Clone BO17195 Report

Search the DGRC for BO17195

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:171
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG4673-RA
Protein status:BO17195.pep: validated full length
Sequenced Size:1990

Clone Sequence Records

BO17195.3prime Sequence

769 bp (688 high quality bases) assembled on 2006-10-13

> BO17195.3prime
ATGGTCTAGAAAGCTTGCTCTGGGTAGCGAGCAGATCTCGCAGGACGTTA
GCTCGCCGCGGTTGATGAAGGTGCAGTGGTTGCATGTCCAGGTGTTGGCG
TCCAAGTCCATTGCCTCCGATCCAGAAGCTCCGGCACTGGCCGAAGCTCC
ACCACTGGGATAGCTGGTGGTTCCACCACTGCCGCCGGAACTGGCCTGGA
TAAGCGACTCGAGCAGCTTCCACACATCCACGACCTTGAACTGGGCGGCC
TGGTTGGGGTTCTTGGTGCGAACTGCCTCCAGCAGCGGACCCATGTGCTG
TCGCAGCGGCAGCATGTCCATCTTGTACAGGTAGACCAGCAGGTGGAAAT
CGGAGATGGCCTCCAGGAACTCCTCCTCGCCCCAGGCGGACAGATAGCAG
CTGAGTGCATTGAAATCCTGCAGGTGGCCATCGATGTAGCGGTTCTCGAT
GGGGAATGGCTGGCGCTTGTCGTACTCGGTGAAGGTGTAAATGGGTTGCA
GCGGTGTGGATGCGGGCACGTCCACCAGCAAATACTCCACGGGCAGGGGG
CGAGCCAGCCGCTGCACCTCGTTGCCGTACAGATCCTTCTCCTTATAGAA
AACGTCGGGAACATACTGCTTGTCCGTGGATTCACGCACGTAGCCCAGCT
CGGGCGCATCCTTAGTGGGTATCAGACAATTATCGCGCACCAGAGCCATG
CACTGAGCCGAAACCGCATAGCCTTCCATGTGCACTTGTTTGGTTTTTAT
CTCCTGTTACACAAATGGT

BO17195.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4673-PB 1875 CG4673-RB 1123..1872 769..19 3715 99.8 Minus
CG4673-PA 1959 CG4673-RA 1207..1956 769..19 3715 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
Npl4-RD 2168 CG4673-RD 1179..1928 769..19 3730 99.9 Minus
Npl4-RA 2362 CG4673-RA 1373..2122 769..19 3730 99.9 Minus
Npl4-RB 2208 CG4673-RB 1179..1928 769..19 3730 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25611522..25611939 176..593 2090 100 Plus
3R 32079331 3R 25611293..25611450 19..176 790 100 Plus
3R 32079331 3R 25621879..25622035 591..747 785 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:27:10 has no hits.

BO17195.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:55 Download gff for BO17195.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4673-PA 1207..1959 15..769 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:39:58 Download gff for BO17195.3prime
Subject Subject Range Query Range Percent Splice Strand
Npl4-RB 1179..1932 14..769 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:55 Download gff for BO17195.3prime
Subject Subject Range Query Range Percent Splice Strand
Npl4-RB 1179..1932 14..769 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:55 Download gff for BO17195.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25611289..25611449 14..175 98 <- Plus
3R 25611522..25611937 176..591 100 <- Plus
3R 25621880..25622040 592..753 99 <- Plus
3R 25622103..25622118 754..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:39:58 Download gff for BO17195.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21437011..21437171 14..175 98 <- Plus
arm_3R 21437244..21437659 176..591 100 <- Plus
arm_3R 21447602..21447762 592..753 99 <- Plus
arm_3R 21447825..21447840 754..769 100   Plus

