Clone BO17223 Report

Search the DGRC for BO17223

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:23
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO17223.pep: validated full length
Sequenced Size:1147

Clone Sequence Records

BO17223.3prime Sequence

797 bp (639 high quality bases) assembled on 2006-10-13

> BO17223.3prime
ATGGTCTAGAAAGCTTGCATGGCGGTCAGCACCACGAGAAGGAGTACCAG
GGCAGCACTCGGAACGCTGGCCGAGCTCATGGAGGCAGCCGTGGAGGTCA
GAAGGACCGTAAGGAGCTCTCCAAATCCCAGAACCATGCCGCTCATCTGG
GCAATGAATATCGATGCCACTGCGATATATAGGGCCGTTCCGTCCATGTT
GATGTTGCATCCGATTGGAAGGACAAATCGCGTGATCCGCGGATCCACCT
TGAGTTTCTCGTTCATGCAGCGGAATGTAATGGGCAGGGCAGCGGCGCTC
AAAAATGGCGGCAAAGAAGTCAACCACGACCTGACCCTTCTGGCCGATGG
TTCCCAAAAAAGTACCAAACACCAGGCAGAAGAAGACGATGCCCAGGGTG
TTGGTTCCACTGCGGTACTGGATGTCCCTCACCAGCACCACATCCTCCGT
AAGGTCTTCAGACAAGCGTTGGGCCTCCGATCCGGATGCCAAGGTGTCAT
TCATCGTTTCGTTGAAGACGTGCAGGATACTCGGCTTGGGCAAGTAGACG
GTGTGCGCCTGCTGAATGGAGGCCTGAAACAGGTTGTCCGGGAATACGTT
CCTGCCCAAATCCAAAAGACTATCTAGAAGGTTAACTGCCCGCCGATCTG
TAGATCGATCGTCCGCATTGTGCAGATCCGGATTTCCAGGATGGATGAGC
AGAACGAGAGCGATTCCCAGTGGAGCGTTAAAGAACGAAGTGCTTGGCAA
AAGTAAACCCACGTGCGCAGCGCTATCTTGCCGTTCATTTTGGCGGT

BO17223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3159-PB 1116 Eaat2-RB 388..1113 744..19 3605 99.8 Minus
CG3159-PA 1692 Eaat2-RA 340..786 744..298 2210 99.7 Minus
CG3159-PA 1692 Eaat2-RA 1053..1331 297..19 1395 100 Minus
CG3159-PB 1116 Eaat2-RB 339..384 795..750 205 97.8 Minus
CG3159-PA 1692 Eaat2-RA 291..336 795..750 205 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Eaat2-RD 3169 CG3159-RD 906..1401 795..298 2410 99.2 Minus
Eaat2-RC 3398 CG3159-RC 1135..1630 795..298 2410 99.2 Minus
Eaat2-RA 3057 CG3159-RA 794..1289 795..298 2410 99.2 Minus
Eaat2-RD 3169 CG3159-RD 1668..1946 297..19 1395 100 Minus
Eaat2-RC 3398 CG3159-RC 1897..2175 297..19 1395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 739711..740017 298..604 1535 100 Plus
2L 23513712 2L 738559..738839 19..299 1405 100 Plus
2L 23513712 2L 740356..740548 601..795 850 96.9 Plus
Blast to na_te.dros performed on 2015-02-06 10:35:37 has no hits.

BO17223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:10 Download gff for BO17223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3159-PB 337..1116 16..797 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:17 Download gff for BO17223.3prime
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RA 792..1289 298..797 99 -- Minus
Eaat2-RA 1556..1840 13..297 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:36 Download gff for BO17223.3prime
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RA 792..1289 298..797 99 -- Minus
Eaat2-RA 1556..1840 13..297 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:36 Download gff for BO17223.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 738553..738837 13..297 98 <- Plus
2L 739711..740014 298..601 100 <- Plus
2L 740357..740549 602..797 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:17 Download gff for BO17223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 738553..738837 13..297 98 <- Plus
arm_2L 739711..740014 298..601 100 <- Plus
arm_2L 740357..740549 602..797 97   Plus

