Clone Sequence Records
BO17222.3prime Sequence
875 bp (772 high quality bases) assembled on 2006-10-13
> BO17222.3prime
ATGGTCTAGAAAGCTTGCAGAGCTGACCGGCTCGGGCAGTGGGTTCTCTG
TGATGCGTATCTTGTTGCTCTGGGTGCCGTAGTAAAGCGTGCCCGATGTG
TCCGTGGTCACGTAGGCTCGGTTGCCATTACCGGTTCCTGTTCCGTTGCC
GCCGGCACATCCGTTTCCGTTCTCCAGATCCTGGTCGTCCCCGTCGACGC
TGCGACCATCCGCATTATTATTGTCCCCCTGGCCGGCGGTGGTGTTGGAG
TTGCTGCTGGTGCAATTGATGGCCGTCTCCCGAAGGCGATTGCCAACGCG
AAGGCTCAGCTGCCGCTGGCGATCCCGCTCCCTTTCCCGCTCACGATCGC
GCTCCTCCATCGCCTGCTGCTGCTGCTCCCGGAAGTTGGCAAAGAAGATG
GAGGAGTAGGTGTGGTATTTAGTTCCACAGGGCGAACTCGCTGGCGTGGA
CAGCGGCGTTGCGTAGCCCTCGCCCTGCAAGAAGAGCCGGAAGGCCTCGG
CCAGCTTAGCCGGCTGCTCCTCCAGCACCAAAGCGCAATCGGAAATCTTC
ATCCACGATGAGTTTGTAGGATCTAGACGGCCATTGAAGGTCACCGTGTC
GTCGACGTGCGGCGAGAGCGAACCTGTGATATTGATCACCGGCATCTTCA
GCGTGGTGGCCGCCGTTTCGCTGCCCGGAGTACCTGGCGGAGTGCGTGCC
AGATGCAGGTCGTTACGATGGATGTACGCGTTGATCAGCATGGCAAGATT
GGTCGGATTAACGCCACGCTCGAAGTGCTGCTTGTACATCTGCACCAGGT
CGTGATTGCGCTCCTCCGGATTGCGTCCGAAGTGGTGCCACATCAGATAA
TCGATCACGCCCTGTGTCATGCCTT
BO17222.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15669-PJ | 1407 | MESK2-RJ | 550..1404 | 873..19 | 4275 | 100 | Minus |
CG15669-PI | 1458 | MESK2-RI | 601..1455 | 873..19 | 4275 | 100 | Minus |
CG15669-PA | 1344 | MESK2-RA | 847..1259 | 873..461 | 2065 | 100 | Minus |
CG15669-PF | 1344 | MESK2-RF | 847..1259 | 873..461 | 2065 | 100 | Minus |
CG15669-PD | 1098 | MESK2-RD | 601..1013 | 873..461 | 2065 | 100 | Minus |
CG15669-PE | 1344 | MESK2-RE | 847..1259 | 873..461 | 2065 | 100 | Minus |
CG15669-PB | 1278 | MESK2-RB | 847..1258 | 873..462 | 2060 | 100 | Minus |
CG15669-PK | 1230 | MESK2-RK | 763..1174 | 873..462 | 2060 | 100 | Minus |
CG15669-PC | 1314 | MESK2-RC | 847..1258 | 873..462 | 2060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RI | 2798 | CG15669-RI | 1033..1887 | 873..19 | 4275 | 100 | Minus |
MESK2-RJ | 2702 | CG15669-RJ | 937..1791 | 873..19 | 4275 | 100 | Minus |
MESK2-RE | 2619 | CG15669-RE | 1422..1834 | 873..461 | 2065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21515887..21516330 | 462..19 | 2220 | 100 | Minus |
2R | 25286936 | 2R | 21511642..21511968 | 873..547 | 1635 | 100 | Minus |
2R | 25286936 | 2R | 21512091..21512177 | 548..462 | 435 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2493..2532 | 271..232 | 128 | 80 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6570..6627 | 289..232 | 119 | 67.2 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 8026..8083 | 289..232 | 119 | 67.2 | Minus |
BO17222.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:08 Download gff for
BO17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15669-PI | 598..1458 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:09 Download gff for
BO17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RJ | 934..1797 | 11..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:38 Download gff for
BO17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RJ | 934..1797 | 11..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:38 Download gff for
BO17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21511639..21511968 | 547..875 | 99 | -> | Minus |
2R | 21512093..21512177 | 462..546 | 100 | -> | Minus |
2R | 21515888..21516336 | 11..461 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:09 Download gff for
