Clone BO17220 Report

Search the DGRC for BO17220

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG33523-RC
Protein status:BO17220.pep: validated full length
Sequenced Size:754

Clone Sequence Records

BO17220.3prime Sequence

752 bp (752 high quality bases) assembled on 2006-10-13

> BO17220.3prime
ATGGTCTAGAAAGCTTGCTTTGCGCTTAGCGCACGAATACGCCGTTGCCT
TGGGACAGGTAGCGGCGTGCTGGCCGAGCTGCTGGTACATCAGAAAGCCG
AAGCCGGCAAACAACAGGAACAACAGCGCCAGCGTCACGTATTGCAGGTT
CTGGGTGAATGCCAACTGACGCTCCATTGCCGTAGCTGGATCTACGCCAG
CACCGGACTTCTTGCTGCAATCCACGCTGGCCTTACTGGACTTGCTTGCG
CAATCTAGCTGCGCTTTTGATTTGTTCTCATCGAAGCGGCAGACCAGTCG
ATGCTGCTCCACATCCGCAGATGTGGGGGATTTGCTCCGCCACAGCTCGG
TCACATCGGCGCCACCGCATTCACCGCCTGGCGCGACCATAGCCATCACC
AGGAACTTATCCTTGCTGTCGTCACTAAGCTTGTGCTCCGACTTCAACCA
TATGTTGATGGTGGCCTCCTGATTGGGCTGGATGATGCCGCAACGTGGTC
GCACACGGAACTTCTCCGGCGATGTGGTTTGGATCTTGTACGTCACTGCC
GAGGTGGCAATAGACTTGATGGTCATCGTGGCTTCCGCATTCTTGGAATT
GAAGTTGACAAAATCCTTGGGATTGATGTGCAACATGCCCTCGGATGGAG
TGTGCATCTTGTTGATGTTGGTCTCCTTGAGCACCATGGGAGCGGAATCG
ACAAAGGTGACGTAACTAANACGCCCTGCCTCCGACATGTCGACTGATAA
CT

BO17220.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PC 723 CG33523-RC 1..720 738..19 3581 99.8 Minus
CG33523-PD 1497 CG33523-RD 802..1494 711..19 3465 100 Minus
CG33523-PA 705 CG33523-RA 10..702 711..19 3465 100 Minus
CG33523-PB 621 CG33523-RB 1..618 636..19 3090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RC 1656 CG33523-RC 100..819 738..19 3589 99.9 Minus
Vap-33B-RE 2672 CG33523-RE 1143..1835 711..19 3465 100 Minus
Vap-33B-RF 2574 CG33523-RF 1045..1737 711..19 3465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 536..198 1695 100 Minus
3L 28110227 3L 5929104..5929283 198..19 900 100 Minus
3L 28110227 3L 5928536..5928640 639..535 525 100 Minus
3L 28110227 3L 5928224..5928297 711..638 370 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:46:50 has no hits.

BO17220.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:06 Download gff for BO17220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-PC 1..723 15..738 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:35 Download gff for BO17220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 10..738 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:15 Download gff for BO17220.3prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RC 100..827 10..738 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:15 Download gff for BO17220.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5927881..5927907 712..738 96 -> Minus
3L 5928224..5928296 639..711 100 -> Minus
3L 5928537..5928640 535..638 100 -> Minus
3L 5928704..5929039 199..534 100 -> Minus
3L 5929104..5929291 10..198 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:35 Download gff for BO17220.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5920981..5921007 712..738 96 -> Minus
arm_3L 5921324..5921396 639..711 100 -> Minus
arm_3L 5921637..5921740 535..638 100 -> Minus
arm_3L 5921804..5922139 199..534 100 -> Minus
arm_3L 5922204..5922391 10..198 97   Minus

BO17220.5prime Sequence

752 bp (752 high quality bases) assembled on 2006-10-13

> BO17220.5prime
GAAGTTATCAGTCGACATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCT
TTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATG
CACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAA
CTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCA
CCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTTCCGT
GTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAA
CATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAAGT
TCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGAT
GTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGGAGCA
GCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAG
ATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCC
GGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGGCATTCAC
CCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCG
GCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGT
CCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAAGCAAGCTTTCTAGA
CC

BO17220.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PC 723 CG33523-RC 1..720 17..736 3600 100 Plus
CG33523-PD 1497 CG33523-RD 802..1494 44..736 3465 100 Plus
CG33523-PA 705 CG33523-RA 10..702 44..736 3465 100 Plus
CG33523-PB 621 CG33523-RB 1..618 119..736 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RC 1656 CG33523-RC 100..819 17..736 3600 100 Plus
Vap-33B-RE 2672 CG33523-RE 1143..1835 44..736 3465 100 Plus
Vap-33B-RF 2574 CG33523-RF 1045..1737 44..736 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 219..557 1695 100 Plus
3L 28110227 3L 5929104..5929283 557..736 900 100 Plus
3L 28110227 3L 5928536..5928640 116..220 525 100 Plus
3L 28110227 3L 5928224..5928297 44..117 370 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:04:36 has no hits.

