Clone Sequence Records
BO17214.complete Sequence
1858 bp assembled on 2010-07-15
GenBank Submission: KX797247
> BO17214.complete
GAAGTTATCAGTCGACATGTCGAAAATGAGGGGTCGCATTCTGATCCCAC
TGCCCAATACCGGAGCGATGGGTCGCAAGCGCAACAACTTCTACATGCGG
AGTCTGTTCCTGCTGGCCCTGGGCATTTTCGGTCTGCTCCAGTACAACAA
CTTCAATTATCTGGACTCGCGGGACAATGTGCTGGGCGACGCGGTGACCA
ACGACTCGGACGACGCCATCCTGGCCATGGTGCCCGCCACCCTGCACAAG
TATCTGACGCCCCACTCGCGCAATCACAGCGCCTCGGGAGCAGGAGCCCT
CAACGGCGCGGCCCTGCTCCTGAATGCCAGTAGTCCGGGCGCAGCTACTG
CCAGCACCATCAGCTTCGACGTGTACCATCCTCCGAATATCACCGAGATC
AAGCGCCAGATCGTCAGGTACAACGACATGCAGATGGTGCTCAACGAGGA
CGTCTTTGGACCGCTGCAGAACGACTCTGTGATAATCGTGGTCCAGGTGC
ACACGAGGATCACCTACCTGCGCCACCTGATCGTCAGCCTGGCGCAGGCC
CGGGACATTTCGAAGGTGCTGCTGGTGTTCTCGCACGACTACTACGACGA
CGACATCAACGACCTGGTGCAGCAGATCGACTTCTGCAAGGTGATGCAGA
TCTTCTACCCGTACTCCATTCAGACGCATCCTAACGAGTATCCCGGCGTG
GATCCCAACGACTGTCCGCGAAACATCAAAAAGGAGCAAGCTCTGATCAC
CAACTGCAACAATGCGATGTATCCCGATCTCTATGGCCACTATCGGGAGG
CGAAGTTCACGCAGACGAAGCACCATTGGATCTGGAAGGCCAACCGGGTG
TTCAACGAACTGGAGGTGACCCGCTATCACACAGGACTGGTGCTGTTCCT
CGAGGAGGACCACTACGTGGCCGAGGACTTCCTGTACCTGCTGGCTATGA
TGCAGCAACGCACCAAAGACTTGTGCCCCCAGTGCAACGTGCTGTCCCTG
GGCACCTATCTCAAGACCTTCAACTACTACACGTACCACAGCAAGACTAA
CAAGAAATCCTATGCTTCCTCGCTGATCTCGACAAACAGTCTATTAGGAT
ACAATAGGAATAACAATAGAAACTCTGTGCAATTAGCTGTGTCGTCCTCT
TACTCCTCCTCATCATCTGCGCAATCACCACCGCCATCCAAAGTCTATGT
GGGCGACACATCTGACAACCAGAGAGCCAGTGACTCCAGTAGCAGGCGGG
GCAACCTCATCAACACTGTCACCGACACAGCCACAGCCACCGCCGCCACA
TCCGACACCAGCAATAACGAGCAAAGTAGCCATAGCAGCAGCAAAAATGG
TGCACAAACATGGAACTATCATGTCCTGCCGTCATTGTATTCCGTCTATC
AGAAGGTGGAGGTCATGCCCTGGGTCAGCAGCAAGCACAACATGGGCTTC
GCCTTCAATCGCACCACCTGGTCGAACATCCGGAAATGCGCCCGCCACTT
CTGCACCTACGATGACTACAACTGGGACTGGTCCTTGCAGCACGTTTCGC
AGCAGTGTCTGCGGCGAAAGCTGCACGCCATGATTGTCAAGGGGCCGCGA
GTCTTCCACATCGGAGAATGCGGCGTTCATCACAAGAACAAGAACTGCGA
GTCCAACCAGGTGATCTCGAAGGTGCAGCACGTGCTGCGCATAGCCCGCA
ACTCGCACCAGCTCTTCCCGCGCTCCCTCACCCTCACGGTGCCCAGTCTG
ATGAAGAAGTCGAAGCTGCGCAAAGGCAACGGCGGCTGGGGCGACATGCG
GGATCACGAGCTGTGCCTCAACATGACGCTGGCCACGAGGGCAAGCTTTC
TAGACCAT
BO17214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgat2-RA | 1827 | CG7921-PA | 1..1824 | 17..1840 | 9120 | 100 | Plus |
| Mgat2-RC | 1530 | CG7921-PC | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| Mgat2-RB | 1467 | CG7921-PB | 1..1029 | 17..1045 | 5145 | 100 | Plus |
| Mgat2-RC | 1530 | CG7921-PC | 1083..1527 | 1396..1840 | 2195 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgat2-RA | 3331 | CG7921-RA | 642..2469 | 13..1840 | 9125 | 99.9 | Plus |
| Mgat2-RC | 3034 | CG7921-RC | 642..1674 | 13..1045 | 5150 | 99.9 | Plus |
| Mgat2-RB | 2672 | CG7921-RB | 343..1375 | 13..1045 | 5150 | 99.9 | Plus |
| Mgat2-RC | 3034 | CG7921-RC | 1728..2172 | 1396..1840 | 2195 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30018691..30019118 | 738..311 | 2140 | 100 | Minus |
| 3R | 32079331 | 3R | 30017623..30017986 | 1407..1044 | 1820 | 100 | Minus |
