Clone Sequence Records
BO17202.3prime Sequence
815 bp (758 high quality bases) assembled on 2006-10-13
> BO17202.3prime
ATGGTCTAGAAAGCTTGCGGTACTCCGACCAGCGCCTGACCCCGCTGACC
TGGCGAACTGCAGCAATGCAGGCGGCAGCCAAAAGGGATGGCAGATCGTT
GGCAAATTGTACAATGTATAATCCGCCATGCGAAGGAGCAACTGCGCCAA
AATGGACAGCATCTCTTCGAAGCTTATATATCGCTGGTACGGCTGGGTGT
GATGGTTCCGCTCGTACTCATCCAACATCTCGATGTAGTTCTTGAAATCG
GAGCGAGTGAGAAAACTGCAGGCGAAGAGCTCCACAAAACTGGCGGTGGT
GGGACGTATTAGCTCGAAGTTCAGGAAGCACAGGATCTTCCTTTCCACAG
CCTTGTACTCGAATGCCGTATAGGCGTTCTTGACCAATCGGTTCATTTCG
CTGTAGCGCGGAATAAACGCATCCGTGTTTTCGATCTGCGCAGCTATATG
AAGACAAGTGATGGCCACCAGGAGCAATTTGTCCGGACGGATTTTGTAGT
AATCAACAAAGCGATCCATATAGTAGACGGCCAGGTGCAAAGCACAGCGA
CTAAGCTTGTGGGCGCTGGTCGCCAGTTTGAGCAACTGCAGCATTCTTCG
GCGCTCGTTCAGCTGCGGCGAAAGGTAAAACAAAGGCCGACGGCTGAGTT
CTTGCTCCCTCATGGTCAAAAATATATCCCGGGCATAGTCGGTGAGCCAG
TGCGTCTTAGCCAGGCGCTCGACATCTGCTTGCGGGCAAGTTTTCTTCAA
TTTGCGGTCGACGACGAAGATGTTCTGCTCGGCAGCCACTTTCTGCTCCA
TGTCGACTGATAACT
BO17202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10308-PB | 786 | CycJ-RB | 1..783 | 801..19 | 3915 | 100 | Minus |
CG10308-PA | 1161 | CycJ-RA | 1..694 | 801..108 | 3470 | 100 | Minus |
CG10308-PA | 1161 | CycJ-RA | 702..790 | 107..19 | 445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycJ-RB | 1471 | CG10308-RB | 112..894 | 801..19 | 3915 | 100 | Minus |
CycJ-RA | 1478 | CG10308-RA | 112..901 | 801..19 | 3835 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3466949..3467372 | 531..108 | 2120 | 100 | Minus |
3L | 28110227 | 3L | 3466684..3466872 | 719..531 | 945 | 100 | Minus |
3L | 28110227 | 3L | 3467433..3467521 | 107..19 | 445 | 100 | Minus |
3L | 28110227 | 3L | 3466539..3466622 | 801..718 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:11:22 has no hits.
