Clone BO17222 Report

Search the DGRC for BO17222

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptMESK2-RI
Protein status:BO17222.pep: validated full length
Sequenced Size:1489

Clone Sequence Records

BO17222.3prime Sequence

875 bp (772 high quality bases) assembled on 2006-10-13

> BO17222.3prime
ATGGTCTAGAAAGCTTGCAGAGCTGACCGGCTCGGGCAGTGGGTTCTCTG
TGATGCGTATCTTGTTGCTCTGGGTGCCGTAGTAAAGCGTGCCCGATGTG
TCCGTGGTCACGTAGGCTCGGTTGCCATTACCGGTTCCTGTTCCGTTGCC
GCCGGCACATCCGTTTCCGTTCTCCAGATCCTGGTCGTCCCCGTCGACGC
TGCGACCATCCGCATTATTATTGTCCCCCTGGCCGGCGGTGGTGTTGGAG
TTGCTGCTGGTGCAATTGATGGCCGTCTCCCGAAGGCGATTGCCAACGCG
AAGGCTCAGCTGCCGCTGGCGATCCCGCTCCCTTTCCCGCTCACGATCGC
GCTCCTCCATCGCCTGCTGCTGCTGCTCCCGGAAGTTGGCAAAGAAGATG
GAGGAGTAGGTGTGGTATTTAGTTCCACAGGGCGAACTCGCTGGCGTGGA
CAGCGGCGTTGCGTAGCCCTCGCCCTGCAAGAAGAGCCGGAAGGCCTCGG
CCAGCTTAGCCGGCTGCTCCTCCAGCACCAAAGCGCAATCGGAAATCTTC
ATCCACGATGAGTTTGTAGGATCTAGACGGCCATTGAAGGTCACCGTGTC
GTCGACGTGCGGCGAGAGCGAACCTGTGATATTGATCACCGGCATCTTCA
GCGTGGTGGCCGCCGTTTCGCTGCCCGGAGTACCTGGCGGAGTGCGTGCC
AGATGCAGGTCGTTACGATGGATGTACGCGTTGATCAGCATGGCAAGATT
GGTCGGATTAACGCCACGCTCGAAGTGCTGCTTGTACATCTGCACCAGGT
CGTGATTGCGCTCCTCCGGATTGCGTCCGAAGTGGTGCCACATCAGATAA
TCGATCACGCCCTGTGTCATGCCTT

BO17222.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PJ 1407 MESK2-RJ 550..1404 873..19 4275 100 Minus
CG15669-PI 1458 MESK2-RI 601..1455 873..19 4275 100 Minus
CG15669-PA 1344 MESK2-RA 847..1259 873..461 2065 100 Minus
CG15669-PF 1344 MESK2-RF 847..1259 873..461 2065 100 Minus
CG15669-PD 1098 MESK2-RD 601..1013 873..461 2065 100 Minus
CG15669-PE 1344 MESK2-RE 847..1259 873..461 2065 100 Minus
CG15669-PB 1278 MESK2-RB 847..1258 873..462 2060 100 Minus
CG15669-PK 1230 MESK2-RK 763..1174 873..462 2060 100 Minus
CG15669-PC 1314 MESK2-RC 847..1258 873..462 2060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RI 2798 CG15669-RI 1033..1887 873..19 4275 100 Minus
MESK2-RJ 2702 CG15669-RJ 937..1791 873..19 4275 100 Minus
MESK2-RE 2619 CG15669-RE 1422..1834 873..461 2065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21515887..21516330 462..19 2220 100 Minus
2R 25286936 2R 21511642..21511968 873..547 1635 100 Minus
2R 25286936 2R 21512091..21512177 548..462 435 100 Minus
Blast to na_te.dros performed 2015-02-10 21:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2493..2532 271..232 128 80 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6570..6627 289..232 119 67.2 Minus
TART-C 11124 TART-C TARTC 11124bp 8026..8083 289..232 119 67.2 Minus

BO17222.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:08 Download gff for BO17222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PI 598..1458 18..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:09 Download gff for BO17222.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RJ 934..1797 11..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:38 Download gff for BO17222.3prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RJ 934..1797 11..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:38 Download gff for BO17222.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21511639..21511968 547..875 99 -> Minus
2R 21512093..21512177 462..546 100 -> Minus
2R 21515888..21516336 11..461 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:09 Download gff for BO17222.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17399144..17399473 547..875 99 -> Minus
arm_2R 17399598..17399682 462..546 100 -> Minus
arm_2R 17403393..17403841 11..461 99   Minus

