..717 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:51 Download gff for BO17190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 437..1137 17..717 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:51 Download gff for BO17190.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20448693..20448873 537..717 100 <- Minus
2L 20448942..20449313 165..536 100 <- Minus
2L 20449381..20449528 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:23 Download gff for BO17190.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20448693..20448873 537..717 100 <- Minus
arm_2L 20448942..20449313 165..536 100 <- Minus
arm_2L 20449381..20449528 17..164 100   Minus

BO17190.complete Sequence

1297 bp assembled on 2006-10-11

GenBank Submission: FJ638752

> BO17190.complete
GAAGTTATCAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCC
TGCTGACCACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAA
TGGCATGGAAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTC
GCCAGTGATATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGC
TAAATAAGCCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGG
TACAACCTGTGGCTGGATCTGGAGCAGTTGGTCATCCCCATTGTCTACTG
TTGGATAGACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCC
ACAACACTCCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAG
GTGGTCGAGTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAA
GGATATAGCCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATA
TTCATGGAGCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAG
TTCTTCATCGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAA
TCAGTCGGCTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCC
TGGTTTTCTTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAG
CGCATGATCAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAGGCTGTGAA
AGTGTTTGCCATGGGCGATGATCTCGACTCGTTCGCCCTGAGTGCCAAGA
TCCTCAAGGCGGAACAGATAACACACCCATCCACGGCCTGGTTGCTGCCC
TCGCCACTGTTTTGGAAGCCAACCGAGGTGCTCGCCATGACTCCAAGCAG
AAACTATACGATGGCACAGCTGGAAGAGTTCTTCAAAGACCTCGACTACA
TGACGGGCTGGGAAATGCGCAAGGACACGATTCGGTACAACCGAAACTTC
GATCCACCGAATGTGGAACTGCACTGTCTCTATGGCGAAGGCATCGACAC
GGTCGAGAGACTGCAGTACAAGAAATCGGACATTAGTGGGGAAACGCCCA
AGTTGATAATGGGTCTCGGCGACGGCACCGTTAACCAGCGTTCTCTGCGA
GCCTGCAAATATTGGGCGGGCTATTCTAAAGCGCCTATAAACACGCTCGC
TCTCCAGAACGTGGACCACTTGCACATCCTGTCCAATCCGGACGTCCTCA
AATATATCCGCACTGTCATGCAGCAGCCGGCAAGCTTTCTAGACCAT

BO17190.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-RB 1266 CG31683-PB 1..1263 17..1279 6315 100 Plus
CG31683-RA 1266 CG31683-PA 1..1263 17..1279 6315 100 Plus
CG18858-RB 1266 CG18858-PB 1..1263 17..1279 6285 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-RB 1823 CG31683-RB 437..1699 17..1279 6315 100 Plus
CG31683-RA 2031 CG31683-RA 437..1699 17..1279 6315 100 Plus
CG18858-RB 2029 CG18858-RB 431..1693 17..1279 6285 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20448351..20448873 1059..537 2615 100 Minus
2L 23513712 2L 20457468..20457994 1059..533 2605 99.6 Minus
2L 23513712 2L 20448937..20449314 541..164 1875 99.7 Minus
2L 23513712 2L 20458054..20458431 541..164 1860 99.5 Minus
2L 23513712 2L 20448066..20448287 1279..1058 1110 100 Minus
2L 23513712 2L 20457183..20457404 1279..1058 1110 100 Minus
2L 23513712 2L 20449381..20449528 164..17 740 100 Minus
2L 23513712 2L 20458498..20458645 164..17 740 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:56:12 has no hits.

BO17190.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:46 Download gff for BO17190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 1..1266 17..1283 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:03 Download gff for BO17190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 446..1711 17..1283 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:47:37 Download gff for BO17190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 437..1699 17..1281 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:46 Download gff for BO17190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 446..1711 17..1283 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:32 Download gff for BO17190.complete
Subject Subject Range Query Range Percent Splice Strand
CG31683-RA 437..1699 17..1281 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:32 Download gff for BO17190.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20448064..20448285 1060..1281 99 <- Minus
2L 20448351..20448873 537..1059 100 <- Minus
2L 20448942..20449313 165..536 100 <- Minus
2L 20449381..20449528 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:47:37 Download gff for BO17190.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20448064..20448285 1060..1281 99 <- Minus
arm_2L 20448351..20448873 537..1059 100 <- Minus
arm_2L 20448942..20449313 165..536 100 <- Minus
arm_2L 20449381..20449528 17..164 100   Minus

BO17190.pep Sequence

Translation from 16 to 1297

> BO17190.pep
MRLKSGVLSLLLLTTFLALGECFWPFSKWHGRNDNPSAPPEPKLSPVIFV
PGDGGSQMDARLNKPNSPYLICQKTHDWYNLWLDLEQLVIPIVYCWIDNV
KLYYDKVTRTTHNTPGVETRIPGWGNPEVVEWIDPTKNSAGAYFKDIANE
LVKLGYIRKQNIHGAPYDFRKAPNENQQFFIDLKQLVEDSYEANNQSAVT
FISHSMGSLMTLVFLQEQTLQWKAKYVKRMISLAGVWAGSFKAVKVFAMG
DDLDSFALSAKILKAEQITHPSTAWLLPSPLFWKPTEVLAMTPSRNYTMA
QLEEFFKDLDYMTGWEMRKDTIRYNRNFDPPNVELHCLYGEGIDTVERLQ
YKKSDISGETPKLIMGLGDGTVNQRSLRACKYWAGYSKAPINTLALQNVD
HLHILSNPDVLKYIRTVMQQPASFLDH

BO17190.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31683-PB 421 CG31683-PB 1..421 1..421 2266 100 Plus
CG31683-PA 421 CG31683-PA 1..421 1..421 2266 100 Plus
CG18858-PB 421 CG18858-PB 1..421 1..421 2259 99.5 Plus
CG18858-PA 421 CG18858-PA 1..421 1..421 2259 99.5 Plus