Clone Sequence Records
BO17223.3prime Sequence
797 bp (639 high quality bases) assembled on 2006-10-13
> BO17223.3prime
ATGGTCTAGAAAGCTTGCATGGCGGTCAGCACCACGAGAAGGAGTACCAG
GGCAGCACTCGGAACGCTGGCCGAGCTCATGGAGGCAGCCGTGGAGGTCA
GAAGGACCGTAAGGAGCTCTCCAAATCCCAGAACCATGCCGCTCATCTGG
GCAATGAATATCGATGCCACTGCGATATATAGGGCCGTTCCGTCCATGTT
GATGTTGCATCCGATTGGAAGGACAAATCGCGTGATCCGCGGATCCACCT
TGAGTTTCTCGTTCATGCAGCGGAATGTAATGGGCAGGGCAGCGGCGCTC
AAAAATGGCGGCAAAGAAGTCAACCACGACCTGACCCTTCTGGCCGATGG
TTCCCAAAAAAGTACCAAACACCAGGCAGAAGAAGACGATGCCCAGGGTG
TTGGTTCCACTGCGGTACTGGATGTCCCTCACCAGCACCACATCCTCCGT
AAGGTCTTCAGACAAGCGTTGGGCCTCCGATCCGGATGCCAAGGTGTCAT
TCATCGTTTCGTTGAAGACGTGCAGGATACTCGGCTTGGGCAAGTAGACG
GTGTGCGCCTGCTGAATGGAGGCCTGAAACAGGTTGTCCGGGAATACGTT
CCTGCCCAAATCCAAAAGACTATCTAGAAGGTTAACTGCCCGCCGATCTG
TAGATCGATCGTCCGCATTGTGCAGATCCGGATTTCCAGGATGGATGAGC
AGAACGAGAGCGATTCCCAGTGGAGCGTTAAAGAACGAAGTGCTTGGCAA
AAGTAAACCCACGTGCGCAGCGCTATCTTGCCGTTCATTTTGGCGGT
BO17223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3159-PB | 1116 | Eaat2-RB | 388..1113 | 744..19 | 3605 | 99.8 | Minus |
CG3159-PA | 1692 | Eaat2-RA | 340..786 | 744..298 | 2210 | 99.7 | Minus |
CG3159-PA | 1692 | Eaat2-RA | 1053..1331 | 297..19 | 1395 | 100 | Minus |
CG3159-PB | 1116 | Eaat2-RB | 339..384 | 795..750 | 205 | 97.8 | Minus |
CG3159-PA | 1692 | Eaat2-RA | 291..336 | 795..750 | 205 | 97.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:35:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaat2-RD | 3169 | CG3159-RD | 906..1401 | 795..298 | 2410 | 99.2 | Minus |
Eaat2-RC | 3398 | CG3159-RC | 1135..1630 | 795..298 | 2410 | 99.2 | Minus |
Eaat2-RA | 3057 | CG3159-RA | 794..1289 | 795..298 | 2410 | 99.2 | Minus |
Eaat2-RD | 3169 | CG3159-RD | 1668..1946 | 297..19 | 1395 | 100 | Minus |
Eaat2-RC | 3398 | CG3159-RC | 1897..2175 | 297..19 | 1395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 739711..740017 | 298..604 | 1535 | 100 | Plus |
2L | 23513712 | 2L | 738559..738839 | 19..299 | 1405 | 100 | Plus |
2L | 23513712 | 2L | 740356..740548 | 601..795 | 850 | 96.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:35:37 has no hits.