BO17220.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:06 Download gff for BO17220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-PC 1..723 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:30 Download gff for BO17220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 17..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:08 Download gff for BO17220.5prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RC 100..827 17..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:08 Download gff for BO17220.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5929104..5929291 557..745 97   Plus
3L 5927881..5927907 17..43 100 -> Plus
3L 5928224..5928296 44..116 100 -> Plus
3L 5928537..5928640 117..220 100 -> Plus
3L 5928704..5929039 221..556 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:30 Download gff for BO17220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5920981..5921007 17..43 100 -> Plus
arm_3L 5921324..5921396 44..116 100 -> Plus
arm_3L 5921637..5921740 117..220 100 -> Plus
arm_3L 5921804..5922139 221..556 100 -> Plus
arm_3L 5922204..5922391 557..745 97   Plus

BO17220.complete Sequence

754 bp assembled on 2006-10-11

GenBank Submission: FJ634057

> BO17220.complete
GAAGTTATCAGTCGACATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCT
TTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATG
CACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAA
CTTCAATTCCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCA
CCTCGGCAGTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTTCCGT
GTGCGACCACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAA
CATATGGTTGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAAGT
TCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGAT
GTGACCGAGCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGGAGCA
GCATCGACTGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAG
ATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCC
GGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCGTCAGTTGGCATTCAC
CCAGAACCTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCG
GCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGT
CCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAAAGCAAGCTTTCTAGA
CCAT

BO17220.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RC 723 CG33523-PC 1..720 17..736 3600 100 Plus
Vap-33B-RF 1965 CG33523-PF 802..1494 44..736 3465 100 Plus
Vap-33B-RA 705 CG33523-PA 10..702 44..736 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RC 1656 CG33523-RC 100..819 17..736 3600 100 Plus
Vap-33B-RE 2672 CG33523-RE 1143..1835 44..736 3465 100 Plus
Vap-33B-RF 2574 CG33523-RF 1045..1737 44..736 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 219..557 1695 100 Plus
3L 28110227 3L 5929104..5929283 557..736 900 100 Plus
3L 28110227 3L 5928536..5928640 116..220 525 100 Plus
3L 28110227 3L 5928224..5928297 44..117 370 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:03:22 has no hits.

BO17220.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:48 Download gff for BO17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 1..723 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:05 Download gff for BO17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 17..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:20 Download gff for BO17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..819 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:49 Download gff for BO17220.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RC 100..827 17..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:40 Download gff for BO17220.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RC 100..819 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:40 Download gff for BO17220.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5927881..5927907 17..43 100 -> Plus
3L 5928224..5928296 44..116 100 -> Plus
3L 5928537..5928640 117..220 100 -> Plus
3L 5928704..5929039 221..556 100 -> Plus
3L 5929104..5929283 557..738 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:20 Download gff for BO17220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5920981..5921007 17..43 100 -> Plus
arm_3L 5921324..5921396 44..116 100 -> Plus
arm_3L 5921637..5921740 117..220 100 -> Plus
arm_3L 5921804..5922139 221..556 100 -> Plus
arm_3L 5922204..5922383 557..738 98   Plus

BO17220.pep Sequence

Translation from 16 to 754

> BO17220.pep
MSEAGRFSYVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVNFNSKN
AEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATINIWLKS
EHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQHRLVC
RFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFTQNLQY
VTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRKASFLDH

BO17220.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-PC 240 CG33523-PC 1..240 1..240 1243 100 Plus
Vap-33B-PF 654 CG33523-PF 268..502 10..244 1198 98.7 Plus
Vap-33B-PA 234 CG33523-PA 4..234 10..240 1197 100 Plus
Vap-33B-PD 498 CG33523-PD 268..498 10..240 1197 100 Plus
Vap-33B-PB 206 CG33523-PB 1..206 35..240 1068 100 Plus