Clone Sequence Records
BO17206.3prime Sequence
713 bp (694 high quality bases) assembled on 2006-10-13
> BO17206.3prime
ATGGTCTAGAAAGCTTGCCTTAATTTTCTTGCGAAGGGAGCGCTGGAGGG
CAGGACCGTCGTCCGCGGTGCTCAGCGCAATGGCAAACTGGGCGGCGTAG
TAGGTGATCATGATCTGGAGGCGGGCGCAGGGCAGGGGCACGCCCACGAA
CATGGTGACCGCGATCAGGGCGTCGGAGATCACAAACAGAATGGCTCCGA
TGGCACAGAACACGGCGAGGAAGTTCCTGGAGTCCACGGCGCGGGCCAGC
GATCTCCACAGCATTGTGGTGATCAGGAAACAGTAGATGGGCACTCCGAT
GATGAGAATCTCGTCCAGTTTCGTGTGCACGAAGTAAACAACTGGGGGTT
TCAAATATTCCAGGTAAGGTATACGTATATAATGACCAGTAAACTTACAA
AGCGATACGGCCACGTACAAGAGCAGTCCAATGAACCACTTTATGGGCTT
CCAGCCAAAGGCGCTGATATAAAACACGTGCGCCACTCCAAAGGAGATCA
TTCCGAAGGGAAAGAGATTTATGTTGAGCAGAGCATCACCACCACTCGAG
AAAACCAGACCCAATAGAATCCAAAGTGAGCGACGGTATTCCTTCTTGAG
CGAGATTCCCTTGGCCACCACATAGAATACAAGCGCGAAAATGGGCAGGC
ATTTGAGCACGGTGGTCCATAGCTCTCCTTGAGGATCCTTCCTCACCAGC
GAGAAGTATAGGA
BO17206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-PA | 765 | CG7582-RA | 68..762 | 713..19 | 3475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-RA | 1190 | CG7582-RA | 243..937 | 713..19 | 3475 | 100 | Minus |
CG7582-RB | 979 | CG7582-RB | 404..726 | 341..19 | 1615 | 100 | Minus |
CG7582-RB | 979 | CG7582-RB | 89..403 | 713..399 | 1575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29680494..29681064 | 19..589 | 2855 | 100 | Plus |
3R | 32079331 | 3R | 29681127..29681250 | 590..713 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:56:29 has no hits.
BO17206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:00 Download gff for
BO17206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-PA | 69..765 | 16..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:12:26 Download gff for
BO17206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 244..943 | 13..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:58:55 Download gff for
BO17206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 244..943 | 13..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:58:55 Download gff for
BO17206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29680488..29681064 | 13..589 | 99 | <- | Plus |
3R | 29681127..29681249 | 590..712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:12:26 Download gff for
BO17206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25506210..25506786 | 13..589 | 99 | <- | Plus |
arm_3R | 25506849..25506971 | 590..712 | 100 | | Plus |
BO17206.complete Sequence
796 bp assembled on 2010-07-02
GenBank Submission: KX794056
> BO17206.complete
GAAGTTATCAGTCGACATGAACGATTTCGGGCAGTTCGCTAAGTCGCAAG
GCCCAAAGTTGGTGCCATTCCTGGTTACTATTGTCCTATACTTCTCGCTG
GTGAGGAAGGATCCTCAAGGAGAGCTATGGACCACCGTGCTCAAATGCCT
GCCCATTTTCGCGCTTGTATTCTATGTGGTGGCCAAGGGAATCTCGCTCA
AGAAGGAATACCGTCGCTCACTTTGGATTCTATTGGGTCTGGTTTTCTCG
AGTGGTGGTGATGCTCTGCTCAACATAAATCTCTTTCCCTTCGGAATGAT
CTCCTTTGGAGTGGCGCACGTGTTTTATATCAGCGCCTTTGGCTGGAAGC
CCATAAAGTGGTTCATTGGACTGCTCTTGTACGTGGCCGTATCGCTTTGT
AAGTTTACTGGTCATTATATACGTATACCTTACCTGGAATATTTGAAACC
CCCAGTTGTTTACTTCGTGCACACGAAACTGGACGAGATTCTCATCATCG
GAGTGCCCATCTACTGTTTCCTGATCACCACAATGCTGTGGAGATCGCTG
GCCCGCGCCGTGGACTCCAGGAACTTCCTCGCCGTGTTCTGTGCCATCGG
AGCCATTCTGTTTGTGATCTCCGACGCCCTGATCGCGGTCACCATGTTCG
TGGGCGTGCCCCTGCCCTGCGCCCGCCTCCAGATCATGATCACCTACTAC
GCCGCCCAGTTTGCCATTGCGCTGAGCACCGCGGACGACGGTCCTGCCCT
CCAGCGCTCCCTTCGCAAGAAAATTAAGGCAAGCTTTCTAGACCAT
BO17206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-RA | 765 | CG7582-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
CG7582-RB | 429 | CG7582-PB | 104..426 | 456..778 | 1615 | 100 | Plus |
CG7582-RB | 429 | CG7582-PB | 1..103 | 296..398 | 515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-RA | 1190 | CG7582-RA | 176..937 | 17..778 | 3810 | 100 | Plus |
CG7582-RB | 979 | CG7582-RB | 43..403 | 38..398 | 1805 | 100 | Plus |
CG7582-RB | 979 | CG7582-RB | 404..726 | 456..778 | 1615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29680494..29681064 | 778..208 | 2855 | 100 | Minus |
3R | 32079331 | 3R | 29681127..29681296 | 207..38 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:18:29 has no hits.
BO17206.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:32 Download gff for
BO17206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 176..937 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:12 Download gff for
BO17206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 176..937 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:22 Download gff for
BO17206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7582-RA | 176..937 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:22 Download gff for
BO17206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29680491..29681064 | 208..780 | 99 | <- | Minus |
3R | 29681127..29681296 | 38..207 | 100 | <- | Minus |
3R | 29681846..29681866 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:12 Download gff for
BO17206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25506213..25506786 | 208..780 | 99 | <- | Minus |
arm_3R | 25506849..25507018 | 38..207 | 100 | <- | Minus |
arm_3R | 25507568..25507588 | 17..37 | 100 | | Minus |
BO17206.pep Sequence
Translation from 16 to 796
> BO17206.pep
MNDFGQFAKSQGPKLVPFLVTIVLYFSLVRKDPQGELWTTVLKCLPIFAL
VFYVVAKGISLKKEYRRSLWILLGLVFSSGGDALLNINLFPFGMISFGVA
HVFYISAFGWKPIKWFIGLLLYVAVSLCKFTGHYIRIPYLEYLKPPVVYF
VHTKLDEILIIGVPIYCFLITTMLWRSLARAVDSRNFLAVFCAIGAILFV
ISDALIAVTMFVGVPLPCARLQIMITYYAAQFAIALSTADDGPALQRSLR
KKIKASFLDH
BO17206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7582-PA | 254 | CG7582-PA | 1..254 | 1..254 | 1311 | 100 | Plus |
CG7582-PB | 142 | CG7582-PB | 1..142 | 94..254 | 684 | 87.6 | Plus |