Clone Sequence Records
BO17221.5prime Sequence
239 bp (239 high quality bases) assembled on 2006-10-13
> BO17221.5prime
GAAGTTATCAGTCGACATGCAGATCAAGTTCCTGTACCTCTTCCTGGCTG
TGATGACCATCTTCATCCTGGGCGCCAAGGAAGCCGATGCCGACTGTCTC
TCTGGAAGATACGGAGGACCCTGCGCCGTCTGGGACAACGAGACCTGTCG
TCGGGTGTGCAAGGAGGAAGGACGATCCAGTGGCCACTGCAGTCCCAGTC
TGAAGTGCTGGTGCGAGGGATGCGCAAGCTTTCTAGACC
BO17221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10812-PA | 210 | dro5-RA | 1..207 | 17..223 | 1035 | 100 | Plus |
| CG10810-PA | 213 | Drs-RA | 106..210 | 119..223 | 375 | 94.2 | Plus |
| CG32268-PA | 219 | dro6-RA | 50..131 | 63..144 | 235 | 91.4 | Plus |
| CG32279-PA | 213 | dro2-RA | 165..210 | 178..223 | 180 | 95.6 | Plus |
| CG32282-PA | 216 | dro4-RA | 168..206 | 178..216 | 145 | 94.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drsl5-RA | 364 | CG10812-RA | 53..261 | 15..223 | 1045 | 100 | Plus |
| Drs-RA | 387 | CG10810-RA | 116..273 | 66..223 | 550 | 89.9 | Plus |
| Drsl6-RA | 387 | CG32268-RA | 60..272 | 17..223 | 455 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3316833..3317041 | 15..223 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 3369671..3369828 | 66..223 | 550 | 89.9 | Plus |
| 3L | 28110227 | 3L | 3314379..3314584 | 18..223 | 445 | 81.1 | Plus |
| 3L | 28110227 | 3L | 3336147..3336359 | 223..17 | 415 | 80.8 | Minus |
| 3L | 28110227 | 3L | 3315784..3315842 | 158..216 | 205 | 89.8 | Plus |
| 3L | 28110227 | 3L | 3335582..3335639 | 223..166 | 185 | 87.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:42:43 has no hits.
BO17221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:08 Download gff for
BO17221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10812-PA | 1..210 | 17..224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:36 Download gff for
BO17221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl5-RA | 53..266 | 15..229 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:04 Download gff for
BO17221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl5-RA | 53..266 | 15..229 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:04 Download gff for
BO17221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3316833..3317046 | 15..229 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:36 Download gff for
BO17221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3316833..3317046 | 15..229 | 98 | | Plus |
BO17221.3prime Sequence
239 bp (239 high quality bases) assembled on 2006-10-13
> BO17221.3prime
ATGGTCTAGAAAGCTTGCGCATCCCTCGCACCAGCACTTCAGACTGGGAC
TGCAGTGGCCACTGGATCGTCCTTCCTCCTTGCACACCCGACGACAGGTC
TCGTTGTCCCAGACGGCGCAGGGTCCTCCGTATCTTCCAGAGAGACAGTC
GGCATCGGCTTCCTTGGCGCCCAGGATGAAGATGGTCATCACAGCCAGGA
AGAGGTACAGGAACTTGATCTGCATGTCGACTGATAACT
BO17221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10812-PA | 210 | dro5-RA | 1..207 | 225..19 | 1035 | 100 | Minus |
| CG10810-PA | 213 | Drs-RA | 106..210 | 123..19 | 375 | 94.2 | Minus |
| CG32268-PA | 219 | dro6-RA | 50..131 | 179..98 | 235 | 91.4 | Minus |
| CG32279-PA | 213 | dro2-RA | 165..210 | 64..19 | 180 | 95.6 | Minus |
| CG32282-PA | 216 | dro4-RA | 168..206 | 64..26 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drsl5-RA | 364 | CG10812-RA | 53..261 | 227..19 | 1045 | 100 | Minus |
| Drs-RA | 387 | CG10810-RA | 116..273 | 176..19 | 550 | 89.9 | Minus |
| Drsl6-RA | 387 | CG32268-RA | 60..272 | 225..19 | 455 | 82.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3316833..3317041 | 227..19 | 1045 | 100 | Minus |
| 3L | 28110227 | 3L | 3369671..3369828 | 176..19 | 550 | 89.9 | Minus |
| 3L | 28110227 | 3L | 3314379..3314584 | 224..19 | 445 | 81.1 | Minus |
| 3L | 28110227 | 3L | 3336147..3336359 | 19..225 | 415 | 80.8 | Plus |
| 3L | 28110227 | 3L | 3315784..3315842 | 84..26 | 205 | 89.8 | Minus |
| 3L | 28110227 | 3L | 3335582..3335639 | 19..76 | 185 | 87.9 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:11:22 has no hits.
