Clone Sequence Records
BO17216.3prime Sequence
542 bp (542 high quality bases) assembled on 2006-10-13
> BO17216.3prime
ATGGTCTAGAAAGCTTGCTTCGTTCTGGCTCGCTATCCCATTGCCAACGA
CTTTGCCACTAATCTTGGCCATTTCCCAGAAGTAATCGGCCACATCGCTC
ACGAACTTGGTGGATATATTCTGCAGCTTCTGGCCGGTCAGGAGTGTCTT
ATATTGCAAGTCGGTGAGTCCTGTCTCGGATTGCCGATTAATCAGCAGTG
GAGAGTCCTTGAACTCTTCGAAGATATTCTGCCACAGCTCATCCTTTCGG
TCCAGTTCCTGCTCATCAATGGCTTGGCTCAGGCGCGTTATATAAAGACT
GATATCTTGGAATCGCTTGGTCTGGGGATTCAGAGCGGCCTTCACCTCGG
AGAAATAGGCGATTTGTGATCGGAACAACGAGTTCAGCAGGTGGACTGTC
TCCTCCTTGGCCTGTCTCTCCAACTCCCTTTGCACTGGATCATCGGAGTT
TAGGAGTTGTGGATTTGTGGGCTTGGCAGCCACTATTAATAGCTGGGCTA
CTAAAAGTAAAGGAATATATTTCAGCATGTCGACTGATAACT
BO17216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-PA | 513 | CG33307-RA | 1..510 | 528..19 | 2550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-RB | 1832 | CG33307-RB | 42..551 | 528..19 | 2550 | 100 | Minus |
CG33307-RA | 586 | CG33307-RA | 42..551 | 528..19 | 2550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13841096..13841377 | 214..495 | 1410 | 100 | Plus |
2L | 23513712 | 2L | 13840841..13841037 | 19..215 | 985 | 100 | Plus |
2L | 23513712 | 2L | 13841444..13841479 | 493..528 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:42:14 has no hits.
BO17216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:04 Download gff for
BO17216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-PA | 1..513 | 18..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:30 Download gff for
BO17216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 32..551 | 19..538 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:55 Download gff for
BO17216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 32..551 | 19..538 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:55 Download gff for
BO17216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13840841..13841035 | 19..213 | 100 | <- | Plus |
2L | 13841096..13841374 | 214..492 | 100 | <- | Plus |
2L | 13841444..13841489 | 493..538 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:30 Download gff for
BO17216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13840841..13841035 | 19..213 | 100 | <- | Plus |
arm_2L | 13841096..13841374 | 214..492 | 100 | <- | Plus |
arm_2L | 13841444..13841489 | 493..538 | 91 | | Plus |
BO17216.5prime Sequence
542 bp (542 high quality bases) assembled on 2006-10-13
> BO17216.5prime
GAAGTTATCAGTCGACATGCTGAAATATATTCCTTTACTTTTAGTAGCCC
AGCTATTAATAGTGGCTGCCAAGCCCACAAATCCACAACTCCTAAACTCC
GATGATCCAGTGCAAAGGGAGTTGGAGAGACAGGCCAAGGAGGAGACAGT
CCACCTGCTGAACTCGTTGTTCCGATCACAAATCGCCTATTTCTCCGAGG
TGAAGGCCGCTCTGAATCCCCAGACCAAGCGATTCCAAGATATCAGTCTT
TATATAACGCGCCTGAGCCAAGCCATTGATGAGCAGGAACTGGACCGAAA
GGATGAGCTGTGGCAGAATATCTTCGAAGAGTTCAAGGACTCTCCACTGC
TGATTAATCGGCAATCCGAGACAGGACTCACCGACTTGCAATATAAGACA
CTCCTGACCGGCCAGAAGCTGCAGAATATATCCACCAAGTTCGTGAGCGA
TGTGGCCGATTACTTCTGGGAAATGGCCAAGATTAGTGGCAAAGTCGTTG
GCAATGGGATAGCGAGCCAGAACGAAGCAAGCTTTCTAGACC
BO17216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-PA | 513 | CG33307-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-RB | 1832 | CG33307-RB | 42..551 | 17..526 | 2550 | 100 | Plus |
CG33307-RA | 586 | CG33307-RA | 42..551 | 17..526 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13841096..13841377 | 331..50 | 1410 | 100 | Minus |
2L | 23513712 | 2L | 13840841..13841037 | 526..330 | 985 | 100 | Minus |
2L | 23513712 | 2L | 13841444..13841479 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:42:24 has no hits.