| 3R | 32079331 | 3R | 30016375..30016595 | 1840..1620 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 30016660..30016876 | 1620..1404 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 30018266..30018431 | 1045..880 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 30019182..30019331 | 311..162 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 30018487..30018633 | 885..739 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 30019389..30019518 | 161..32 | 650 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6844 | 1228..1347 | 175 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2423 | 1251..1347 | 151 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6919 | 1216..1347 | 138 | 60.2 | Plus |
BO17214.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:17 Download gff for
BO17214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat2-RA | 683..2506 | 17..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:11 Download gff for
BO17214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat2-RA | 646..2469 | 17..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:59 Download gff for
BO17214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat2-RA | 646..2469 | 17..1842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:59 Download gff for
BO17214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30018488..30018633 | 739..884 | 100 | <- | Minus |
| 3R | 30017625..30017984 | 1046..1405 | 100 | <- | Minus |
| 3R | 30016373..30016594 | 1621..1842 | 99 | <- | Minus |
| 3R | 30016660..30016874 | 1406..1620 | 100 | <- | Minus |
| 3R | 30018266..30018426 | 885..1045 | 100 | <- | Minus |
| 3R | 30018691..30019117 | 312..738 | 100 | <- | Minus |
| 3R | 30019182..30019331 | 162..311 | 100 | <- | Minus |
| 3R | 30019389..30019517 | 33..161 | 100 | <- | Minus |
| 3R | 30019595..30019610 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:11 Download gff for
BO17214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25845317..25845332 | 17..32 | 100 | | Minus |
| arm_3R | 25845111..25845239 | 33..161 | 100 | <- | Minus |
| arm_3R | 25842095..25842316 | 1621..1842 | 99 | <- | Minus |
| arm_3R | 25842382..25842596 | 1406..1620 | 100 | <- | Minus |
| arm_3R | 25843347..25843706 | 1046..1405 | 100 | <- | Minus |
| arm_3R | 25843988..25844148 | 885..1045 | 100 | <- | Minus |
| arm_3R | 25844210..25844355 | 739..884 | 100 | <- | Minus |
| arm_3R | 25844413..25844839 | 312..738 | 100 | <- | Minus |
| arm_3R | 25844904..25845053 | 162..311 | 100 | <- | Minus |
BO17214.3prime Sequence
793 bp (713 high quality bases) assembled on 2006-10-13
> BO17214.3prime
ATGGTCTAGAAAGCTTGCCCTCGTGGCCAGCGTCATGTTGAGGCACAGCT
CGTGATCCCGCATGTCGCCCCAGCCGCCGTTGCCTTTGCGCAGCTTCGAC
TTCTTCATCAGACTGGGCACCGTGAGGGTGAGGGAGCGCGGGAAGAGCTG
GTGCGAGTTGCGGGCTATGCGCAGCACGTGCTGCACCTTCGAGATCACCT
GGTTGGACTCGCAGTTCTTGTTCTTGTGATGAACGCCGCATTCTCCGATG
TGGAAGACTCGCGGCCCCTTGACAATCATGGCGTGCAGCTTTCGCCGCAG
ACACTGCTGCGAAACGTGCTGCAAGGACCAGTCCCAGTTGTAGTCATCGT
AGGTGCAGAAGTGGCGGGCGCATTTCCGGATGTTCGACCAGGTGGTGCGA
TTGAAGGCGAAGCCCATGTTGTGCTTGCTGCTGACCCAGGGCATGACCTC
CACCTTCTGATAGACGGAATACAATGACGGCAGGACATGATAGTTCCATG
TTTGTGCACCATTTTTGCTGCTGCTATGGCTACTTTGCTCGTTATTGCTG
GTGTCGGATGTGGCGGCGGTGGCTGTGGCTGTGTCGGTGACAGTGTTGAT
GAGGTTGCCCCGCCTGCTACTGGAGTCACTGGCTCTCTGGTTGTCAGATG
TGTCGCCCACATAGACTTTGGATGGCGGTGGTGATTGCGCAGATGATGAG
GAGGAGTAAGAGGACGACACAGCTAATTGCACAGAGTTTCTAATGTTATT
CCTATTGTATCCTAATAGACTGTTTGTCGAGATCAGCGAGGAA
BO17214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7921-PA | 1827 | Mgat2-RA | 1050..1824 | 793..19 | 3850 | 99.8 | Minus |