BO17221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:07 Download gff for
BO17221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10812-PA | 1..210 | 18..225 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:35 Download gff for
BO17221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl5-RA | 53..266 | 13..227 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:14 Download gff for
BO17221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl5-RA | 53..266 | 13..227 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:14 Download gff for
BO17221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3316833..3317046 | 13..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:35 Download gff for
BO17221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3316833..3317046 | 13..227 | 98 | | Minus |
BO17221.complete Sequence
241 bp assembled on 2006-10-11
GenBank Submission: FJ634058
> BO17221.complete
GAAGTTATCAGTCGACATGCAGATCAAGTTCCTGTACCTCTTCCTGGCTG
TGATGACCATCTTCATCCTGGGCGCCAAGGAAGCCGATGCCGACTGTCTC
TCTGGAAGATACGGAGGACCCTGCGCCGTCTGGGACAACGAGACCTGTCG
TCGGGTGTGCAAGGAGGAAGGACGATCCAGTGGCCACTGCAGTCCCAGTC
TGAAGTGCTGGTGCGAGGGATGCGCAAGCTTTCTAGACCAT
BO17221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drsl5-RA | 210 | CG10812-PA | 1..207 | 17..223 | 1035 | 100 | Plus |
| Drs-RA | 213 | CG10810-PA | 53..210 | 66..223 | 550 | 89.9 | Plus |
| Drsl2-RA | 213 | CG32279-PA | 5..210 | 18..223 | 445 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drsl5-RA | 364 | CG10812-RA | 53..261 | 15..223 | 1045 | 100 | Plus |
| Drs-RA | 387 | CG10810-RA | 116..273 | 66..223 | 550 | 89.9 | Plus |
| Drsl2-RA | 333 | CG32279-RA | 31..236 | 18..223 | 445 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3316833..3317041 | 15..223 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 3369671..3369828 | 66..223 | 550 | 89.9 | Plus |
| 3L | 28110227 | 3L | 3314379..3314584 | 18..223 | 445 | 81.1 | Plus |
| 3L | 28110227 | 3L | 3336147..3336359 | 223..17 | 415 | 80.8 | Minus |
| 3L | 28110227 | 3L | 3315784..3315842 | 158..216 | 205 | 89.8 | Plus |
| 3L | 28110227 | 3L | 3335582..3335639 | 223..166 | 185 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:51:21 has no hits.
BO17221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:49 Download gff for
BO17221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dro5-RA | 1..210 | 17..224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:06 Download gff for
BO17221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dro5-RA | 25..238 | 15..229 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:46:11 Download gff for
BO17221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl5-RA | 55..261 | 17..225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:50 Download gff for
BO17221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dro5-RA | 25..238 | 15..229 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:05:11 Download gff for
BO17221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drsl5-RA | 55..261 | 17..225 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:05:11 Download gff for
BO17221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3316835..3317041 | 17..225 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:46:11 Download gff for
BO17221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3316835..3317041 | 17..225 | 99 | | Plus |
BO17221.pep Sequence
Translation from 16 to 241
> BO17221.pep
MQIKFLYLFLAVMTIFILGAKEADADCLSGRYGGPCAVWDNETCRRVCKE
EGRSSGHCSPSLKCWCEGCASFLDH
BO17221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drsl5-PA | 69 | CG10812-PA | 1..69 | 1..69 | 392 | 100 | Plus |
| Drs-PA | 70 | CG10810-PA | 2..70 | 1..69 | 338 | 82.6 | Plus |
| Drsl2-PA | 70 | CG32279-PA | 2..70 | 1..69 | 326 | 79.7 | Plus |
| Drsl6-PA | 72 | CG32268-PA | 2..72 | 1..69 | 316 | 78.9 | Plus |
| Drsl1-PA | 69 | CG32274-PA | 1..69 | 1..69 | 266 | 65.2 | Plus |