BO17195.5prime Sequence

809 bp (646 high quality bases) assembled on 2006-10-13

> BO17195.5prime
GAAGTTATCAGTCGACATGGCCTGTGCACCACTGCTGCTCGAGCAATTCA
TCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTT
GTGTTATGTAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAA
ACGCATCGAGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCG
TTCAGAATGCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAAC
TTCCTCACAGAGCTGCAGGCAAGTGGCTCCCAGCTGGTGGGGACTTCCTT
GAGGCATGGCGACATGGTCTACTTAAAACAGATGGCTGGCACATCATCGC
GCCGCACTAGCACCACTGTCCTGGACAGTCAGGCGTTCAAGACTAGCACC
ATTAGCAATCCAAACAGCGCTCGTCCATCCTTCAATGTGATCGAAGATGA
CGTGGACCAGGCTCTGAGCAAGGCTGATGGCACCATTAAGCGCGAACGTG
ATAGCAAGCTGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCC
GCACTGGAGCCCTATGATGAGTCCTATCTGAAGGAGCACAATATCAAGCA
CTTGTCCTTCCACTCGTACATACGAAAGCAGACATCCGGCATGGATCAGG
GCAAGTACTTTGTCTTCGACGACATCAATTGCCGCATCAAGCCGGGATGT
CGCGAGCATCCACCATGGCCCAAGGGCATCTGCTCCAAGTGCCAGCCGTC
GGCCATTACGCTGAATCGTCAGACATATCGCCACGTGGACAACGTCATGT
TCGAGAACA

BO17195.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4673-PA 1959 CG4673-RA 1..793 17..809 3965 100 Plus
CG4673-PB 1875 CG4673-RB 19..709 119..809 3455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
Npl4-RA 2362 CG4673-RA 167..959 17..809 3965 100 Plus
Npl4-RD 2168 CG4673-RD 75..765 119..809 3455 100 Plus
Npl4-RB 2208 CG4673-RB 75..765 119..809 3455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25622592..25622890 809..511 1495 100 Minus
3R 32079331 3R 25623172..25623406 352..118 1175 100 Minus
3R 32079331 3R 25622950..25623109 512..353 800 100 Minus
3R 32079331 3R 25623478..25623579 118..17 510 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:15:19 has no hits.

BO17195.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:56 Download gff for BO17195.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4673-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:52:18 Download gff for BO17195.5prime
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 161..958 9..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:41:58 Download gff for BO17195.5prime
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 161..958 9..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:41:58 Download gff for BO17195.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25622952..25623109 353..510 100 <- Minus
3R 25623172..25623405 119..352 100 <- Minus
3R 25623478..25623585 9..118 96   Minus
3R 25622593..25622890 511..808 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:52:18 Download gff for BO17195.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21448315..21448612 511..808 100 <- Minus
arm_3R 21448674..21448831 353..510 100 <- Minus
arm_3R 21448894..21449127 119..352 100 <- Minus
arm_3R 21449200..21449307 9..118 96   Minus