BO17222.5prime Sequence

832 bp (692 high quality bases) assembled on 2006-10-13

> BO17222.5prime
GAAGTTATCAGTCGACATGCCGTCAGCTCCAACACACACTGCCGAGGAGG
CACATCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTG
CGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGC
CTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCA
TACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGC
CTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCG
AGGTCTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGG
AGGAGGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGAT
GATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTC
GGTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCG
CTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTG
TCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCG
CTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGT
GGCACCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAG
ATGTACAAGCAGCACTTCGAGCGTGGCGTTGATCCGACCAATCTTGCCAT
GCTGATCAACGCGTACAATCCATCGTAACGACCTGCATCTGGCACGCACT
CCGCCAGGTACTCCGGGCAGCGAAACGGGGGC

BO17222.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG15669-PB 1278 MESK2-RB 247..997 17..767 3730 99.8 Plus
CG15669-PA 1344 MESK2-RA 247..997 17..767 3730 99.8 Plus
CG15669-PF 1344 MESK2-RF 247..997 17..767 3730 99.8 Plus
CG15669-PD 1098 MESK2-RD 1..751 17..767 3730 99.8 Plus
CG15669-PE 1344 MESK2-RE 247..997 17..767 3730 99.8 Plus
CG15669-PI 1458 MESK2-RI 1..751 17..767 3730 99.8 Plus
CG15669-PC 1314 MESK2-RC 247..997 17..767 3730 99.8 Plus
CG15669-PK 1230 MESK2-RK 209..913 63..767 3500 99.8 Plus
CG15669-PJ 1407 MESK2-RJ 1..700 68..767 3475 99.8 Plus
CG15669-PB 1278 MESK2-RB 997..1057 768..828 305 100 Plus
CG15669-PA 1344 MESK2-RA 997..1057 768..828 305 100 Plus
CG15669-PF 1344 MESK2-RF 997..1057 768..828 305 100 Plus
CG15669-PD 1098 MESK2-RD 751..811 768..828 305 100 Plus
CG15669-PE 1344 MESK2-RE 997..1057 768..828 305 100 Plus
CG15669-PI 1458 MESK2-RI 751..811 768..828 305 100 Plus
CG15669-PC 1314 MESK2-RC 997..1057 768..828 305 100 Plus
CG15669-PK 1230 MESK2-RK 913..973 768..828 305 100 Plus
CG15669-PJ 1407 MESK2-RJ 700..760 768..828 305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RC 2193 CG15669-RC 849..1663 17..832 4025 99.6 Plus
MESK2-RI 2798 CG15669-RI 433..1247 17..832 4025 99.6 Plus
MESK2-RE 2619 CG15669-RE 822..1636 17..832 4025 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511856 379..832 2190 99.3 Plus
2R 25286936 2R 21510866..21511060 63..257 975 100 Plus
2R 25286936 2R 21511123..21511243 258..378 605 100 Plus
2R 25286936 2R 21510155..21510201 17..63 235 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:19:29 has no hits.

BO17222.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:09 Download gff for BO17222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15669-PI 1..815 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:47 Download gff for BO17222.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 815..1636 9..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:51 Download gff for BO17222.5prime
Subject Subject Range Query Range Percent Splice Strand
MESK2-RE 815..1636 9..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:51 Download gff for BO17222.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21510148..21510201 9..63 92 -> Plus
2R 21510867..21511060 64..257 100 -> Plus
2R 21511123..21511243 258..378 100 -> Plus
2R 21511404..21511856 379..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:47 Download gff for BO17222.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17397653..17397706 9..63 92 -> Plus
arm_2R 17398372..17398565 64..257 100 -> Plus
arm_2R 17398628..17398748 258..378 100 -> Plus
arm_2R 17398909..17399361 379..832 99   Plus

BO17222.complete Sequence

1489 bp assembled on 2006-10-11

GenBank Submission: FJ634059

> BO17222.complete
GAAGTTATCAGTCGACATGCCGTCAGCTCCAACACACACTGCCGAGGAGG
CACATCTGCTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTG
CGCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGC
CTGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCA
TACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGC
CTCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCG
AGGTCTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGG
AGGAGGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGAT
GATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTC
GGTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCG
CTCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTG
TCCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCG
CTTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGT
GGCACCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAG
ATGTACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCAT
GCTGATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTC
CGCCAGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCG
GTGATCAATATCACAGGTTCGCTCTCGCCGCACGTCGACGACACGGTGAC
CTTCAATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCG
ATTGCGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTC
CGGCTCTTCTTGCAGGGCGAGGGCTACGCAACGCCGCTGTCCACGCCAGC
GAGTTCGCCCTGTGGAACTAAATACCACACCTACTCCTCCATCTTCTTTG
CCAACTTCCGGGAGCAGCAGCAGCAGGCGATGGAGGAGCGCGATCGTGAG
CGGGAAAGGGAGCGGGATCGCCAGCGGCAGCTGAGCCTTCGCGTTGGCAA
TCGCCTTCGGGAGACGGCCATCAATTGCACCAGCAGCAACTCCAACACCA
CCGCCGGCCAGGGGGACAATAATAATGCGGATGGTCGCAGCGTCGACGGG
GACGACCAGGATCTGGAGAACGGAAACGGATGTGCCGGCGGCAACGGAAC
AGGAACCGGTAATGGCAACCGAGCCTACGTGACCACGGACACATCGGGCA
CGCTTTACTACGGCACCCAGAGCAACAAGATACGCATCACAGAGAACCCA
CTGCCCGAGCCGGTCAGCTCTGCAAGCTTTCTAGACCAT