BO17223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:10 Download gff for
BO17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3159-PB | 337..1116 | 16..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:17 Download gff for
BO17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RA | 792..1289 | 298..797 | 99 | -- | Minus |
Eaat2-RA | 1556..1840 | 13..297 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:36 Download gff for
BO17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RA | 792..1289 | 298..797 | 99 | -- | Minus |
Eaat2-RA | 1556..1840 | 13..297 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:36 Download gff for
BO17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 738553..738837 | 13..297 | 98 | <- | Plus |
2L | 739711..740014 | 298..601 | 100 | <- | Plus |
2L | 740357..740549 | 602..797 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:17 Download gff for
BO17223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 738553..738837 | 13..297 | 98 | <- | Plus |
arm_2L | 739711..740014 | 298..601 | 100 | <- | Plus |
arm_2L | 740357..740549 | 602..797 | 97 | | Plus |
BO17223.5prime Sequence
801 bp (681 high quality bases) assembled on 2006-10-13
> BO17223.5prime
GAAGTTATCAGTCGACATGGAAATGGAAAAGTCTGGCAAATTTTCAGATT
ACCTCTTCGCCAAAATGGGTCCCCCCACCTCAACTGAGCTGCCTCCGAAG
ACCACGGAATGCAGCGATGCCCCCGTGGAGTTGACCGGTTACCGCAGGTG
GCTCTCCGAGAATCTAATGCTCCTGGTCACCCTTTCCGGAGTTCTCCTTG
GTGTAATACTAGGACTCTCCTTACGGCCGCTTAATTTACATGGGGACTCC
ATCATGCTGATTTCCTATCCTGGCGAACTGTTTATGCGCGTACTCAAGCT
GATGATTTTGCCGCTAGTTATATCGAGCCTTATTGCCGGATCGGCCAGCC
TTAACGCCAAAATGAACGGCAAGATAGCGCTGCGCACGTTGGTTTACTTT
GCCAGCACTTCGTTCTTTAACGCTGCACTGGGAATCGCTCTCGTTCTGCT
CATCCATCCTGGAAATCCGGATCTGCACAATGCGGACGATCGATCTACAG
ATCGGCGGGCAGTTAACCTTCTAGATAGTCTTTTGGATTTGGGCAGGAAC
GTATTCCCGGACAACCTGTTTCAGGCCTCCATTCAGCAGGCGCACACCGT
CTACTTGCCCAAGCCGAGTATCCTGCACGTCTTCAACGAAACGATGAATG
ACACCTTGGCATCCGGATCGGAGGCCCAACGCTTGTCTGAAGACCTTACG
GAGGATGTGGTGCTGGTGAGGGACATCCAGTACCGCAGTGGAACCAACAC
CCTGGGCATCGTCTTCTTCTGCCTGGTGTTTGGTACTTTTTTGGGAACCA
T
BO17223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3159-PB | 1116 | Eaat2-RB | 1..785 | 17..801 | 3925 | 100 | Plus |
CG3159-PA | 1692 | Eaat2-RA | 1..737 | 65..801 | 3685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:11:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaat2-RC | 3398 | CG3159-RC | 797..1581 | 17..801 | 3925 | 100 | Plus |
Eaat2-RD | 3169 | CG3159-RD | 597..1352 | 46..801 | 3780 | 100 | Plus |
Eaat2-RA | 3057 | CG3159-RA | 485..1240 | 46..801 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 740356..740692 | 547..211 | 1685 | 100 | Minus |
2L | 23513712 | 2L | 739760..740017 | 801..544 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 740799..740995 | 213..17 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:11:46 has no hits.
BO17223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:10 Download gff for
BO17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3159-PB | 1..785 | 17..801 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:38 Download gff for
BO17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RC | 793..1581 | 14..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:16 Download gff for
BO17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RC | 793..1581 | 14..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:16 Download gff for
BO17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 739760..740014 | 547..801 | 100 | <- | Minus |
2L | 740357..740690 | 213..546 | 100 | <- | Minus |
2L | 740800..740999 | 14..212 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:38 Download gff for
BO17223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 739760..740014 | 547..801 | 100 | <- | Minus |
arm_2L | 740357..740690 | 213..546 | 100 | <- | Minus |
arm_2L | 740800..740999 | 14..212 | 99 | | Minus |
BO17223.complete Sequence
1147 bp assembled on 2006-10-11
GenBank Submission: FJ634060
> BO17223.complete
GAAGTTATCAGTCGACATGGAAATGGAAAAGTCTGGCAAATTTTCAGATT
ACCTCTTCGCCAAAATGGGTCCCCCCACCTCAACTGAGCTGCCTCCGAAG
ACCACGGAATGCAGCGATGCCCCCGTGGAGTTGACCGGTTACCGCAGGTG
GCTCTCCGAGAATCTAATGCTCCTGGTCACCCTTTCCGGAGTTCTCCTTG
GTGTAATACTAGGACTCTCCTTACGGCCGCTTAATTTACATGGGGACTCC
ATCATGCTGATTTCCTATCCTGGCGAACTGTTTATGCGCGTACTCAAGCT
GATGATTTTGCCGCTAGTTATATCGAGCCTTATTGCCGGATCGGCCAGCC