BO17222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17399144..17399473 | 547..875 | 99 | -> | Minus |
arm_2R | 17399598..17399682 | 462..546 | 100 | -> | Minus |
arm_2R | 17403393..17403841 | 11..461 | 99 | | Minus |
BO17222.5prime Sequence
832 bp (692 high quality bases) assembled on 2006-10-13
> BO17222.5prime
GAAGTTATCAGTCGACATGCCGTCAGCTCCAACACACACTGCCGAGGAGG
CACATCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTG
CGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGC
CTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCA
TACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGC
CTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCG
AGGTCTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGG
AGGAGGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGAT
GATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTC
GGTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCG
CTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTG
TCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCG
CTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGT
GGCACCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAG
ATGTACAAGCAGCACTTCGAGCGTGGCGTTGATCCGACCAATCTTGCCAT
GCTGATCAACGCGTACAATCCATCGTAACGACCTGCATCTGGCACGCACT
CCGCCAGGTACTCCGGGCAGCGAAACGGGGGC
BO17222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15669-PB | 1278 | MESK2-RB | 247..997 | 17..767 | 3730 | 99.8 | Plus |
CG15669-PA | 1344 | MESK2-RA | 247..997 | 17..767 | 3730 | 99.8 | Plus |
CG15669-PF | 1344 | MESK2-RF | 247..997 | 17..767 | 3730 | 99.8 | Plus |
CG15669-PD | 1098 | MESK2-RD | 1..751 | 17..767 | 3730 | 99.8 | Plus |
CG15669-PE | 1344 | MESK2-RE | 247..997 | 17..767 | 3730 | 99.8 | Plus |
CG15669-PI | 1458 | MESK2-RI | 1..751 | 17..767 | 3730 | 99.8 | Plus |
CG15669-PC | 1314 | MESK2-RC | 247..997 | 17..767 | 3730 | 99.8 | Plus |
CG15669-PK | 1230 | MESK2-RK | 209..913 | 63..767 | 3500 | 99.8 | Plus |
CG15669-PJ | 1407 | MESK2-RJ | 1..700 | 68..767 | 3475 | 99.8 | Plus |
CG15669-PB | 1278 | MESK2-RB | 997..1057 | 768..828 | 305 | 100 | Plus |
CG15669-PA | 1344 | MESK2-RA | 997..1057 | 768..828 | 305 | 100 | Plus |
CG15669-PF | 1344 | MESK2-RF | 997..1057 | 768..828 | 305 | 100 | Plus |
CG15669-PD | 1098 | MESK2-RD | 751..811 | 768..828 | 305 | 100 | Plus |
CG15669-PE | 1344 | MESK2-RE | 997..1057 | 768..828 | 305 | 100 | Plus |
CG15669-PI | 1458 | MESK2-RI | 751..811 | 768..828 | 305 | 100 | Plus |
CG15669-PC | 1314 | MESK2-RC | 997..1057 | 768..828 | 305 | 100 | Plus |
CG15669-PK | 1230 | MESK2-RK | 913..973 | 768..828 | 305 | 100 | Plus |
CG15669-PJ | 1407 | MESK2-RJ | 700..760 | 768..828 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RC | 2193 | CG15669-RC | 849..1663 | 17..832 | 4025 | 99.6 | Plus |
MESK2-RI | 2798 | CG15669-RI | 433..1247 | 17..832 | 4025 | 99.6 | Plus |
MESK2-RE | 2619 | CG15669-RE | 822..1636 | 17..832 | 4025 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:19:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21511404..21511856 | 379..832 | 2190 | 99.3 | Plus |
2R | 25286936 | 2R | 21510866..21511060 | 63..257 | 975 | 100 | Plus |
2R | 25286936 | 2R | 21511123..21511243 | 258..378 | 605 | 100 | Plus |
2R | 25286936 | 2R | 21510155..21510201 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:19:29 has no hits.
