Clone BO17216 Report

Search the DGRC for BO17216

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG33307-RA
Protein status:BO17216.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO17216.3prime Sequence

542 bp (542 high quality bases) assembled on 2006-10-13

> BO17216.3prime
ATGGTCTAGAAAGCTTGCTTCGTTCTGGCTCGCTATCCCATTGCCAACGA
CTTTGCCACTAATCTTGGCCATTTCCCAGAAGTAATCGGCCACATCGCTC
ACGAACTTGGTGGATATATTCTGCAGCTTCTGGCCGGTCAGGAGTGTCTT
ATATTGCAAGTCGGTGAGTCCTGTCTCGGATTGCCGATTAATCAGCAGTG
GAGAGTCCTTGAACTCTTCGAAGATATTCTGCCACAGCTCATCCTTTCGG
TCCAGTTCCTGCTCATCAATGGCTTGGCTCAGGCGCGTTATATAAAGACT
GATATCTTGGAATCGCTTGGTCTGGGGATTCAGAGCGGCCTTCACCTCGG
AGAAATAGGCGATTTGTGATCGGAACAACGAGTTCAGCAGGTGGACTGTC
TCCTCCTTGGCCTGTCTCTCCAACTCCCTTTGCACTGGATCATCGGAGTT
TAGGAGTTGTGGATTTGTGGGCTTGGCAGCCACTATTAATAGCTGGGCTA
CTAAAAGTAAAGGAATATATTTCAGCATGTCGACTGATAACT

BO17216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-PA 513 CG33307-RA 1..510 528..19 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-RB 1832 CG33307-RB 42..551 528..19 2550 100 Minus
CG33307-RA 586 CG33307-RA 42..551 528..19 2550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13841096..13841377 214..495 1410 100 Plus
2L 23513712 2L 13840841..13841037 19..215 985 100 Plus
2L 23513712 2L 13841444..13841479 493..528 180 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:42:14 has no hits.

BO17216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:04 Download gff for BO17216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-PA 1..513 18..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:30 Download gff for BO17216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 32..551 19..538 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:55 Download gff for BO17216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 32..551 19..538 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:55 Download gff for BO17216.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13840841..13841035 19..213 100 <- Plus
2L 13841096..13841374 214..492 100 <- Plus
2L 13841444..13841489 493..538 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:30 Download gff for BO17216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13840841..13841035 19..213 100 <- Plus
arm_2L 13841096..13841374 214..492 100 <- Plus
arm_2L 13841444..13841489 493..538 91   Plus

BO17216.5prime Sequence

542 bp (542 high quality bases) assembled on 2006-10-13

> BO17216.5prime
GAAGTTATCAGTCGACATGCTGAAATATATTCCTTTACTTTTAGTAGCCC
AGCTATTAATAGTGGCTGCCAAGCCCACAAATCCACAACTCCTAAACTCC
GATGATCCAGTGCAAAGGGAGTTGGAGAGACAGGCCAAGGAGGAGACAGT
CCACCTGCTGAACTCGTTGTTCCGATCACAAATCGCCTATTTCTCCGAGG
TGAAGGCCGCTCTGAATCCCCAGACCAAGCGATTCCAAGATATCAGTCTT
TATATAACGCGCCTGAGCCAAGCCATTGATGAGCAGGAACTGGACCGAAA
GGATGAGCTGTGGCAGAATATCTTCGAAGAGTTCAAGGACTCTCCACTGC
TGATTAATCGGCAATCCGAGACAGGACTCACCGACTTGCAATATAAGACA
CTCCTGACCGGCCAGAAGCTGCAGAATATATCCACCAAGTTCGTGAGCGA
TGTGGCCGATTACTTCTGGGAAATGGCCAAGATTAGTGGCAAAGTCGTTG
GCAATGGGATAGCGAGCCAGAACGAAGCAAGCTTTCTAGACC

BO17216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-PA 513 CG33307-RA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-RB 1832 CG33307-RB 42..551 17..526 2550 100 Plus
CG33307-RA 586 CG33307-RA 42..551 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13841096..13841377 331..50 1410 100 Minus
2L 23513712 2L 13840841..13841037 526..330 985 100 Minus
2L 23513712 2L 13841444..13841479 52..17 180 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:42:24 has no hits.

