Clone Sequence Records
BO17227.complete Sequence
1996 bp assembled on 2010-07-15
GenBank Submission: KX799300
> BO17227.complete
GAAGTTATCAGTCGACATGACTGTTTGGGGAATAGAAGCCATCACACTGA
ACGGATCGTCGGCAAGGGAAAGTTTGGAGCACCTTCCGGGAAACGGTGCA
ATTCGGGTGATACCAGAGGCGGGAGCCATGAACTCCGTGGAGCGCTACCG
TCAGGAGTGGCAGGTGCTGCTTGAAAACCTCGATGCGGACCCGGAAAGTC
TCCGGCAGTCGGCATTTGCCGGCGATCTCAAGATGTCCAAATTCCGCAGC
GTTCACTGGGCCCTCCTACTGCGCGTCCTGACGTCGGAGCACCGCAGTTG
GACTAGCCAGCGACTTCAGCAGCGAGTTAGGTACGACAAGTTCCGGGCAG
ACTACGTCCGCAATCCGCACCAACTGGCCGTGGACTGCAACGATGATCCG
CTGTCGCAGTCGACGCAAAGCGTGTGGAATCAGTACTTTAGCGACCAGGA
CCTATTCGCCGTCATCCGGCAGGATGTGGTGCGCACTTTCCCGGGTGTGG
ACTTCTTCCGTAAGCCATTGGTGCAGAATGCAATGGTCAACATACTGTTC
TACTACGCCAGGGAGCATCCGTATATGTGCTACCGGCAGGGCATGCACGA
GATCCTGGCTCCCATTATATTCGTTGTCTACAGCGATCACCAGTCCCTGC
TTCACTTCAGCGAACTGGCCAAAACGGATATTAATCCCACACTGCTGGAC
GTGCTGGATCCCGCCTATCTGGAAGCGGATACCTACTCTTTGTTCTCCCG
CCTCATGGCCTCCGTGGAGTCGTACTATCGCGTCTCGAATCTGGTCTCCA
CACCCGGTGGCCACATCGAACAGCGAGCCGAGAGCCCCGGGGACAATGAG
ACGTCGACCGAGGCGGAGGTTATCGGCCAGCTGAACTTCATACGGGACAA
AATACTCGCCAAGCAGGACCAGCACTTGCACCACTATCTCCAAAAGATGG
AAATCCCACTGCACATATTCGGCATTCGATGGCTAAGACTTCTCTTTGGA
CGGGAGTTTATGCTGCTGGACCTGTTGCTACTCTGGGATGCCATCTTCGC
AGATAGCGACCGCTTCGACCTGCCCAACTACATTCTAGTGGCAATGTTGG
TGCACATCCGTGATAAACTGCTTCTTAGTGACTACACCACATCGTTGACA
TATCTAATGCGCTACCCAAACAATGTTGATGTCCATCTGGTGCTGAGACA
TGCCCTATTCATGCTCAATCCCAAGCAGTTTGAGTATCCGCCAAACGCCT
TCACGTGTGTGTCCTTTGCCAACAGTTCCGCGGACAAGGATGTGCCCCCT
CCTGCGGGACAACGCCCGCGCACCAATTCAGAAAACTCTTCGATGGCCAC
TAGTGGTAGCCAGATCGATCGGCAGATCACCTTCATGCAGGAGCGCAATG
CGGCGGATTCTTCTGCTCTGGCCAAATTGCAAGATACCCATCGAGTTGCA
ATGGATGGATACTTGGAGAATAGTCCAGAGCTACTCCGATTGGAGCTGAA
GAATGCCCAAACTGTAATCAAGATAGCGCGAAGCAAGTTGCAGAGCTACC
TGAGCACTGTGCGCCATCATGTGGGAAAGCAGGCGAATGGTAGCGAAGAA
CTCGGTCGGACACTGGACGGGATTGAAGAGCTATGCAGCTTTCTGGACGT
TAAATTCATGTTCCCGCTGCACCAGCGATCGGCGCCCATCGACCAGGCTC
TGGAGGCCAACGAGCAGAAGCAGCTAAACACTGTCAGCAAACCGCCAAAG
CCAACGGCTTCCTCCACTCCCGCTAACGCACCGGCTGCTCTCTCTGCGAC
TGGTGGCTATCAGATGCCTGAGAACGCCTTTATGCACAGCTCGATGCGAC
GGCTCCTCGGGGAACTGCGTGAAATCGAGCTGTCCACGATAACGAGCGAT
GAGAAACCTGGAAACGCGGTGGTGCAAAACGGATTGCCAGCTGCGGAGCC
TCAGCAACGGCATCGAAACGAATCGAGTGCAAGCTTTCTAGACCAT
BO17227.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8449-RA | 1965 | CG8449-PA | 1..1962 | 17..1978 | 9810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8449-RA | 2318 | CG8449-RA | 171..2132 | 17..1978 | 9810 | 100 | Plus |
| Su(var)3-7-RA | 5051 | CG8599-RA | 4336..4842 | 1978..1472 | 2535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13271123..13271841 | 735..17 | 3595 | 100 | Minus |
| 3R | 32079331 | 3R | 13269323..13269829 | 1978..1472 | 2535 | 100 | Minus |