BO17222.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RI 1458 CG15669-PI 1..1455 17..1471 7275 100 Plus
MESK2-RJ 1407 CG15669-PJ 1..1404 68..1471 7020 100 Plus
MESK2-RE 1344 CG15669-PE 247..1259 17..1029 5065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-RI 2798 CG15669-RI 433..1887 17..1471 7275 100 Plus
MESK2-RJ 2702 CG15669-RJ 383..1791 63..1471 7045 100 Plus
MESK2-RE 2619 CG15669-RE 822..1834 17..1029 5065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21511404..21511968 379..943 2825 100 Plus
2R 25286936 2R 21515887..21516330 1028..1471 2220 100 Plus
2R 25286936 2R 21510866..21511060 63..257 975 100 Plus
2R 25286936 2R 21511123..21511243 258..378 605 100 Plus
2R 25286936 2R 21512091..21512177 942..1028 435 100 Plus
2R 25286936 2R 21510155..21510201 17..63 235 100 Plus
Blast to na_te.dros performed 2014-11-27 15:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2493..2532 1219..1258 128 80 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6570..6627 1201..1258 119 67.2 Plus
TART-C 11124 TART-C TARTC 11124bp 8026..8083 1201..1258 119 67.2 Plus

BO17222.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:50 Download gff for BO17222.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RI 1..1458 17..1472 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:08 Download gff for BO17222.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RD 425..1445 9..1028 99 -> Plus
MESK2-RD 3123..3571 1029..1479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:24 Download gff for BO17222.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RI 433..1887 17..1473 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:51 Download gff for BO17222.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RD 425..1445 9..1028 99 -> Plus
MESK2-RD 3123..3571 1029..1479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:40 Download gff for BO17222.complete
Subject Subject Range Query Range Percent Splice Strand
MESK2-RI 433..1887 17..1473 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:40 Download gff for BO17222.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21510155..21510201 17..63 100 -> Plus
2R 21510867..21511060 64..257 100 -> Plus
2R 21511123..21511243 258..378 100 -> Plus
2R 21511404..21511968 379..943 100 -> Plus
2R 21512093..21512177 944..1028 100 -> Plus
2R 21515888..21516330 1029..1473 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:24 Download gff for BO17222.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17399598..17399682 944..1028 100 -> Plus
arm_2R 17403393..17403835 1029..1473 99   Plus
arm_2R 17397660..17397706 17..63 100 -> Plus
arm_2R 17398372..17398565 64..257 100 -> Plus
arm_2R 17398628..17398748 258..378 100 -> Plus
arm_2R 17398909..17399473 379..943 100 -> Plus

BO17222.pep Sequence

Translation from 16 to 1489

> BO17222.pep
MPSAPTHTAEEAHLLGTMPVDPMDDIELRSVQLQFPNARGSILEACEQRR
VPTDKGDVHVAIQGDTAKPAIITYHDLGLNYATSFAGFFNFPVMRGLLEN
FCVYHVTAPGQEEGAPTLPEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFG
VGAGANILARFAHAHPDKVGALCLINCVSTQSGWIEWGYQSFNARFLRTK
GMTQGVIDYLMWHHFGRNPEERNHDLVQMYKQHFERGVNPTNLAMLINAY
IHRNDLHLARTPPGTPGSETAATTLKMPVINITGSLSPHVDDTVTFNGRL
DPTNSSWMKISDCALVLEEQPAKLAEAFRLFLQGEGYATPLSTPASSPCG
TKYHTYSSIFFANFREQQQQAMEERDRERERERDRQRQLSLRVGNRLRET
AINCTSSNSNTTAGQGDNNNADGRSVDGDDQDLENGNGCAGGNGTGTGNG
NRAYVTTDTSGTLYYGTQSNKIRITENPLPEPVSSASFLDH

BO17222.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
MESK2-PI 485 CG15669-PI 1..485 1..485 2584 100 Plus
MESK2-PJ 468 CG15669-PJ 1..468 18..485 2494 100 Plus
MESK2-PD 365 CG15669-PD 1..338 1..338 1806 100 Plus
MESK2-PE 447 CG15669-PE 83..420 1..338 1806 100 Plus
MESK2-PF 447 CG15669-PF 83..420 1..338 1806 100 Plus