BO17223.5prime Sequence

801 bp (681 high quality bases) assembled on 2006-10-13

> BO17223.5prime
GAAGTTATCAGTCGACATGGAAATGGAAAAGTCTGGCAAATTTTCAGATT
ACCTCTTCGCCAAAATGGGTCCCCCCACCTCAACTGAGCTGCCTCCGAAG
ACCACGGAATGCAGCGATGCCCCCGTGGAGTTGACCGGTTACCGCAGGTG
GCTCTCCGAGAATCTAATGCTCCTGGTCACCCTTTCCGGAGTTCTCCTTG
GTGTAATACTAGGACTCTCCTTACGGCCGCTTAATTTACATGGGGACTCC
ATCATGCTGATTTCCTATCCTGGCGAACTGTTTATGCGCGTACTCAAGCT
GATGATTTTGCCGCTAGTTATATCGAGCCTTATTGCCGGATCGGCCAGCC
TTAACGCCAAAATGAACGGCAAGATAGCGCTGCGCACGTTGGTTTACTTT
GCCAGCACTTCGTTCTTTAACGCTGCACTGGGAATCGCTCTCGTTCTGCT
CATCCATCCTGGAAATCCGGATCTGCACAATGCGGACGATCGATCTACAG
ATCGGCGGGCAGTTAACCTTCTAGATAGTCTTTTGGATTTGGGCAGGAAC
GTATTCCCGGACAACCTGTTTCAGGCCTCCATTCAGCAGGCGCACACCGT
CTACTTGCCCAAGCCGAGTATCCTGCACGTCTTCAACGAAACGATGAATG
ACACCTTGGCATCCGGATCGGAGGCCCAACGCTTGTCTGAAGACCTTACG
GAGGATGTGGTGCTGGTGAGGGACATCCAGTACCGCAGTGGAACCAACAC
CCTGGGCATCGTCTTCTTCTGCCTGGTGTTTGGTACTTTTTTGGGAACCA
T

BO17223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3159-PB 1116 Eaat2-RB 1..785 17..801 3925 100 Plus
CG3159-PA 1692 Eaat2-RA 1..737 65..801 3685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:11:49
Subject Length Description Subject Range Query Range Score Percent Strand
Eaat2-RC 3398 CG3159-RC 797..1581 17..801 3925 100 Plus
Eaat2-RD 3169 CG3159-RD 597..1352 46..801 3780 100 Plus
Eaat2-RA 3057 CG3159-RA 485..1240 46..801 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 740356..740692 547..211 1685 100 Minus
2L 23513712 2L 739760..740017 801..544 1290 100 Minus
2L 23513712 2L 740799..740995 213..17 985 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:11:46 has no hits.

BO17223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:10 Download gff for BO17223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3159-PB 1..785 17..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:38 Download gff for BO17223.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 793..1581 14..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:16 Download gff for BO17223.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 793..1581 14..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:16 Download gff for BO17223.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 739760..740014 547..801 100 <- Minus
2L 740357..740690 213..546 100 <- Minus
2L 740800..740999 14..212 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:38 Download gff for BO17223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 739760..740014 547..801 100 <- Minus
arm_2L 740357..740690 213..546 100 <- Minus
arm_2L 740800..740999 14..212 99   Minus

BO17223.complete Sequence

1147 bp assembled on 2006-10-11

GenBank Submission: FJ634060

> BO17223.complete
GAAGTTATCAGTCGACATGGAAATGGAAAAGTCTGGCAAATTTTCAGATT
ACCTCTTCGCCAAAATGGGTCCCCCCACCTCAACTGAGCTGCCTCCGAAG
ACCACGGAATGCAGCGATGCCCCCGTGGAGTTGACCGGTTACCGCAGGTG
GCTCTCCGAGAATCTAATGCTCCTGGTCACCCTTTCCGGAGTTCTCCTTG
GTGTAATACTAGGACTCTCCTTACGGCCGCTTAATTTACATGGGGACTCC
ATCATGCTGATTTCCTATCCTGGCGAACTGTTTATGCGCGTACTCAAGCT
GATGATTTTGCCGCTAGTTATATCGAGCCTTATTGCCGGATCGGCCAGCC
TTAACGCCAAAATGAACGGCAAGATAGCGCTGCGCACGTTGGTTTACTTT
GCCAGCACTTCGTTCTTTAACGCTGCACTGGGAATCGCTCTCGTTCTGCT
CATCCATCCTGGAAATCCGGATCTGCACAATGCGGACGATCGATCTACAG
ATCGGCGGGCAGTTAACCTTCTAGATAGTCTTTTGGATTTGGGCAGGAAC
GTATTCCCGGACAACCTGTTTCAGGCCTCCATTCAGCAGGCGCACACCGT
CTACTTGCCCAAGCCGAGTATCCTGCACGTCTTCAACGAAACGATGAATG
ACACCTTGGCATCCGGATCGGAGGCCCAACGCTTGTCTGAAGACCTTACG
GAGGATGTGGTGCTGGTGAGGGACATCCAGTACCGCAGTGGAACCAACAC
CCTGGGCATCGTCTTCTTCTGCCTGGTGTTTGGTACTTTTTTGGGAACCA
TCGGCCAGAAGGGTCAGGTCGTGGTTGACTTCTTTGCCGCCATTTTTGAG
CGCCGCTGCCCTGCCCATTACATTCCGCTGCATGAACGAGAAACTCAAGG
TGGATCCGCGGATCACGCGATTTGTCCTTCCAATCGGATGCAACATCAAC
ATGGACGGAACGGCCCTATATATCGCAGTGGCATCGATATTCATTGCCCA
GATGAGCGGCATGGTTCTGGGATTTGGAGAGCTCCTTACGGTCCTTCTGA
CCTCCACGGCTGCCTCCATGAGCTCGGCCAGCGTTCCGAGTGCTGCCCTG
GTACTCCTTCTCGTGGTGCTGACCGCCATGCAAGCTTTCTAGACCAT