| 3R | 32079331 | 3R | 13270078..13270430 | 1471..1119 | 1765 | 100 | Minus |
| 3R | 32079331 | 3R | 13270767..13270911 | 975..831 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 13270492..13270634 | 1118..976 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 13270969..13271065 | 832..736 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:31:59 has no hits.
BO17227.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:21 Download gff for
BO17227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 186..2147 | 17..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:17 Download gff for
BO17227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 171..2132 | 17..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:04 Download gff for
BO17227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 171..2132 | 17..1980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:04 Download gff for
BO17227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13269320..13269829 | 1472..1980 | 99 | <- | Minus |
| 3R | 13270078..13270430 | 1119..1471 | 100 | <- | Minus |
| 3R | 13270492..13270634 | 976..1118 | 100 | <- | Minus |
| 3R | 13270767..13270909 | 833..975 | 100 | <- | Minus |
| 3R | 13270969..13271065 | 736..832 | 100 | <- | Minus |
| 3R | 13271123..13271841 | 17..735 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:17 Download gff for
BO17227.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9096489..9096631 | 833..975 | 100 | <- | Minus |
| arm_3R | 9096691..9096787 | 736..832 | 100 | <- | Minus |
| arm_3R | 9095042..9095551 | 1472..1980 | 99 | <- | Minus |
| arm_3R | 9095800..9096152 | 1119..1471 | 100 | <- | Minus |
| arm_3R | 9096214..9096356 | 976..1118 | 100 | <- | Minus |
| arm_3R | 9096845..9097563 | 17..735 | 100 | | Minus |
BO17227.3prime Sequence
852 bp (693 high quality bases) assembled on 2006-10-13
> BO17227.3prime
ATGGTCTAGAAAGCTTGCACTCGATTCGTTTCGATGCCGTTGCTGAGGCT
CCGCAGCTGGCAATCCGTTTTGCACCACCGCGTTTCCAGGTTTCTCATCG
CTCGTTATCGTGGACAGCTCGATTTCACGCAGTTCCCCGAGGAGCCGTCG
CATCGAGCTGTGCATAAAGGCGTTCTCAGGCATCTGATAGCCACCAGTCG
CAGAGAGAGCAGCCGGTGCGTTAGCGGGAGTGGAGGAAGCCGTTGGCTTT
GGCGGTTTGCTGACAGTGTTTAGCTGCTTCTGCTCGTTGGCCTCCAGAGC
CTGGTCGATGGGCGCCGATCGCTGGTGCAGCGGGAACATGAATTTAACGT
CCAGAAAGCTGCATAGCTCTTCAATCCCGTCCAGTGTCCGACCGAGTTCT
TCGCTACCATTCGCCTGCTTTCCCACATGATGGCGCACAGTGCTCAGGTA
GCTCTGCAACTTGCTTCGCGCTATCTTGATTACAGTTTGGGCATTCTTCA
GCTCCAATCGGAGTAGCTCTGGACTATTCTCCAAGTATCCATCCATTGCA
ACTCGATGGGTATCTTGCAATTTGGCCAGAGCAGAAGAATCCGCCGCATT
GCGCTCCTGCATGAAGGTGATCTGCCGATCGATCTGGCTACCACTAGTGG
CCATCGAAGAGTTTTCTGAATTGGTGCGCGGGCGTTGTCCCGCAGGAGGG
