Clone BO17206 Report

Search the DGRC for BO17206

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG7582-RA
Protein status:BO17206.pep: Imported from assembly
Sequenced Size:796

Clone Sequence Records

BO17206.3prime Sequence

713 bp (694 high quality bases) assembled on 2006-10-13

> BO17206.3prime
ATGGTCTAGAAAGCTTGCCTTAATTTTCTTGCGAAGGGAGCGCTGGAGGG
CAGGACCGTCGTCCGCGGTGCTCAGCGCAATGGCAAACTGGGCGGCGTAG
TAGGTGATCATGATCTGGAGGCGGGCGCAGGGCAGGGGCACGCCCACGAA
CATGGTGACCGCGATCAGGGCGTCGGAGATCACAAACAGAATGGCTCCGA
TGGCACAGAACACGGCGAGGAAGTTCCTGGAGTCCACGGCGCGGGCCAGC
GATCTCCACAGCATTGTGGTGATCAGGAAACAGTAGATGGGCACTCCGAT
GATGAGAATCTCGTCCAGTTTCGTGTGCACGAAGTAAACAACTGGGGGTT
TCAAATATTCCAGGTAAGGTATACGTATATAATGACCAGTAAACTTACAA
AGCGATACGGCCACGTACAAGAGCAGTCCAATGAACCACTTTATGGGCTT
CCAGCCAAAGGCGCTGATATAAAACACGTGCGCCACTCCAAAGGAGATCA
TTCCGAAGGGAAAGAGATTTATGTTGAGCAGAGCATCACCACCACTCGAG
AAAACCAGACCCAATAGAATCCAAAGTGAGCGACGGTATTCCTTCTTGAG
CGAGATTCCCTTGGCCACCACATAGAATACAAGCGCGAAAATGGGCAGGC
ATTTGAGCACGGTGGTCCATAGCTCTCCTTGAGGATCCTTCCTCACCAGC
GAGAAGTATAGGA

BO17206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-PA 765 CG7582-RA 68..762 713..19 3475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-RA 1190 CG7582-RA 243..937 713..19 3475 100 Minus
CG7582-RB 979 CG7582-RB 404..726 341..19 1615 100 Minus
CG7582-RB 979 CG7582-RB 89..403 713..399 1575 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29680494..29681064 19..589 2855 100 Plus
3R 32079331 3R 29681127..29681250 590..713 620 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:56:29 has no hits.

BO17206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:00 Download gff for BO17206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7582-PA 69..765 16..712 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:12:26 Download gff for BO17206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 244..943 13..712 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:55 Download gff for BO17206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 244..943 13..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:55 Download gff for BO17206.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29680488..29681064 13..589 99 <- Plus
3R 29681127..29681249 590..712 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:12:26 Download gff for BO17206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25506210..25506786 13..589 99 <- Plus
arm_3R 25506849..25506971 590..712 100   Plus

BO17206.complete Sequence

796 bp assembled on 2010-07-02

GenBank Submission: KX794056

> BO17206.complete
GAAGTTATCAGTCGACATGAACGATTTCGGGCAGTTCGCTAAGTCGCAAG
GCCCAAAGTTGGTGCCATTCCTGGTTACTATTGTCCTATACTTCTCGCTG
GTGAGGAAGGATCCTCAAGGAGAGCTATGGACCACCGTGCTCAAATGCCT
GCCCATTTTCGCGCTTGTATTCTATGTGGTGGCCAAGGGAATCTCGCTCA
AGAAGGAATACCGTCGCTCACTTTGGATTCTATTGGGTCTGGTTTTCTCG
AGTGGTGGTGATGCTCTGCTCAACATAAATCTCTTTCCCTTCGGAATGAT
CTCCTTTGGAGTGGCGCACGTGTTTTATATCAGCGCCTTTGGCTGGAAGC
CCATAAAGTGGTTCATTGGACTGCTCTTGTACGTGGCCGTATCGCTTTGT
AAGTTTACTGGTCATTATATACGTATACCTTACCTGGAATATTTGAAACC
CCCAGTTGTTTACTTCGTGCACACGAAACTGGACGAGATTCTCATCATCG
GAGTGCCCATCTACTGTTTCCTGATCACCACAATGCTGTGGAGATCGCTG
GCCCGCGCCGTGGACTCCAGGAACTTCCTCGCCGTGTTCTGTGCCATCGG
AGCCATTCTGTTTGTGATCTCCGACGCCCTGATCGCGGTCACCATGTTCG
TGGGCGTGCCCCTGCCCTGCGCCCGCCTCCAGATCATGATCACCTACTAC
GCCGCCCAGTTTGCCATTGCGCTGAGCACCGCGGACGACGGTCCTGCCCT
CCAGCGCTCCCTTCGCAAGAAAATTAAGGCAAGCTTTCTAGACCAT

BO17206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-RA 765 CG7582-PA 1..762 17..778 3810 100 Plus
CG7582-RB 429 CG7582-PB 104..426 456..778 1615 100 Plus
CG7582-RB 429 CG7582-PB 1..103 296..398 515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-RA 1190 CG7582-RA 176..937 17..778 3810 100 Plus
CG7582-RB 979 CG7582-RB 43..403 38..398 1805 100 Plus
CG7582-RB 979 CG7582-RB 404..726 456..778 1615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29680494..29681064 778..208 2855 100 Minus
3R 32079331 3R 29681127..29681296 207..38 850 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:18:29 has no hits.

BO17206.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:32 Download gff for BO17206.complete
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 176..937 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:12 Download gff for BO17206.complete
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 176..937 17..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:22 Download gff for BO17206.complete
Subject Subject Range Query Range Percent Splice Strand
CG7582-RA 176..937 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:22 Download gff for BO17206.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29680491..29681064 208..780 99 <- Minus
3R 29681127..29681296 38..207 100 <- Minus
3R 29681846..29681866 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:12 Download gff for BO17206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25506213..25506786 208..780 99 <- Minus
arm_3R 25506849..25507018 38..207 100 <- Minus
arm_3R 25507568..25507588 17..37 100   Minus

BO17206.pep Sequence

Translation from 16 to 796

> BO17206.pep
MNDFGQFAKSQGPKLVPFLVTIVLYFSLVRKDPQGELWTTVLKCLPIFAL
VFYVVAKGISLKKEYRRSLWILLGLVFSSGGDALLNINLFPFGMISFGVA
HVFYISAFGWKPIKWFIGLLLYVAVSLCKFTGHYIRIPYLEYLKPPVVYF
VHTKLDEILIIGVPIYCFLITTMLWRSLARAVDSRNFLAVFCAIGAILFV
ISDALIAVTMFVGVPLPCARLQIMITYYAAQFAIALSTADDGPALQRSLR
KKIKASFLDH

BO17206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7582-PA 254 CG7582-PA 1..254 1..254 1311 100 Plus
CG7582-PB 142 CG7582-PB 1..142 94..254 684 87.6 Plus