BO17222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:09 Download gff for
BO17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15669-PI | 1..815 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:47 Download gff for
BO17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RE | 815..1636 | 9..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:51 Download gff for
BO17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RE | 815..1636 | 9..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:51 Download gff for
BO17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21510148..21510201 | 9..63 | 92 | -> | Plus |
2R | 21510867..21511060 | 64..257 | 100 | -> | Plus |
2R | 21511123..21511243 | 258..378 | 100 | -> | Plus |
2R | 21511404..21511856 | 379..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:47 Download gff for
BO17222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17397653..17397706 | 9..63 | 92 | -> | Plus |
arm_2R | 17398372..17398565 | 64..257 | 100 | -> | Plus |
arm_2R | 17398628..17398748 | 258..378 | 100 | -> | Plus |
arm_2R | 17398909..17399361 | 379..832 | 99 | | Plus |
BO17222.complete Sequence
1489 bp assembled on 2006-10-11
GenBank Submission: FJ634059
> BO17222.complete
GAAGTTATCAGTCGACATGCCGTCAGCTCCAACACACACTGCCGAGGAGG
CACATCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTG
CGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGC
CTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCA
TACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGC
CTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCG
AGGTCTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGG
AGGAGGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGAT
GATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTC
GGTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCG
CTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTG
TCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCG
CTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGT
GGCACCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAG
ATGTACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCAT
GCTGATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTC
CGCCAGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCG
GTGATCAATATCACAGGTTCGCTCTCGCCGCACGTCGACGACACGGTGAC
CTTCAATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCG
ATTGCGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTC
CGGCTCTTCTTGCAGGGCGAGGGCTACGCAACGCCGCTGTCCACGCCAGC
GAGTTCGCCCTGTGGAACTAAATACCACACCTACTCCTCCATCTTCTTTG
CCAACTTCCGGGAGCAGCAGCAGCAGGCGATGGAGGAGCGCGATCGTGAG
CGGGAAAGGGAGCGGGATCGCCAGCGGCAGCTGAGCCTTCGCGTTGGCAA
TCGCCTTCGGGAGACGGCCATCAATTGCACCAGCAGCAACTCCAACACCA
CCGCCGGCCAGGGGGACAATAATAATGCGGATGGTCGCAGCGTCGACGGG
GACGACCAGGATCTGGAGAACGGAAACGGATGTGCCGGCGGCAACGGAAC
AGGAACCGGTAATGGCAACCGAGCCTACGTGACCACGGACACATCGGGCA
CGCTTTACTACGGCACCCAGAGCAACAAGATACGCATCACAGAGAACCCA
CTGCCCGAGCCGGTCAGCTCTGCAAGCTTTCTAGACCAT
BO17222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RI | 1458 | CG15669-PI | 1..1455 | 17..1471 | 7275 | 100 | Plus |
MESK2-RJ | 1407 | CG15669-PJ | 1..1404 | 68..1471 | 7020 | 100 | Plus |
MESK2-RE | 1344 | CG15669-PE | 247..1259 | 17..1029 | 5065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-RI | 2798 | CG15669-RI | 433..1887 | 17..1471 | 7275 | 100 | Plus |
MESK2-RJ | 2702 | CG15669-RJ | 383..1791 | 63..1471 | 7045 | 100 | Plus |
MESK2-RE | 2619 | CG15669-RE | 822..1834 | 17..1029 | 5065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21511404..21511968 | 379..943 | 2825 | 100 | Plus |