BO17202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:03:57 Download gff for
BO17202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10308-PB | 1..786 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:01:13 Download gff for
BO17202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..899 | 11..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:34 Download gff for
BO17202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..899 | 11..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:34 Download gff for
BO17202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3466539..3466622 | 718..801 | 100 | -> | Minus |
3L | 3466686..3466872 | 531..717 | 100 | -> | Minus |
3L | 3466950..3467372 | 108..530 | 100 | -> | Minus |
3L | 3467433..3467526 | 11..107 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:01:13 Download gff for
BO17202.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3466539..3466622 | 718..801 | 100 | -> | Minus |
arm_3L | 3466686..3466872 | 531..717 | 100 | -> | Minus |
arm_3L | 3466950..3467372 | 108..530 | 100 | -> | Minus |
arm_3L | 3467433..3467526 | 11..107 | 95 | | Minus |
BO17202.complete Sequence
817 bp assembled on 2011-06-28
GenBank Submission: KX797301
> BO17202.complete
GAAGTTATCAGTCGACATGGAGCAGAAAGTGGCTGCCGAGCAGAACATCT
TCGTCGTCGACCGCAAATTGAAGAAAACTTGCCCGCAAGCAGATGTCGAG
CGCCTGGCTAAGACGCACTGGCTCACCGACTATGCCCGGGATATATTTTT
GACCATGAGGGAGCAAGAACTCAGCCGTCGGCCTTTGTTTTACCTTTCGC
CGCAGCTGAACGAGCGCCGAAGAATGCTGCAGTTGCTCAAACTGGCGACC
AGCGCCCACAAGCTTAGTCGCTGTGCTTTGCACCTGGCCGTCTACTATAT
GGATCGCTTTGTTGATTACTACAAAATCCGTCCGGACAAATTGCTCCTGG
TGGCCATCACTTGTCTTCATATAGCTGCGCAGATCGAAAACACGGATGCG
TTTATTCCGCGCTACAGCGAAATGAACCGATTGGTCAAGAACGCCTATAC
GGCATTCGAGTACAAGGCTGTGGAAAGGAAGATCCTGTGCTTCCTGAACT
TCGAGCTAATACGTCCCACCACCGCCAGTTTTGTGGAGCTCTTCGCCTGC
AGTTTTCTCACTCGCTCCGATTTCAAGAACTACATCGAGATGTTGGATGA
GTACGAGCGGAACCATCACACCCAGCCGTACCAGCGATATATAAGCTTCG
AAGAGATGCTGTCCATTTTGGCGCAGTTGCTCCTTCGCATGGCGGATTAT
ACATTGTACAATTTGCCAACGATCTGCCATCCCTTTTGGCTGCCGCCTGC
ATTGCTGCAGTTCGCCAGGTCAGCGGGGTCAGGCGCTGGTCGGAGTACCG
CAAGCTTTCTAGACCAT
BO17202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycJ-RB | 786 | CG10308-PB | 1..783 | 17..799 | 3915 | 100 | Plus |
CycJ-RA | 1161 | CG10308-PA | 1..790 | 17..799 | 3810 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycJ-RB | 1471 | CG10308-RB | 112..894 | 17..799 | 3915 | 100 | Plus |
CycJ-RA | 1478 | CG10308-RA | 112..901 | 17..799 | 3810 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3466949..3467372 | 287..710 | 2120 | 100 | Plus |
3L | 28110227 | 3L | 3466684..3466872 | 99..287 | 945 | 100 | Plus |
3L | 28110227 | 3L | 3467433..3467521 | 711..799 | 445 | 100 | Plus |
3L | 28110227 | 3L | 3466539..3466622 | 17..100 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:04:24 has no hits.
BO17202.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:02 Download gff for
BO17202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 126..908 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:43 Download gff for
BO17202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..894 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:34 Download gff for
BO17202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycJ-RB | 112..894 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:34 Download gff for
BO17202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3466539..3466622 | 17..100 | 100 | -> | Plus |
3L | 3466686..3466872 | 101..287 | 100 | -> | Plus |
3L | 3466950..3467372 | 288..710 | 100 | -> | Plus |
3L | 3467433..3467521 | 711..801 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:43 Download gff for
BO17202.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3466686..3466872 | 101..287 | 100 | -> | Plus |
arm_3L | 3466539..3466622 | 17..100 | 100 | -> | Plus |
arm_3L | 3466950..3467372 | 288..710 | 100 | -> | Plus |
arm_3L | 3467433..3467521 | 711..801 | 97 | | Plus |
BO17202.pep Sequence
Translation from 16 to 817
> BO17202.pep
MEQKVAAEQNIFVVDRKLKKTCPQADVERLAKTHWLTDYARDIFLTMREQ
ELSRRPLFYLSPQLNERRRMLQLLKLATSAHKLSRCALHLAVYYMDRFVD
YYKIRPDKLLLVAITCLHIAAQIENTDAFIPRYSEMNRLVKNAYTAFEYK
AVERKILCFLNFELIRPTTASFVELFACSFLTRSDFKNYIEMLDEYERNH
HTQPYQRYISFEEMLSILAQLLLRMADYTLYNLPTICHPFWLPPALLQFA
RSAGSGAGRSTASFLDH
BO17202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycJ-PB | 261 | CG10308-PB | 1..261 | 1..261 | 1356 | 100 | Plus |
CycJ-PA | 386 | CG10308-PA | 1..231 | 1..231 | 1191 | 100 | Plus |