BO17195.complete Sequence

1990 bp assembled on 2006-12-18

GenBank Submission: FJ634055

> BO17195.complete
GAAGTTATCAGTCGACATGGCCTGTGCACCACTGCTGCTCGAGCAATTCA
TCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTT
GTGTTATGTAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAA
ACGCATCGAGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCG
TTCAGAATGCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAAC
TTCCTCACAGAGCTGCAGGCAAGTGGCTCCCAGCTGGTGGGGACTTCCTT
GAGGCATGGCGACATGGTCTACTTAAAACAGATGGCTGGCACATCATCGC
GCCGCACTAGCACCACTGTCCTGGACAGTCAGGCGTTCAAGACTAGCACC
ATTAGCAATCCAAACAGCGCTCGTCCATCCTTCAATGTGATCGAAGATGA
CGTGGACCAGGCTCTGAGCAAGGCTGATGGCACCATTAAGCGCGAACGTG
ATAGCAAGCTGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCC
GCACTGGAGCCCTATGATGAGTCCTATCTGAAGGAGCACAATATCAAGCA
CTTGTCCTTCCACTCGTACATACGAAAGCAGACATCCGGCATGGATCAGG
GCAAGTACTTTGTCTTCGACGACATCAATTGCCGCATCAAGCCGGGATGT
CGCGAGCATCCACCATGGCCCAAGGGCATCTGCTCCAAGTGCCAGCCGTC
GGCCATTACGCTGAATCGTCAGACATATCGCCACGTGGACAACGTCATGT
TCGAGAACACTAAGATCGTGGAGCGCTTCCTCAACTACTGGCGCACCACA
GGACACCAGCGCATGGGATATCTGTATGGGACGTACGAGCAGCACACTGA
TGTTCCGTTGGGCATTCGGGCCAAGGTGGCTGCCATTTATGAGCCGCCAC
AAGAGTCTACCAGGGATTCGATCAATATTCAGCCGGATGAGTTCGCCGAC
GATGTGGATGCCGTAGCCAGTGCGCTGGGACTGAAGAAGATTGGTTGGAT
TTTCACTGATCTCATCACGGACGATGCGAGTATCGGCACTGTCAAACAGA
TCCGTGGCATCGAGTCGCACTTTATTACGGCCCAGGAGTGCATCACAGCT
GGCGAGCTGCAGAATCGACATCCAAATCCGTGTAAATATGCCTCCAATGG
CGTCTTCGGCTCTAAGTTTGTGACCATTTGTGTAACAGGAGATAAAACCA
AACAAGTGCACATGGAAGGCTATGCGGTTTCGGCTCAGTGCATGGCTCTG
GTGCGCGATAATTGTCTGATACCCACTAAGGATGCGCCCGAGCTGGGCTA
CGTGCGTGAATCCACGGACAAGCAGTATGTTCCCGACGTTTTCTATAAGG
AGAAGGATCTGTACGGCAACGAGGTGCAGCGGCTGGCTCGCCCCCTGCCC
GTGGAGTATTTGCTGGTGGACGTGCCCGCATCCACACCGCTGCAACCCAT
TTACACCTTCACCGAGTACGACAAGCGCCAGCCATTCCCCATCGAGAACC
GCTACATCGATGGCCACCTGCAGGATTTCAATGCACTCAGCTGCTATCTG
TCCGCCTGGGGCGAGGAGGAGTTCCTGGAGGCCATCTCCGATTTCCACCT
GCTGGTCTACCTGTACAAGATGGACATGCTGCCGCTGCGACAGCACATGG
GTCCGCTGCTGGAGGCAGTTCGCACCAAGAACCCCAACCAGGCCGCCCAG
TTCAAGGTCGTGGATGTGTGGAAGCTGCTCGAGTCGCTTATCCAGGCCAG
TTCCGGCGGCAGTGGTGGAACCACCAGCTATCCCAGTGGTGGAGCTTCGG
CCAGTGCCGGAGCTTCTGGATCGGAGGCAATGGACTTGGACGCCAACACC
TGGACATGCAACCACTGCACCTTCATCAACCGCGGCGAGCTAACGTCCTG
CGAGATCTGCTCGCTACCCAGAGCAAGCTTTCTAGACCAT

BO17195.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Npl4-RA 1959 CG4673-PA 1..1956 17..1972 9780 100 Plus
Npl4-RD 1875 CG4673-PD 19..1872 119..1972 9270 100 Plus
Npl4-RB 1875 CG4673-PB 19..1872 119..1972 9270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
Npl4-RA 2362 CG4673-RA 167..2122 17..1972 9780 100 Plus
Npl4-RD 2168 CG4673-RD 75..1928 119..1972 9270 100 Plus
Npl4-RB 2208 CG4673-RB 75..1928 119..1972 9270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25622355..25622890 1046..511 2650 99.6 Minus
3R 32079331 3R 25611522..25611939 1815..1398 2090 100 Minus
3R 32079331 3R 25623172..25623406 352..118 1175 100 Minus
3R 32079331 3R 25622102..25622303 1239..1038 1010 100 Minus
3R 32079331 3R 25621879..25622044 1400..1235 830 100 Minus
3R 32079331 3R 25622950..25623109 512..353 800 100 Minus
3R 32079331 3R 25611293..25611450 1972..1815 790 100 Minus
3R 32079331 3R 25623478..25623579 118..17 510 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:02:10 has no hits.