2R | 25286936 | 2R | 21515887..21516330 | 1028..1471 | 2220 | 100 | Plus |
2R | 25286936 | 2R | 21510866..21511060 | 63..257 | 975 | 100 | Plus |
2R | 25286936 | 2R | 21511123..21511243 | 258..378 | 605 | 100 | Plus |
2R | 25286936 | 2R | 21512091..21512177 | 942..1028 | 435 | 100 | Plus |
2R | 25286936 | 2R | 21510155..21510201 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2493..2532 | 1219..1258 | 128 | 80 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6570..6627 | 1201..1258 | 119 | 67.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8026..8083 | 1201..1258 | 119 | 67.2 | Plus |
BO17222.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:50 Download gff for
BO17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RI | 1..1458 | 17..1472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:08 Download gff for
BO17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RD | 425..1445 | 9..1028 | 99 | -> | Plus |
MESK2-RD | 3123..3571 | 1029..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:24 Download gff for
BO17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RI | 433..1887 | 17..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:51 Download gff for
BO17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RD | 425..1445 | 9..1028 | 99 | -> | Plus |
MESK2-RD | 3123..3571 | 1029..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:40 Download gff for
BO17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESK2-RI | 433..1887 | 17..1473 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:40 Download gff for
BO17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21510155..21510201 | 17..63 | 100 | -> | Plus |
2R | 21510867..21511060 | 64..257 | 100 | -> | Plus |
2R | 21511123..21511243 | 258..378 | 100 | -> | Plus |
2R | 21511404..21511968 | 379..943 | 100 | -> | Plus |
2R | 21512093..21512177 | 944..1028 | 100 | -> | Plus |
2R | 21515888..21516330 | 1029..1473 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:24 Download gff for
BO17222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17399598..17399682 | 944..1028 | 100 | -> | Plus |
arm_2R | 17403393..17403835 | 1029..1473 | 99 | | Plus |
arm_2R | 17397660..17397706 | 17..63 | 100 | -> | Plus |
arm_2R | 17398372..17398565 | 64..257 | 100 | -> | Plus |
arm_2R | 17398628..17398748 | 258..378 | 100 | -> | Plus |
arm_2R | 17398909..17399473 | 379..943 | 100 | -> | Plus |
BO17222.pep Sequence
Translation from 16 to 1489
> BO17222.pep
MPSAPTHTAEEAHLLGTMPVDPMDDIELRSVQLQFPNARGSILEACEQRR
VPTDKGDVHVAIQGDTAKPAIITYHDLGLNYATSFAGFFNFPVMRGLLEN
FCVYHVTAPGQEEGAPTLPEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFG
VGAGANILARFAHAHPDKVGALCLINCVSTQSGWIEWGYQSFNARFLRTK
GMTQGVIDYLMWHHFGRNPEERNHDLVQMYKQHFERGVNPTNLAMLINAY
IHRNDLHLARTPPGTPGSETAATTLKMPVINITGSLSPHVDDTVTFNGRL
DPTNSSWMKISDCALVLEEQPAKLAEAFRLFLQGEGYATPLSTPASSPCG
TKYHTYSSIFFANFREQQQQAMEERDRERERERDRQRQLSLRVGNRLRET
AINCTSSNSNTTAGQGDNNNADGRSVDGDDQDLENGNGCAGGNGTGTGNG
NRAYVTTDTSGTLYYGTQSNKIRITENPLPEPVSSASFLDH
BO17222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESK2-PI | 485 | CG15669-PI | 1..485 | 1..485 | 2584 | 100 | Plus |
MESK2-PJ | 468 | CG15669-PJ | 1..468 | 18..485 | 2494 | 100 | Plus |
MESK2-PD | 365 | CG15669-PD | 1..338 | 1..338 | 1806 | 100 | Plus |
MESK2-PE | 447 | CG15669-PE | 83..420 | 1..338 | 1806 | 100 | Plus |
MESK2-PF | 447 | CG15669-PF | 83..420 | 1..338 | 1806 | 100 | Plus |