| CG7921-PB | 1467 | Mgat2-RB | 1027..1464 | 456..19 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgat2-RA | 3331 | CG7921-RA | 1695..2469 | 793..19 | 3860 | 99.9 | Minus |
| Mgat2-RC | 3034 | CG7921-RC | 1728..2172 | 463..19 | 2195 | 99.6 | Minus |
| Mgat2-RB | 2672 | CG7921-RB | 1373..1810 | 456..19 | 2190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30017623..30017964 | 452..793 | 1695 | 99.7 | Plus |
| 3R | 32079331 | 3R | 30016375..30016595 | 19..239 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 30016660..30016876 | 239..455 | 1085 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6844 | 631..512 | 175 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6822 | 608..513 | 155 | 67.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2423 | 608..512 | 151 | 64.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2657 | 622..374 | 145 | 53.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6919 | 643..512 | 138 | 60.2 | Minus |
| G3 | 4605 | G3 G3 4605bp | 3140..3191 | 775..724 | 107 | 67.3 | Minus |
BO17214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:02 Download gff for
BO17214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7921-PA | 1052..1827 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:15:40 Download gff for
BO17214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat2-RA | 1695..2473 | 14..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:22:51 Download gff for
BO17214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat2-RA | 1695..2473 | 14..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:22:51 Download gff for
BO17214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30016371..30016594 | 14..238 | 99 | <- | Plus |
| 3R | 30016660..30016874 | 239..453 | 100 | <- | Plus |
| 3R | 30017625..30017964 | 454..793 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:15:40 Download gff for
BO17214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25842093..25842316 | 14..238 | 99 | <- | Plus |
| arm_3R | 25842382..25842596 | 239..453 | 100 | <- | Plus |
| arm_3R | 25843347..25843686 | 454..793 | 99 | | Plus |
BO17214.pep Sequence
Translation from 16 to 1858
> BO17214.pep
MSKMRGRILIPLPNTGAMGRKRNNFYMRSLFLLALGIFGLLQYNNFNYLD
SRDNVLGDAVTNDSDDAILAMVPATLHKYLTPHSRNHSASGAGALNGAAL
LLNASSPGAATASTISFDVYHPPNITEIKRQIVRYNDMQMVLNEDVFGPL
QNDSVIIVVQVHTRITYLRHLIVSLAQARDISKVLLVFSHDYYDDDINDL
VQQIDFCKVMQIFYPYSIQTHPNEYPGVDPNDCPRNIKKEQALITNCNNA
MYPDLYGHYREAKFTQTKHHWIWKANRVFNELEVTRYHTGLVLFLEEDHY
VAEDFLYLLAMMQQRTKDLCPQCNVLSLGTYLKTFNYYTYHSKTNKKSYA
SSLISTNSLLGYNRNNNRNSVQLAVSSSYSSSSSAQSPPPSKVYVGDTSD
NQRASDSSSRRGNLINTVTDTATATAATSDTSNNEQSSHSSSKNGAQTWN
YHVLPSLYSVYQKVEVMPWVSSKHNMGFAFNRTTWSNIRKCARHFCTYDD
YNWDWSLQHVSQQCLRRKLHAMIVKGPRVFHIGECGVHHKNKNCESNQVI
SKVQHVLRIARNSHQLFPRSLTLTVPSLMKKSKLRKGNGGWGDMRDHELC
LNMTLATRASFLDH
BO17214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgat2-PA | 608 | CG7921-PA | 1..608 | 1..608 | 3227 | 100 | Plus |
| Mgat2-PB | 488 | CG7921-PB | 1..367 | 1..369 | 1827 | 94.6 | Plus |
| Mgat2-PC | 509 | CG7921-PC | 1..347 | 1..347 | 1821 | 98.8 | Plus |
| Mgat2-PB | 488 | CG7921-PB | 333..488 | 447..608 | 822 | 92.6 | Plus |
| Mgat2-PC | 509 | CG7921-PC | 357..509 | 456..608 | 821 | 96.7 | Plus |