BO17195.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:07 Download gff for BO17195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 1..1959 17..1976 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:26 Download gff for BO17195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 159..2114 17..1974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:28 Download gff for BO17195.complete
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 167..2122 17..1974 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:07 Download gff for BO17195.complete
Subject Subject Range Query Range Percent Splice Strand
CG4673-RA 153..2118 9..1977 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:02 Download gff for BO17195.complete
Subject Subject Range Query Range Percent Splice Strand
Npl4-RA 167..2122 17..1974 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:02 Download gff for BO17195.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25621880..25622040 1239..1399 100 <- Minus
3R 25622103..25622301 1040..1238 100 <- Minus
3R 25611291..25611449 1816..1974 98 <- Minus
3R 25611522..25611937 1400..1815 100 <- Minus
3R 25622362..25622890 511..1039 100 <- Minus
3R 25622952..25623109 353..510 100 <- Minus
3R 25623172..25623405 119..352 100 <- Minus
3R 25623478..25623579 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:28 Download gff for BO17195.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21437013..21437171 1816..1974 98 <- Minus
arm_3R 21437244..21437659 1400..1815 100 <- Minus
arm_3R 21447602..21447762 1239..1399 100 <- Minus
arm_3R 21447825..21448023 1040..1238 100 <- Minus
arm_3R 21448084..21448612 511..1039 100 <- Minus
arm_3R 21448674..21448831 353..510 100 <- Minus
arm_3R 21448894..21449127 119..352 100 <- Minus
arm_3R 21449200..21449301 17..118 100   Minus

BO17195.pep Sequence

Translation from 16 to 1990

> BO17195.pep
MACAPLLLEQFIYKKRNFAYAFVRHRLFVLCKQSLIRVQSAEGIKRIEIS
PKSNLKHLYDSVQNALKVDGFGLFKERNFLTELQASGSQLVGTSLRHGDM
VYLKQMAGTSSRRTSTTVLDSQAFKTSTISNPNSARPSFNVIEDDVDQAL
SKADGTIKRERDSKLCHHNANGRCVHCSALEPYDESYLKEHNIKHLSFHS
YIRKQTSGMDQGKYFVFDDINCRIKPGCREHPPWPKGICSKCQPSAITLN
RQTYRHVDNVMFENTKIVERFLNYWRTTGHQRMGYLYGTYEQHTDVPLGI
RAKVAAIYEPPQESTRDSINIQPDEFADDVDAVASALGLKKIGWIFTDLI
TDDASIGTVKQIRGIESHFITAQECITAGELQNRHPNPCKYASNGVFGSK
FVTICVTGDKTKQVHMEGYAVSAQCMALVRDNCLIPTKDAPELGYVREST
DKQYVPDVFYKEKDLYGNEVQRLARPLPVEYLLVDVPASTPLQPIYTFTE
YDKRQPFPIENRYIDGHLQDFNALSCYLSAWGEEEFLEAISDFHLLVYLY
KMDMLPLRQHMGPLLEAVRTKNPNQAAQFKVVDVWKLLESLIQASSGGSG
GTTSYPSGGASASAGASGSEAMDLDANTWTCNHCTFINRGELTSCEICSL
PRASFLDH

BO17195.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Npl4-PA 652 CG4673-PA 1..652 1..652 3459 100 Plus
Npl4-PD 624 CG4673-PD 7..624 35..652 3280 100 Plus
Npl4-PB 624 CG4673-PB 7..624 35..652 3280 100 Plus