Clone Sequence Records
BO17195.3prime Sequence
769 bp (688 high quality bases) assembled on 2006-10-13
> BO17195.3prime
ATGGTCTAGAAAGCTTGCTCTGGGTAGCGAGCAGATCTCGCAGGACGTTA
GCTCGCCGCGGTTGATGAAGGTGCAGTGGTTGCATGTCCAGGTGTTGGCG
TCCAAGTCCATTGCCTCCGATCCAGAAGCTCCGGCACTGGCCGAAGCTCC
ACCACTGGGATAGCTGGTGGTTCCACCACTGCCGCCGGAACTGGCCTGGA
TAAGCGACTCGAGCAGCTTCCACACATCCACGACCTTGAACTGGGCGGCC
TGGTTGGGGTTCTTGGTGCGAACTGCCTCCAGCAGCGGACCCATGTGCTG
TCGCAGCGGCAGCATGTCCATCTTGTACAGGTAGACCAGCAGGTGGAAAT
CGGAGATGGCCTCCAGGAACTCCTCCTCGCCCCAGGCGGACAGATAGCAG
CTGAGTGCATTGAAATCCTGCAGGTGGCCATCGATGTAGCGGTTCTCGAT
GGGGAATGGCTGGCGCTTGTCGTACTCGGTGAAGGTGTAAATGGGTTGCA
GCGGTGTGGATGCGGGCACGTCCACCAGCAAATACTCCACGGGCAGGGGG
CGAGCCAGCCGCTGCACCTCGTTGCCGTACAGATCCTTCTCCTTATAGAA
AACGTCGGGAACATACTGCTTGTCCGTGGATTCACGCACGTAGCCCAGCT
CGGGCGCATCCTTAGTGGGTATCAGACAATTATCGCGCACCAGAGCCATG
CACTGAGCCGAAACCGCATAGCCTTCCATGTGCACTTGTTTGGTTTTTAT
CTCCTGTTACACAAATGGT
BO17195.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4673-PB | 1875 | CG4673-RB | 1123..1872 | 769..19 | 3715 | 99.8 | Minus |
CG4673-PA | 1959 | CG4673-RA | 1207..1956 | 769..19 | 3715 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npl4-RD | 2168 | CG4673-RD | 1179..1928 | 769..19 | 3730 | 99.9 | Minus |
Npl4-RA | 2362 | CG4673-RA | 1373..2122 | 769..19 | 3730 | 99.9 | Minus |
Npl4-RB | 2208 | CG4673-RB | 1179..1928 | 769..19 | 3730 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25611522..25611939 | 176..593 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 25611293..25611450 | 19..176 | 790 | 100 | Plus |
3R | 32079331 | 3R | 25621879..25622035 | 591..747 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:27:10 has no hits.
BO17195.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:55 Download gff for
BO17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4673-PA | 1207..1959 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:39:58 Download gff for
BO17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npl4-RB | 1179..1932 | 14..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:55 Download gff for
BO17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npl4-RB | 1179..1932 | 14..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:55 Download gff for
BO17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25611289..25611449 | 14..175 | 98 | <- | Plus |
3R | 25611522..25611937 | 176..591 | 100 | <- | Plus |
3R | 25621880..25622040 | 592..753 | 99 | <- | Plus |
3R | 25622103..25622118 | 754..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:39:58 Download gff for
BO17195.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21437011..21437171 | 14..175 | 98 | <- | Plus |
arm_3R | 21437244..21437659 | 176..591 | 100 | <- | Plus |
arm_3R | 21447602..21447762 | 592..753 | 99 | <- | Plus |
arm_3R | 21447825..21447840 | 754..769 | 100 | | Plus |
BO17195.5prime Sequence
809 bp (646 high quality bases) assembled on 2006-10-13
> BO17195.5prime
GAAGTTATCAGTCGACATGGCCTGTGCACCACTGCTGCTCGAGCAATTCA
TCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTT
GTGTTATGTAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAA
ACGCATCGAGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCG
TTCAGAATGCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAAC
TTCCTCACAGAGCTGCAGGCAAGTGGCTCCCAGCTGGTGGGGACTTCCTT
GAGGCATGGCGACATGGTCTACTTAAAACAGATGGCTGGCACATCATCGC
GCCGCACTAGCACCACTGTCCTGGACAGTCAGGCGTTCAAGACTAGCACC
ATTAGCAATCCAAACAGCGCTCGTCCATCCTTCAATGTGATCGAAGATGA
CGTGGACCAGGCTCTGAGCAAGGCTGATGGCACCATTAAGCGCGAACGTG
ATAGCAAGCTGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCC
GCACTGGAGCCCTATGATGAGTCCTATCTGAAGGAGCACAATATCAAGCA
CTTGTCCTTCCACTCGTACATACGAAAGCAGACATCCGGCATGGATCAGG
GCAAGTACTTTGTCTTCGACGACATCAATTGCCGCATCAAGCCGGGATGT
CGCGAGCATCCACCATGGCCCAAGGGCATCTGCTCCAAGTGCCAGCCGTC
GGCCATTACGCTGAATCGTCAGACATATCGCCACGTGGACAACGTCATGT
TCGAGAACA
BO17195.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4673-PA | 1959 | CG4673-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
CG4673-PB | 1875 | CG4673-RB | 19..709 | 119..809 | 3455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npl4-RA | 2362 | CG4673-RA | 167..959 | 17..809 | 3965 | 100 | Plus |
Npl4-RD | 2168 | CG4673-RD | 75..765 | 119..809 | 3455 | 100 | Plus |
Npl4-RB | 2208 | CG4673-RB | 75..765 | 119..809 | 3455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25622592..25622890 | 809..511 | 1495 | 100 | Minus |
3R | 32079331 | 3R | 25623172..25623406 | 352..118 | 1175 | 100 | Minus |
3R | 32079331 | 3R | 25622950..25623109 | 512..353 | 800 | 100 | Minus |
3R | 32079331 | 3R | 25623478..25623579 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:15:19 has no hits.
BO17195.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:56 Download gff for
BO17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4673-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:52:18 Download gff for
BO17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npl4-RA | 161..958 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:41:58 Download gff for
BO17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npl4-RA | 161..958 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:41:58 Download gff for
BO17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25622952..25623109 | 353..510 | 100 | <- | Minus |
3R | 25623172..25623405 | 119..352 | 100 | <- | Minus |
3R | 25623478..25623585 | 9..118 | 96 | | Minus |
3R | 25622593..25622890 | 511..808 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:52:18 Download gff for
BO17195.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21448315..21448612 | 511..808 | 100 | <- | Minus |
arm_3R | 21448674..21448831 | 353..510 | 100 | <- | Minus |
arm_3R | 21448894..21449127 | 119..352 | 100 | <- | Minus |
arm_3R | 21449200..21449307 | 9..118 | 96 | | Minus |
BO17195.complete Sequence
1990 bp assembled on 2006-12-18
GenBank Submission: FJ634055
> BO17195.complete
GAAGTTATCAGTCGACATGGCCTGTGCACCACTGCTGCTCGAGCAATTCA
TCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTT
GTGTTATGTAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAA
ACGCATCGAGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCG
TTCAGAATGCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAAC
TTCCTCACAGAGCTGCAGGCAAGTGGCTCCCAGCTGGTGGGGACTTCCTT
GAGGCATGGCGACATGGTCTACTTAAAACAGATGGCTGGCACATCATCGC
GCCGCACTAGCACCACTGTCCTGGACAGTCAGGCGTTCAAGACTAGCACC
ATTAGCAATCCAAACAGCGCTCGTCCATCCTTCAATGTGATCGAAGATGA
CGTGGACCAGGCTCTGAGCAAGGCTGATGGCACCATTAAGCGCGAACGTG
ATAGCAAGCTGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCC
GCACTGGAGCCCTATGATGAGTCCTATCTGAAGGAGCACAATATCAAGCA
CTTGTCCTTCCACTCGTACATACGAAAGCAGACATCCGGCATGGATCAGG
GCAAGTACTTTGTCTTCGACGACATCAATTGCCGCATCAAGCCGGGATGT
CGCGAGCATCCACCATGGCCCAAGGGCATCTGCTCCAAGTGCCAGCCGTC
GGCCATTACGCTGAATCGTCAGACATATCGCCACGTGGACAACGTCATGT
TCGAGAACACTAAGATCGTGGAGCGCTTCCTCAACTACTGGCGCACCACA
GGACACCAGCGCATGGGATATCTGTATGGGACGTACGAGCAGCACACTGA
TGTTCCGTTGGGCATTCGGGCCAAGGTGGCTGCCATTTATGAGCCGCCAC
AAGAGTCTACCAGGGATTCGATCAATATTCAGCCGGATGAGTTCGCCGAC
GATGTGGATGCCGTAGCCAGTGCGCTGGGACTGAAGAAGATTGGTTGGAT
TTTCACTGATCTCATCACGGACGATGCGAGTATCGGCACTGTCAAACAGA
TCCGTGGCATCGAGTCGCACTTTATTACGGCCCAGGAGTGCATCACAGCT
GGCGAGCTGCAGAATCGACATCCAAATCCGTGTAAATATGCCTCCAATGG
CGTCTTCGGCTCTAAGTTTGTGACCATTTGTGTAACAGGAGATAAAACCA
AACAAGTGCACATGGAAGGCTATGCGGTTTCGGCTCAGTGCATGGCTCTG
GTGCGCGATAATTGTCTGATACCCACTAAGGATGCGCCCGAGCTGGGCTA
CGTGCGTGAATCCACGGACAAGCAGTATGTTCCCGACGTTTTCTATAAGG
AGAAGGATCTGTACGGCAACGAGGTGCAGCGGCTGGCTCGCCCCCTGCCC
GTGGAGTATTTGCTGGTGGACGTGCCCGCATCCACACCGCTGCAACCCAT
TTACACCTTCACCGAGTACGACAAGCGCCAGCCATTCCCCATCGAGAACC
GCTACATCGATGGCCACCTGCAGGATTTCAATGCACTCAGCTGCTATCTG
TCCGCCTGGGGCGAGGAGGAGTTCCTGGAGGCCATCTCCGATTTCCACCT
GCTGGTCTACCTGTACAAGATGGACATGCTGCCGCTGCGACAGCACATGG
GTCCGCTGCTGGAGGCAGTTCGCACCAAGAACCCCAACCAGGCCGCCCAG
TTCAAGGTCGTGGATGTGTGGAAGCTGCTCGAGTCGCTTATCCAGGCCAG
TTCCGGCGGCAGTGGTGGAACCACCAGCTATCCCAGTGGTGGAGCTTCGG
CCAGTGCCGGAGCTTCTGGATCGGAGGCAATGGACTTGGACGCCAACACC
TGGACATGCAACCACTGCACCTTCATCAACCGCGGCGAGCTAACGTCCTG
CGAGATCTGCTCGCTACCCAGAGCAAGCTTTCTAGACCAT
BO17195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npl4-RA | 1959 | CG4673-PA | 1..1956 | 17..1972 | 9780 | 100 | Plus |
Npl4-RD | 1875 | CG4673-PD | 19..1872 | 119..1972 | 9270 | 100 | Plus |
Npl4-RB | 1875 | CG4673-PB | 19..1872 | 119..1972 | 9270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npl4-RA | 2362 | CG4673-RA | 167..2122 | 17..1972 | 9780 | 100 | Plus |
Npl4-RD | 2168 | CG4673-RD | 75..1928 | 119..1972 | 9270 | 100 | Plus |
Npl4-RB | 2208 | CG4673-RB | 75..1928 | 119..1972 | 9270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25622355..25622890 | 1046..511 | 2650 | 99.6 | Minus |
3R | 32079331 | 3R | 25611522..25611939 | 1815..1398 | 2090 | 100 | Minus |
3R | 32079331 | 3R | 25623172..25623406 | 352..118 | 1175 | 100 | Minus |
3R | 32079331 | 3R | 25622102..25622303 | 1239..1038 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 25621879..25622044 | 1400..1235 | 830 | 100 | Minus |
3R | 32079331 | 3R | 25622950..25623109 | 512..353 | 800 | 100 | Minus |
3R | 32079331 | 3R | 25611293..25611450 | 1972..1815 | 790 | 100 | Minus |
3R | 32079331 | 3R | 25623478..25623579 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:10 has no hits.
