Clone Sequence Records
BO17220.3prime Sequence
752 bp (752 high quality bases) assembled on 2006-10-13
> BO17220.3prime
ATGGTCTAGAAAGCTTGCTTTGCGCTTAGCGCACGAATACGCCGTTGCCT
TGGGACAGGTAGCGGCGTGCTGGCCGAGCTGCTGGTACATCAGAAAGCCG
AAGCCGGCAAACAACAGGAACAACAGCGCCAGCGTCACGTATTGCAGGTT
CTGGGTGAATGCCAACTGACGCTCCATTGCCGTAGCTGGATCTACGCCAG
CACCGGACTTCTTGCTGCAATCCACGCTGGCCTTACTGGACTTGCTTGCG
CAATCTAGCTGCGCTTTTGATTTGTTCTCATCGAAGCGGCAGACCAGTCG
ATGCTGCTCCACATCCGCAGATGTGGGGGATTTGCTCCGCCACAGCTCGG
TCACATCGGCGCCACCGCATTCACCGCCTGGCGCGACCATAGCCATCACC
AGGAACTTATCCTTGCTGTCGTCACTAAGCTTGTGCTCCGACTTCAACCA
TATGTTGATGGTGGCCTCCTGATTGGGCTGGATGATGCCGCAACGTGGTC
GCACACGGAACTTCTCCGGCGATGTGGTTTGGATCTTGTACGTCACTGCC
GAGGTGGCAATAGACTTGATGGTCATCGTGGCTTCCGCATTCTTGGAATT
GAAGTTGACAAAATCCTTGGGATTGATGTGCAACATGCCCTCGGATGGAG
TGTGCATCTTGTTGATGTTGGTCTCCTTGAGCACCATGGGAGCGGAATCG
ACAAAGGTGACGTAACTAANACGCCCTGCCTCCGACATGTCGACTGATAA
CT
BO17220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33523-PC | 723 | CG33523-RC | 1..720 | 738..19 | 3581 | 99.8 | Minus |
CG33523-PD | 1497 | CG33523-RD | 802..1494 | 711..19 | 3465 | 100 | Minus |
CG33523-PA | 705 | CG33523-RA | 10..702 | 711..19 | 3465 | 100 | Minus |
CG33523-PB | 621 | CG33523-RB | 1..618 | 636..19 | 3090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RC | 1656 | CG33523-RC | 100..819 | 738..19 | 3589 | 99.9 | Minus |
Vap-33B-RE | 2672 | CG33523-RE | 1143..1835 | 711..19 | 3465 | 100 | Minus |
Vap-33B-RF | 2574 | CG33523-RF | 1045..1737 | 711..19 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5928702..5929040 | 536..198 | 1695 | 100 | Minus |
3L | 28110227 | 3L | 5929104..5929283 | 198..19 | 900 | 100 | Minus |
3L | 28110227 | 3L | 5928536..5928640 | 639..535 | 525 | 100 | Minus |
3L | 28110227 | 3L | 5928224..5928297 | 711..638 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:46:50 has no hits.
BO17220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:06 Download gff for
BO17220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-PC | 1..723 | 15..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:35 Download gff for
BO17220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RC | 100..827 | 10..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:15 Download gff for
BO17220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RC | 100..827 | 10..738 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:15 Download gff for
BO17220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5927881..5927907 | 712..738 | 96 | -> | Minus |
3L | 5928224..5928296 | 639..711 | 100 | -> | Minus |
3L | 5928537..5928640 | 535..638 | 100 | -> | Minus |
3L | 5928704..5929039 | 199..534 | 100 | -> | Minus |
3L | 5929104..5929291 | 10..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:35 Download gff for
BO17220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5920981..5921007 | 712..738 | 96 | -> | Minus |
arm_3L | 5921324..5921396 | 639..711 | 100 | -> | Minus |
arm_3L | 5921637..5921740 | 535..638 | 100 | -> | Minus |
arm_3L | 5921804..5922139 | 199..534 | 100 | -> | Minus |
arm_3L | 5922204..5922391 | 10..198 | 97 | | Minus |
BO17220.5prime Sequence
752 bp (752 high quality bases) assembled on 2006-10-13
> BO17220.5prime
GAAGTTATCAGTCGACATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCT
TTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATG
CACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAA
CTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCA
CCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTTCCGT
GTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAA
CATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAAGT
TCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGAT
GTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGGAGCA
GCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAG
ATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCC
GGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGGCATTCAC
CCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCG
GCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGT
CCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAAGCAAGCTTTCTAGA
CC
BO17220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33523-PC | 723 | CG33523-RC | 1..720 | 17..736 | 3600 | 100 | Plus |
CG33523-PD | 1497 | CG33523-RD | 802..1494 | 44..736 | 3465 | 100 | Plus |
CG33523-PA | 705 | CG33523-RA | 10..702 | 44..736 | 3465 | 100 | Plus |
CG33523-PB | 621 | CG33523-RB | 1..618 | 119..736 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RC | 1656 | CG33523-RC | 100..819 | 17..736 | 3600 | 100 | Plus |
Vap-33B-RE | 2672 | CG33523-RE | 1143..1835 | 44..736 | 3465 | 100 | Plus |
Vap-33B-RF | 2574 | CG33523-RF | 1045..1737 | 44..736 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5928702..5929040 | 219..557 | 1695 | 100 | Plus |
3L | 28110227 | 3L | 5929104..5929283 | 557..736 | 900 | 100 | Plus |
3L | 28110227 | 3L | 5928536..5928640 | 116..220 | 525 | 100 | Plus |
3L | 28110227 | 3L | 5928224..5928297 | 44..117 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:04:36 has no hits.
