Clone Sequence Records
BO17229.5prime Sequence
660 bp (659 high quality bases) assembled on 2006-10-13
> BO17229.5prime
GAAGTTATCAGTCGACATGAAACTGTTACTAAAAGTTCACTCGGAACGCA
CGGCGCGCAGAAGACGTACACCCGAACCCAGTTTAGCCCACTCCCGGGAT
TCATCAAGAATCAACAGCAACAATGCCAATGGTAATGGCAACGCCAATCG
AAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACCATCCTGC
TGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGTGCTCTAC
GTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAGCCATCTA
TTTTGGCAACAACTACGACCACCAAACGTTTCCGAATCTAGGAAACGGCC
ATCTCGTCGTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATGGT
CTGACCATTCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCACAT
TGGAGTGCAGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAAGA
TGCGCACCATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATATC
CAATCCAATTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGCGG
CTGGGACTGGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTTTA
TGGGCGACTA
BO17229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32042-PF | 900 | PGRP-LA-RF | 1..644 | 17..660 | 3220 | 100 | Plus |
CG32042-PE | 1107 | PGRP-LA-RE | 299..851 | 108..660 | 2765 | 100 | Plus |
CG32042-PD | 520 | PGRP-LA-RD | 299..520 | 108..329 | 1110 | 100 | Plus |
CG32042-PC | 417 | PGRP-LA-RC | 1..161 | 500..660 | 805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RF | 1606 | CG32042-RF | 239..883 | 16..660 | 3225 | 100 | Plus |
PGRP-LA-RC | 1593 | CG32042-RC | 238..870 | 16..660 | 3035 | 98.1 | Plus |
PGRP-LA-RG | 945 | CG32042-RG | 68..622 | 106..660 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9336986..9337223 | 330..567 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 9336712..9336933 | 108..329 | 1110 | 100 | Plus |
3L | 28110227 | 3L | 9337454..9337548 | 566..660 | 475 | 100 | Plus |
3L | 28110227 | 3L | 9336292..9336384 | 16..108 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:57:41 has no hits.
BO17229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:13 Download gff for
BO17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32042-PF | 1..643 | 17..659 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:12:29 Download gff for
BO17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 234..882 | 10..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:42 Download gff for
BO17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 234..882 | 10..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:42 Download gff for
BO17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9336287..9336383 | 10..107 | 97 | -> | Plus |
3L | 9336712..9336933 | 108..329 | 100 | -> | Plus |
3L | 9336986..9337221 | 330..565 | 100 | -> | Plus |
3L | 9337454..9337547 | 566..659 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:12:29 Download gff for
BO17229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9329387..9329483 | 10..107 | 97 | -> | Plus |
arm_3L | 9329812..9330033 | 108..329 | 100 | -> | Plus |
arm_3L | 9330086..9330321 | 330..565 | 100 | -> | Plus |
arm_3L | 9330554..9330647 | 566..659 | 100 | | Plus |
BO17229.complete Sequence
931 bp assembled on 2008-11-10
GenBank Submission: KX794444
> BO17229.complete
GAAGTTATCAGTCGACATGAAACTGTTACTAAAAGTTCACTCGGAACGCA
CGGCGCGCAGAAGACGTACACCCGAACCCAGTTTAGCCCACTCCCGGGAT
TCATCAAGAATCAACAGCAACAATGCCAATGGTAATGGCAACGCCAATCG
AAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACCATCCTGC
TGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGTGCTCTAC
GTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAGCCATCTA
TTTTGGCAACAACTACGACCACCAAACGTTTCCGAATCTAGGAAACGGCC
ATCTCGTCGTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATGGT
CTGACCATTCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCACAT
TGGAGTGCAGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAAGA
TGCGCACCATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATATC
CAATCCAATTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGCGG
CTGGGACTGGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTTTA
TGGGCGACTATGGCCGGTTTAAGCCCGGTCCCAAACAGCTGGAAGGTGTC
CAATTTCTGCTGGCCCATGCAGTGGCCAATCGAAATATTGATGTGGACTA
CAAACTAGTGGCGCAAAATCAGACTAAGGTGACCAGAAGCCCGGGTGCAT
ATGTGTATCAAGAAATCCGGAACTGGCCGCATTTCTACGGCTGCGGAATG
GACGAAGCACCGGCCTGCGGCATCGAATTGGGCATGAAAACGGAATCGTG
GGACGCCAAGCAAGCAAGCTTTCTAGACCAT
BO17229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RF | 900 | CG32042-PF | 1..897 | 17..913 | 4485 | 100 | Plus |
PGRP-LA-RE | 1107 | CG32042-PE | 299..1104 | 108..913 | 4030 | 100 | Plus |
PGRP-LA-RG | 417 | CG32042-PG | 1..414 | 500..913 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-RF | 1606 | CG32042-RF | 239..1136 | 16..913 | 4490 | 100 | Plus |
PGRP-LA-RC | 1593 | CG32042-RC | 238..1123 | 16..913 | 4275 | 98.7 | Plus |
PGRP-LA-RG | 945 | CG32042-RG | 68..875 | 106..913 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9336986..9337223 | 330..567 | 1190 | 100 | Plus |
3L | 28110227 | 3L | 9336712..9336933 | 108..329 | 1110 | 100 | Plus |
3L | 28110227 | 3L | 9337454..9337660 | 566..772 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 9337723..9337866 | 770..913 | 720 | 100 | Plus |
3L | 28110227 | 3L | 9336292..9336384 | 16..108 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:06:25 has no hits.
BO17229.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:17 Download gff for
BO17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 234..1141 | 10..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:19:15 Download gff for
BO17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 240..1136 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:23 Download gff for
BO17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 240..1136 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:55 Download gff for
BO17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LA-RF | 240..1136 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:55 Download gff for
BO17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9336712..9336933 | 108..329 | 100 | -> | Plus |
3L | 9336986..9337221 | 330..565 | 100 | -> | Plus |
3L | 9337454..9337660 | 566..772 | 100 | -> | Plus |
3L | 9336293..9336383 | 17..107 | 100 | -> | Plus |
3L | 9337726..9337866 | 773..915 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:19:15 Download gff for
BO17229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9329393..9329483 | 17..107 | 100 | -> | Plus |
arm_3L | 9329812..9330033 | 108..329 | 100 | -> | Plus |
arm_3L | 9330086..9330321 | 330..565 | 100 | -> | Plus |
arm_3L | 9330554..9330760 | 566..772 | 100 | -> | Plus |
arm_3L | 9330826..9330966 | 773..915 | 98 | | Plus |
BO17229.pep Sequence
Translation from 16 to 931
> BO17229.pep
MKLLLKVHSERTARRRRTPEPSLAHSRDSSRINSNNANGNGNANRSRDKS
PSRRVTRNTILLITLILLVLATGLIVLYVELNRPKPELPSNKAIYFGNNY
DHQTFPNLGNGHLVVDREQWGASKNSHGLTIPLKRPIPYVLITHIGVQSL
PCDNIYKCSIKMRTIQDSAIAEKGLPDIQSNFYVSEEGNIYVGRGWDWAN
TYANQTLAITFMGDYGRFKPGPKQLEGVQFLLAHAVANRNIDVDYKLVAQ
NQTKVTRSPGAYVYQEIRNWPHFYGCGMDEAPACGIELGMKTESWDAKQA
SFLDH
BO17229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LA-PF | 299 | CG32042-PF | 1..299 | 1..299 | 1588 | 100 | Plus |
PGRP-LA-PE | 368 | CG32042-PE | 92..368 | 24..299 | 1435 | 97.5 | Plus |
PGRP-LA-PG | 138 | CG32042-PG | 1..138 | 162..299 | 749 | 100 | Plus |
PGRP-LA-PC | 138 | CG32042-PC | 1..138 | 162..299 | 749 | 100 | Plus |
PGRP-LA-PD | 173 | CG32042-PD | 92..173 | 24..104 | 373 | 91.5 | Plus |