BO17216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:04 Download gff for BO17216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-PA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:32 Download gff for BO17216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 32..551 7..526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:19 Download gff for BO17216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 32..551 7..526 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:19 Download gff for BO17216.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13840841..13841035 332..526 100 <- Minus
2L 13841096..13841374 53..331 100 <- Minus
2L 13841444..13841489 7..52 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:32 Download gff for BO17216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13840841..13841035 332..526 100 <- Minus
arm_2L 13841096..13841374 53..331 100 <- Minus
arm_2L 13841444..13841489 7..52 91   Minus

BO17216.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ634056

> BO17216.complete
GAAGTTATCAGTCGACATGCTGAAATATATTCCTTTACTTTTAGTAGCCC
AGCTATTAATAGTGGCTGCCAAGCCCACAAATCCACAACTCCTAAACTCC
GATGATCCAGTGCAAAGGGAGTTGGAGAGACAGGCCAAGGAGGAGACAGT
CCACCTGCTGAACTCGTTGTTCCGATCACAAATCGCCTATTTCTCCGAGG
TGAAGGCCGCTCTGAATCCCCAGACCAAGCGATTCCAAGATATCAGTCTT
TATATAACGCGCCTGAGCCAAGCCATTGATGAGCAGGAACTGGACCGAAA
GGATGAGCTGTGGCAGAATATCTTCGAAGAGTTCAAGGACTCTCCACTGC
TGATTAATCGGCAATCCGAGACAGGACTCACCGACTTGCAATATAAGACA
CTCCTGACCGGCCAGAAGCTGCAGAATATATCCACCAAGTTCGTGAGCGA
TGTGGCCGATTACTTCTGGGAAATGGCCAAGATTAGTGGCAAAGTCGTTG
GCAATGGGATAGCGAGCCAGAACGAAGCAAGCTTTCTAGACCAT

BO17216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-RB 513 CG33307-PB 1..510 17..526 2550 100 Plus
CG33307-RA 513 CG33307-PA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-RB 1832 CG33307-RB 42..551 17..526 2550 100 Plus
CG33307-RA 586 CG33307-RA 42..551 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13841096..13841377 331..50 1410 100 Minus
2L 23513712 2L 13840841..13841037 526..330 985 100 Minus
2L 23513712 2L 13841444..13841479 52..17 180 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:40:48 has no hits.

BO17216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:47 Download gff for BO17216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:23 Download gff for BO17216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 21..540 7..526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:13 Download gff for BO17216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 42..551 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:47 Download gff for BO17216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 21..540 7..526 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:06 Download gff for BO17216.complete
Subject Subject Range Query Range Percent Splice Strand
CG33307-RA 42..551 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:06 Download gff for BO17216.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13840839..13841035 332..528 98 <- Minus
2L 13841096..13841374 53..331 100 <- Minus
2L 13841444..13841479 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:13 Download gff for BO17216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13840839..13841035 332..528 98 <- Minus
arm_2L 13841096..13841374 53..331 100 <- Minus
arm_2L 13841444..13841479 17..52 100   Minus

BO17216.pep Sequence

Translation from 16 to 544

> BO17216.pep
MLKYIPLLLVAQLLIVAAKPTNPQLLNSDDPVQRELERQAKEETVHLLNS
LFRSQIAYFSEVKAALNPQTKRFQDISLYITRLSQAIDEQELDRKDELWQ
NIFEEFKDSPLLINRQSETGLTDLQYKTLLTGQKLQNISTKFVSDVADYF
WEMAKISGKVVGNGIASQNEASFLDH

BO17216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33307-PB 170 CG33307-PB 1..170 1..170 851 100 Plus
CG33307-PA 170 CG33307-PA 1..170 1..170 851 100 Plus