BO17195.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:07 Download gff for
BO17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4673-RA | 1..1959 | 17..1976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:26 Download gff for
BO17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4673-RA | 159..2114 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:28 Download gff for
BO17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npl4-RA | 167..2122 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:07 Download gff for
BO17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4673-RA | 153..2118 | 9..1977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:02 Download gff for
BO17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npl4-RA | 167..2122 | 17..1974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:02 Download gff for
BO17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25621880..25622040 | 1239..1399 | 100 | <- | Minus |
3R | 25622103..25622301 | 1040..1238 | 100 | <- | Minus |
3R | 25611291..25611449 | 1816..1974 | 98 | <- | Minus |
3R | 25611522..25611937 | 1400..1815 | 100 | <- | Minus |
3R | 25622362..25622890 | 511..1039 | 100 | <- | Minus |
3R | 25622952..25623109 | 353..510 | 100 | <- | Minus |
3R | 25623172..25623405 | 119..352 | 100 | <- | Minus |
3R | 25623478..25623579 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:28 Download gff for
BO17195.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21437013..21437171 | 1816..1974 | 98 | <- | Minus |
arm_3R | 21437244..21437659 | 1400..1815 | 100 | <- | Minus |
arm_3R | 21447602..21447762 | 1239..1399 | 100 | <- | Minus |
arm_3R | 21447825..21448023 | 1040..1238 | 100 | <- | Minus |
arm_3R | 21448084..21448612 | 511..1039 | 100 | <- | Minus |
arm_3R | 21448674..21448831 | 353..510 | 100 | <- | Minus |
arm_3R | 21448894..21449127 | 119..352 | 100 | <- | Minus |
arm_3R | 21449200..21449301 | 17..118 | 100 | | Minus |
BO17195.pep Sequence
Translation from 16 to 1990
> BO17195.pep
MACAPLLLEQFIYKKRNFAYAFVRHRLFVLCKQSLIRVQSAEGIKRIEIS
PKSNLKHLYDSVQNALKVDGFGLFKERNFLTELQASGSQLVGTSLRHGDM
VYLKQMAGTSSRRTSTTVLDSQAFKTSTISNPNSARPSFNVIEDDVDQAL
SKADGTIKRERDSKLCHHNANGRCVHCSALEPYDESYLKEHNIKHLSFHS
YIRKQTSGMDQGKYFVFDDINCRIKPGCREHPPWPKGICSKCQPSAITLN
RQTYRHVDNVMFENTKIVERFLNYWRTTGHQRMGYLYGTYEQHTDVPLGI
RAKVAAIYEPPQESTRDSINIQPDEFADDVDAVASALGLKKIGWIFTDLI
TDDASIGTVKQIRGIESHFITAQECITAGELQNRHPNPCKYASNGVFGSK
FVTICVTGDKTKQVHMEGYAVSAQCMALVRDNCLIPTKDAPELGYVREST
DKQYVPDVFYKEKDLYGNEVQRLARPLPVEYLLVDVPASTPLQPIYTFTE
YDKRQPFPIENRYIDGHLQDFNALSCYLSAWGEEEFLEAISDFHLLVYLY
KMDMLPLRQHMGPLLEAVRTKNPNQAAQFKVVDVWKLLESLIQASSGGSG
GTTSYPSGGASASAGASGSEAMDLDANTWTCNHCTFINRGELTSCEICSL
PRASFLDH
BO17195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npl4-PA | 652 | CG4673-PA | 1..652 | 1..652 | 3459 | 100 | Plus |
Npl4-PD | 624 | CG4673-PD | 7..624 | 35..652 | 3280 | 100 | Plus |
Npl4-PB | 624 | CG4673-PB | 7..624 | 35..652 | 3280 | 100 | Plus |