BO17223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Eaat2-RC 1740 CG3159-PC 1..834 17..850 4170 100 Plus
Eaat2-RD 1692 CG3159-PD 1..786 65..850 3930 100 Plus
Eaat2-RA 1692 CG3159-PA 1..786 65..850 3930 100 Plus
Eaat2-RC 1740 CG3159-PC 1101..1379 851..1129 1395 100 Plus
Eaat2-RD 1692 CG3159-PD 1053..1331 851..1129 1395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Eaat2-RC 3398 CG3159-RC 797..1630 17..850 4170 100 Plus
Eaat2-RD 3169 CG3159-RD 597..1401 46..850 4025 100 Plus
Eaat2-RA 3057 CG3159-RA 485..1289 46..850 4025 100 Plus
Eaat2-RC 3398 CG3159-RC 1897..2175 851..1129 1395 100 Plus
Eaat2-RD 3169 CG3159-RD 1668..1946 851..1129 1395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 740356..740692 547..211 1685 100 Minus
2L 23513712 2L 739711..740017 850..544 1535 100 Minus
2L 23513712 2L 738559..738839 1129..849 1405 100 Minus
2L 23513712 2L 740799..740995 213..17 985 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:09:52 has no hits.

BO17223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:51 Download gff for BO17223.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RB 1..1116 17..1132 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:10 Download gff for BO17223.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RB 780..1902 14..1135 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:19 Download gff for BO17223.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 797..1630 17..850 100 -- Plus
Eaat2-RC 1897..2175 851..1131 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:52 Download gff for BO17223.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RB 780..1902 14..1135 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:51 Download gff for BO17223.complete
Subject Subject Range Query Range Percent Splice Strand
Eaat2-RC 797..1630 17..850 100 -- Plus
Eaat2-RC 1897..2175 851..1131 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:51 Download gff for BO17223.complete
Subject Subject Range Query Range Percent Splice Strand
2L 740800..740995 17..212 100   Minus
2L 740357..740690 213..546 100 <- Minus
2L 738556..738837 851..1131 99 <- Minus
2L 739711..740014 547..850 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:19 Download gff for BO17223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 738556..738837 851..1131 99 <- Minus
arm_2L 739711..740014 547..850 100 <- Minus
arm_2L 740357..740690 213..546 100 <- Minus
arm_2L 740800..740995 17..212 100   Minus

BO17223.pep Sequence

Translation from 16 to 1147

> BO17223.pep
MEMEKSGKFSDYLFAKMGPPTSTELPPKTTECSDAPVELTGYRRWLSENL
MLLVTLSGVLLGVILGLSLRPLNLHGDSIMLISYPGELFMRVLKLMILPL
VISSLIAGSASLNAKMNGKIALRTLVYFASTSFFNAALGIALVLLIHPGN
PDLHNADDRSTDRRAVNLLDSLLDLGRNVFPDNLFQASIQQAHTVYLPKP
SILHVFNETMNDTLASGSEAQRLSEDLTEDVVLVRDIQYRSGTNTLGIVF
FCLVFGTFLGTIGQKGQVVVDFFAAIFERRCPAHYIPLHERETQGGSADH
AICPSNRMQHQHGRNGPIYRSGIDIHCPDERHGSGIWRAPYGPSDLHGCL
HELGQRSECCPGTPSRGADRHASFLDH

BO17223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
Eaat2-PC 579 CG3159-PC 1..278 1..278 1400 100 Plus
Eaat2-PD 563 CG3159-PD 1..262 17..278 1318 100 Plus
Eaat2-PA 563 CG3159-PA 1..262 17..278 1318 100 Plus
Eaat1-PD 479 CG3747-PD 11..229 42..278 301 31.7 Plus
Eaat1-PC 479 CG3747-PC 11..229 42..278 301 31.7 Plus