TTAACGCCAAAATGAACGGCAAGATAGCGCTGCGCACGTTGGTTTACTTT
GCCAGCACTTCGTTCTTTAACGCTGCACTGGGAATCGCTCTCGTTCTGCT
CATCCATCCTGGAAATCCGGATCTGCACAATGCGGACGATCGATCTACAG
ATCGGCGGGCAGTTAACCTTCTAGATAGTCTTTTGGATTTGGGCAGGAAC
GTATTCCCGGACAACCTGTTTCAGGCCTCCATTCAGCAGGCGCACACCGT
CTACTTGCCCAAGCCGAGTATCCTGCACGTCTTCAACGAAACGATGAATG
ACACCTTGGCATCCGGATCGGAGGCCCAACGCTTGTCTGAAGACCTTACG
GAGGATGTGGTGCTGGTGAGGGACATCCAGTACCGCAGTGGAACCAACAC
CCTGGGCATCGTCTTCTTCTGCCTGGTGTTTGGTACTTTTTTGGGAACCA
TCGGCCAGAAGGGTCAGGTCGTGGTTGACTTCTTTGCCGCCATTTTTGAG
CGCCGCTGCCCTGCCCATTACATTCCGCTGCATGAACGAGAAACTCAAGG
TGGATCCGCGGATCACGCGATTTGTCCTTCCAATCGGATGCAACATCAAC
ATGGACGGAACGGCCCTATATATCGCAGTGGCATCGATATTCATTGCCCA
GATGAGCGGCATGGTTCTGGGATTTGGAGAGCTCCTTACGGTCCTTCTGA
CCTCCACGGCTGCCTCCATGAGCTCGGCCAGCGTTCCGAGTGCTGCCCTG
GTACTCCTTCTCGTGGTGCTGACCGCCATGCAAGCTTTCTAGACCAT
BO17223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaat2-RC | 1740 | CG3159-PC | 1..834 | 17..850 | 4170 | 100 | Plus |
Eaat2-RD | 1692 | CG3159-PD | 1..786 | 65..850 | 3930 | 100 | Plus |
Eaat2-RA | 1692 | CG3159-PA | 1..786 | 65..850 | 3930 | 100 | Plus |
Eaat2-RC | 1740 | CG3159-PC | 1101..1379 | 851..1129 | 1395 | 100 | Plus |
Eaat2-RD | 1692 | CG3159-PD | 1053..1331 | 851..1129 | 1395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaat2-RC | 3398 | CG3159-RC | 797..1630 | 17..850 | 4170 | 100 | Plus |
Eaat2-RD | 3169 | CG3159-RD | 597..1401 | 46..850 | 4025 | 100 | Plus |
Eaat2-RA | 3057 | CG3159-RA | 485..1289 | 46..850 | 4025 | 100 | Plus |
Eaat2-RC | 3398 | CG3159-RC | 1897..2175 | 851..1129 | 1395 | 100 | Plus |
Eaat2-RD | 3169 | CG3159-RD | 1668..1946 | 851..1129 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 740356..740692 | 547..211 | 1685 | 100 | Minus |
2L | 23513712 | 2L | 739711..740017 | 850..544 | 1535 | 100 | Minus |
2L | 23513712 | 2L | 738559..738839 | 1129..849 | 1405 | 100 | Minus |
2L | 23513712 | 2L | 740799..740995 | 213..17 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:09:52 has no hits.
BO17223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:51 Download gff for
BO17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RB | 1..1116 | 17..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:45:10 Download gff for
BO17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RB | 780..1902 | 14..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:19 Download gff for
BO17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RC | 797..1630 | 17..850 | 100 | -- | Plus |
Eaat2-RC | 1897..2175 | 851..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:52 Download gff for
BO17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RB | 780..1902 | 14..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:51 Download gff for
BO17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RC | 797..1630 | 17..850 | 100 | -- | Plus |
Eaat2-RC | 1897..2175 | 851..1131 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:51 Download gff for
BO17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 740800..740995 | 17..212 | 100 | | Minus |
2L | 740357..740690 | 213..546 | 100 | <- | Minus |
2L | 738556..738837 | 851..1131 | 99 | <- | Minus |
2L | 739711..740014 | 547..850 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:19 Download gff for
BO17223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 738556..738837 | 851..1131 | 99 | <- | Minus |
arm_2L | 739711..740014 | 547..850 | 100 | <- | Minus |
arm_2L | 740357..740690 | 213..546 | 100 | <- | Minus |
arm_2L | 740800..740995 | 17..212 | 100 | | Minus |
BO17223.pep Sequence
Translation from 16 to 1147
> BO17223.pep
MEMEKSGKFSDYLFAKMGPPTSTELPPKTTECSDAPVELTGYRRWLSENL
MLLVTLSGVLLGVILGLSLRPLNLHGDSIMLISYPGELFMRVLKLMILPL
VISSLIAGSASLNAKMNGKIALRTLVYFASTSFFNAALGIALVLLIHPGN
PDLHNADDRSTDRRAVNLLDSLLDLGRNVFPDNLFQASIQQAHTVYLPKP
SILHVFNETMNDTLASGSEAQRLSEDLTEDVVLVRDIQYRSGTNTLGIVF
FCLVFGTFLGTIGQKGQVVVDFFAAIFERRCPAHYIPLHERETQGGSADH
AICPSNRMQHQHGRNGPIYRSGIDIHCPDERHGSGIWRAPYGPSDLHGCL
HELGQRSECCPGTPSRGADRHASFLDH
BO17223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaat2-PC | 579 | CG3159-PC | 1..278 | 1..278 | 1400 | 100 | Plus |
Eaat2-PD | 563 | CG3159-PD | 1..262 | 17..278 | 1318 | 100 | Plus |
Eaat2-PA | 563 | CG3159-PA | 1..262 | 17..278 | 1318 | 100 | Plus |
Eaat1-PD | 479 | CG3747-PD | 11..229 | 42..278 | 301 | 31.7 | Plus |
Eaat1-PC | 479 | CG3747-PC | 11..229 | 42..278 | 301 | 31.7 | Plus |