GGCACATCCTTGTCCGCGGAACTGTTGGCAAAGGACACACACGTGAAGGC
GTTTGGCGGATACTCAAACTGCTTGGGATTGAGCATGAATAGGGCATGTC
TCAGCACCAGATGGACATCAACATTGTTTGGGTAGCGCATTAGATATGTC
AA
BO17227.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8449-PA | 1965 | CG8449-RA | 1129..1962 | 852..19 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8449-RA | 2318 | CG8449-RA | 1299..2132 | 852..19 | 4170 | 100 | Minus |
| Su(var)3-7-RA | 5051 | CG8599-RA | 4336..4842 | 19..525 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13269323..13269829 | 19..525 | 2535 | 100 | Plus |
| 3R | 32079331 | 3R | 13270078..13270404 | 526..852 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:33:43 has no hits.
BO17227.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:12 Download gff for
BO17227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-PA | 1131..1965 | 16..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:01:08 Download gff for
BO17227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 1301..2132 | 19..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:54:27 Download gff for
BO17227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8449-RA | 1301..2132 | 19..850 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:54:27 Download gff for
BO17227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13269323..13269829 | 19..525 | 100 | <- | Plus |
| 3R | 13270078..13270402 | 526..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:01:08 Download gff for
BO17227.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9095045..9095551 | 19..525 | 100 | <- | Plus |
| arm_3R | 9095800..9096124 | 526..850 | 100 | | Plus |
BO17227.pep Sequence
Translation from 16 to 1996
> BO17227.pep
MTVWGIEAITLNGSSARESLEHLPGNGAIRVIPEAGAMNSVERYRQEWQV
LLENLDADPESLRQSAFAGDLKMSKFRSVHWALLLRVLTSEHRSWTSQRL
QQRVRYDKFRADYVRNPHQLAVDCNDDPLSQSTQSVWNQYFSDQDLFAVI
RQDVVRTFPGVDFFRKPLVQNAMVNILFYYAREHPYMCYRQGMHEILAPI
IFVVYSDHQSLLHFSELAKTDINPTLLDVLDPAYLEADTYSLFSRLMASV
ESYYRVSNLVSTPGGHIEQRAESPGDNETSTEAEVIGQLNFIRDKILAKQ
DQHLHHYLQKMEIPLHIFGIRWLRLLFGREFMLLDLLLLWDAIFADSDRF
DLPNYILVAMLVHIRDKLLLSDYTTSLTYLMRYPNNVDVHLVLRHALFML
NPKQFEYPPNAFTCVSFANSSADKDVPPPAGQRPRTNSENSSMATSGSQI
DRQITFMQERNAADSSALAKLQDTHRVAMDGYLENSPELLRLELKNAQTV
IKIARSKLQSYLSTVRHHVGKQANGSEELGRTLDGIEELCSFLDVKFMFP
LHQRSAPIDQALEANEQKQLNTVSKPPKPTASSTPANAPAALSATGGYQM
PENAFMHSSMRRLLGELREIELSTITSDEKPGNAVVQNGLPAAEPQQRHR
NESSASFLDH
BO17227.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8449-PA | 654 | CG8449-PA | 1..654 | 1..654 | 3380 | 100 | Plus |
| GAPsec-PA | 403 | CG5978-PA | 23..399 | 58..396 | 283 | 25.3 | Plus |
| CG5745-PA | 546 | CG5745-PA | 194..509 | 17..382 | 243 | 24.3 | Plus |