BO17220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:06 Download gff for
BO17220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-PC | 1..723 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:30 Download gff for
BO17220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RC | 100..827 | 17..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:08 Download gff for
BO17220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RC | 100..827 | 17..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:08 Download gff for
BO17220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5929104..5929291 | 557..745 | 97 | | Plus |
3L | 5927881..5927907 | 17..43 | 100 | -> | Plus |
3L | 5928224..5928296 | 44..116 | 100 | -> | Plus |
3L | 5928537..5928640 | 117..220 | 100 | -> | Plus |
3L | 5928704..5929039 | 221..556 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:30 Download gff for
BO17220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5920981..5921007 | 17..43 | 100 | -> | Plus |
arm_3L | 5921324..5921396 | 44..116 | 100 | -> | Plus |
arm_3L | 5921637..5921740 | 117..220 | 100 | -> | Plus |
arm_3L | 5921804..5922139 | 221..556 | 100 | -> | Plus |
arm_3L | 5922204..5922391 | 557..745 | 97 | | Plus |
BO17220.complete Sequence
754 bp assembled on 2006-10-11
GenBank Submission: FJ634057
> BO17220.complete
GAAGTTATCAGTCGACATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCT
TTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATG
CACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAA
CTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCA
CCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTTCCGT
GTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAA
CATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAAGT
TCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGAT
GTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGGAGCA
GCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAG
ATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCC
GGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGGCATTCAC
CCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCG
GCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGT
CCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAAGCAAGCTTTCTAGA
CCAT
BO17220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RC | 723 | CG33523-PC | 1..720 | 17..736 | 3600 | 100 | Plus |
Vap-33B-RF | 1965 | CG33523-PF | 802..1494 | 44..736 | 3465 | 100 | Plus |
Vap-33B-RA | 705 | CG33523-PA | 10..702 | 44..736 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RC | 1656 | CG33523-RC | 100..819 | 17..736 | 3600 | 100 | Plus |
Vap-33B-RE | 2672 | CG33523-RE | 1143..1835 | 44..736 | 3465 | 100 | Plus |
Vap-33B-RF | 2574 | CG33523-RF | 1045..1737 | 44..736 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5928702..5929040 | 219..557 | 1695 | 100 | Plus |
3L | 28110227 | 3L | 5929104..5929283 | 557..736 | 900 | 100 | Plus |
3L | 28110227 | 3L | 5928536..5928640 | 116..220 | 525 | 100 | Plus |
3L | 28110227 | 3L | 5928224..5928297 | 44..117 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:03:22 has no hits.
BO17220.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:48 Download gff for
BO17220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RC | 1..723 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:05 Download gff for
BO17220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RC | 100..827 | 17..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:20 Download gff for
BO17220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RC | 100..819 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:49 Download gff for
BO17220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RC | 100..827 | 17..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:40 Download gff for
BO17220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RC | 100..819 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:40 Download gff for
BO17220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5927881..5927907 | 17..43 | 100 | -> | Plus |
3L | 5928224..5928296 | 44..116 | 100 | -> | Plus |
3L | 5928537..5928640 | 117..220 | 100 | -> | Plus |
3L | 5928704..5929039 | 221..556 | 100 | -> | Plus |
3L | 5929104..5929283 | 557..738 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:20 Download gff for
BO17220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5920981..5921007 | 17..43 | 100 | -> | Plus |
arm_3L | 5921324..5921396 | 44..116 | 100 | -> | Plus |
arm_3L | 5921637..5921740 | 117..220 | 100 | -> | Plus |
arm_3L | 5921804..5922139 | 221..556 | 100 | -> | Plus |
arm_3L | 5922204..5922383 | 557..738 | 98 | | Plus |
BO17220.pep Sequence
Translation from 16 to 754
> BO17220.pep
MSEAGRFSYVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVNFNSKN
AEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATINIWLKS
EHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQHRLVC
RFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFTQNLQY
VTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRKASFLDH
BO17220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-PC | 240 | CG33523-PC | 1..240 | 1..240 | 1243 | 100 | Plus |
Vap-33B-PF | 654 | CG33523-PF | 268..502 | 10..244 | 1198 | 98.7 | Plus |
Vap-33B-PA | 234 | CG33523-PA | 4..234 | 10..240 | 1197 | 100 | Plus |
Vap-33B-PD | 498 | CG33523-PD | 268..498 | 10..240 | 1197 | 100 | Plus |
Vap-33B-PB | 206 | CG33523-PB | 1..206 | 35..240 | 1068 | 100 | Plus |