BO17216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:04 Download gff for
BO17216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-PA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:32 Download gff for
BO17216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 32..551 | 7..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:19 Download gff for
BO17216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 32..551 | 7..526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:19 Download gff for
BO17216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13840841..13841035 | 332..526 | 100 | <- | Minus |
2L | 13841096..13841374 | 53..331 | 100 | <- | Minus |
2L | 13841444..13841489 | 7..52 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:32 Download gff for
BO17216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13840841..13841035 | 332..526 | 100 | <- | Minus |
arm_2L | 13841096..13841374 | 53..331 | 100 | <- | Minus |
arm_2L | 13841444..13841489 | 7..52 | 91 | | Minus |
BO17216.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ634056
> BO17216.complete
GAAGTTATCAGTCGACATGCTGAAATATATTCCTTTACTTTTAGTAGCCC
AGCTATTAATAGTGGCTGCCAAGCCCACAAATCCACAACTCCTAAACTCC
GATGATCCAGTGCAAAGGGAGTTGGAGAGACAGGCCAAGGAGGAGACAGT
CCACCTGCTGAACTCGTTGTTCCGATCACAAATCGCCTATTTCTCCGAGG
TGAAGGCCGCTCTGAATCCCCAGACCAAGCGATTCCAAGATATCAGTCTT
TATATAACGCGCCTGAGCCAAGCCATTGATGAGCAGGAACTGGACCGAAA
GGATGAGCTGTGGCAGAATATCTTCGAAGAGTTCAAGGACTCTCCACTGC
TGATTAATCGGCAATCCGAGACAGGACTCACCGACTTGCAATATAAGACA
CTCCTGACCGGCCAGAAGCTGCAGAATATATCCACCAAGTTCGTGAGCGA
TGTGGCCGATTACTTCTGGGAAATGGCCAAGATTAGTGGCAAAGTCGTTG
GCAATGGGATAGCGAGCCAGAACGAAGCAAGCTTTCTAGACCAT
BO17216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-RB | 513 | CG33307-PB | 1..510 | 17..526 | 2550 | 100 | Plus |
CG33307-RA | 513 | CG33307-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-RB | 1832 | CG33307-RB | 42..551 | 17..526 | 2550 | 100 | Plus |
CG33307-RA | 586 | CG33307-RA | 42..551 | 17..526 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13841096..13841377 | 331..50 | 1410 | 100 | Minus |
2L | 23513712 | 2L | 13840841..13841037 | 526..330 | 985 | 100 | Minus |
2L | 23513712 | 2L | 13841444..13841479 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:40:48 has no hits.
BO17216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:47 Download gff for
BO17216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:23 Download gff for
BO17216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 21..540 | 7..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:13 Download gff for
BO17216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 42..551 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:47 Download gff for
BO17216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 21..540 | 7..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:06 Download gff for
BO17216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33307-RA | 42..551 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:06 Download gff for
BO17216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13840839..13841035 | 332..528 | 98 | <- | Minus |
2L | 13841096..13841374 | 53..331 | 100 | <- | Minus |
2L | 13841444..13841479 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:13 Download gff for
BO17216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13840839..13841035 | 332..528 | 98 | <- | Minus |
arm_2L | 13841096..13841374 | 53..331 | 100 | <- | Minus |
arm_2L | 13841444..13841479 | 17..52 | 100 | | Minus |
BO17216.pep Sequence
Translation from 16 to 544
> BO17216.pep
MLKYIPLLLVAQLLIVAAKPTNPQLLNSDDPVQRELERQAKEETVHLLNS
LFRSQIAYFSEVKAALNPQTKRFQDISLYITRLSQAIDEQELDRKDELWQ
NIFEEFKDSPLLINRQSETGLTDLQYKTLLTGQKLQNISTKFVSDVADYF
WEMAKISGKVVGNGIASQNEASFLDH
BO17216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33307-PB | 170 | CG33307-PB | 1..170 | 1..170 | 851 | 100 | Plus |
CG33307-PA | 170 | CG33307-PA | 1..170 | 1..170 | 851 | 100 | Plus |