Clone BO17229 Report

Search the DGRC for BO17229

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LA-RF
Protein status:BO17229.pep: Imported from assembly
Sequenced Size:931

Clone Sequence Records

BO17229.5prime Sequence

660 bp (659 high quality bases) assembled on 2006-10-13

> BO17229.5prime
GAAGTTATCAGTCGACATGAAACTGTTACTAAAAGTTCACTCGGAACGCA
CGGCGCGCAGAAGACGTACACCCGAACCCAGTTTAGCCCACTCCCGGGAT
TCATCAAGAATCAACAGCAACAATGCCAATGGTAATGGCAACGCCAATCG
AAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACCATCCTGC
TGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGTGCTCTAC
GTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAGCCATCTA
TTTTGGCAACAACTACGACCACCAAACGTTTCCGAATCTAGGAAACGGCC
ATCTCGTCGTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATGGT
CTGACCATTCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCACAT
TGGAGTGCAGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAAGA
TGCGCACCATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATATC
CAATCCAATTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGCGG
CTGGGACTGGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTTTA
TGGGCGACTA

BO17229.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32042-PF 900 PGRP-LA-RF 1..644 17..660 3220 100 Plus
CG32042-PE 1107 PGRP-LA-RE 299..851 108..660 2765 100 Plus
CG32042-PD 520 PGRP-LA-RD 299..520 108..329 1110 100 Plus
CG32042-PC 417 PGRP-LA-RC 1..161 500..660 805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RF 1606 CG32042-RF 239..883 16..660 3225 100 Plus
PGRP-LA-RC 1593 CG32042-RC 238..870 16..660 3035 98.1 Plus
PGRP-LA-RG 945 CG32042-RG 68..622 106..660 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9336986..9337223 330..567 1190 100 Plus
3L 28110227 3L 9336712..9336933 108..329 1110 100 Plus
3L 28110227 3L 9337454..9337548 566..660 475 100 Plus
3L 28110227 3L 9336292..9336384 16..108 465 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:57:41 has no hits.

BO17229.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:13 Download gff for BO17229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32042-PF 1..643 17..659 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:12:29 Download gff for BO17229.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 234..882 10..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:42 Download gff for BO17229.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 234..882 10..659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:42 Download gff for BO17229.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9336287..9336383 10..107 97 -> Plus
3L 9336712..9336933 108..329 100 -> Plus
3L 9336986..9337221 330..565 100 -> Plus
3L 9337454..9337547 566..659 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:12:29 Download gff for BO17229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9329387..9329483 10..107 97 -> Plus
arm_3L 9329812..9330033 108..329 100 -> Plus
arm_3L 9330086..9330321 330..565 100 -> Plus
arm_3L 9330554..9330647 566..659 100   Plus

BO17229.complete Sequence

931 bp assembled on 2008-11-10

GenBank Submission: KX794444

> BO17229.complete
GAAGTTATCAGTCGACATGAAACTGTTACTAAAAGTTCACTCGGAACGCA
CGGCGCGCAGAAGACGTACACCCGAACCCAGTTTAGCCCACTCCCGGGAT
TCATCAAGAATCAACAGCAACAATGCCAATGGTAATGGCAACGCCAATCG
AAGTCGTGATAAGTCGCCATCTAGGCGGGTCACTCGGAACACCATCCTGC
TGATCACGCTGATCCTGTTGGTCCTGGCCACCGGATTGATTGTGCTCTAC
GTGGAACTCAATCGACCCAAGCCCGAGTTGCCCAGTAATAAAGCCATCTA
TTTTGGCAACAACTACGACCACCAAACGTTTCCGAATCTAGGAAACGGCC
ATCTCGTCGTCGACAGAGAGCAGTGGGGAGCGTCGAAGAACTCTCATGGT
CTGACCATTCCCCTGAAGCGACCCATTCCCTACGTCCTAATCACCCACAT
TGGAGTGCAGTCTCTGCCCTGCGATAACATCTACAAGTGCTCCATCAAGA
TGCGCACCATTCAGGATTCAGCCATTGCTGAGAAGGGTCTGCCGGATATC
CAATCCAATTTTTATGTTTCGGAGGAGGGTAACATCTACGTTGGCCGCGG
CTGGGACTGGGCCAACACGTATGCGAACCAGACATTGGCCATTACCTTTA
TGGGCGACTATGGCCGGTTTAAGCCCGGTCCCAAACAGCTGGAAGGTGTC
CAATTTCTGCTGGCCCATGCAGTGGCCAATCGAAATATTGATGTGGACTA
CAAACTAGTGGCGCAAAATCAGACTAAGGTGACCAGAAGCCCGGGTGCAT
ATGTGTATCAAGAAATCCGGAACTGGCCGCATTTCTACGGCTGCGGAATG
GACGAAGCACCGGCCTGCGGCATCGAATTGGGCATGAAAACGGAATCGTG
GGACGCCAAGCAAGCAAGCTTTCTAGACCAT

BO17229.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RF 900 CG32042-PF 1..897 17..913 4485 100 Plus
PGRP-LA-RE 1107 CG32042-PE 299..1104 108..913 4030 100 Plus
PGRP-LA-RG 417 CG32042-PG 1..414 500..913 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-RF 1606 CG32042-RF 239..1136 16..913 4490 100 Plus
PGRP-LA-RC 1593 CG32042-RC 238..1123 16..913 4275 98.7 Plus
PGRP-LA-RG 945 CG32042-RG 68..875 106..913 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9336986..9337223 330..567 1190 100 Plus
3L 28110227 3L 9336712..9336933 108..329 1110 100 Plus
3L 28110227 3L 9337454..9337660 566..772 1035 100 Plus
3L 28110227 3L 9337723..9337866 770..913 720 100 Plus
3L 28110227 3L 9336292..9336384 16..108 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:06:25 has no hits.

BO17229.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:17 Download gff for BO17229.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 234..1141 10..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:19:15 Download gff for BO17229.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 240..1136 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:23 Download gff for BO17229.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 240..1136 17..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:55 Download gff for BO17229.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LA-RF 240..1136 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:55 Download gff for BO17229.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9336712..9336933 108..329 100 -> Plus
3L 9336986..9337221 330..565 100 -> Plus
3L 9337454..9337660 566..772 100 -> Plus
3L 9336293..9336383 17..107 100 -> Plus
3L 9337726..9337866 773..915 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:19:15 Download gff for BO17229.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9329393..9329483 17..107 100 -> Plus
arm_3L 9329812..9330033 108..329 100 -> Plus
arm_3L 9330086..9330321 330..565 100 -> Plus
arm_3L 9330554..9330760 566..772 100 -> Plus
arm_3L 9330826..9330966 773..915 98   Plus

BO17229.pep Sequence

Translation from 16 to 931

> BO17229.pep
MKLLLKVHSERTARRRRTPEPSLAHSRDSSRINSNNANGNGNANRSRDKS
PSRRVTRNTILLITLILLVLATGLIVLYVELNRPKPELPSNKAIYFGNNY
DHQTFPNLGNGHLVVDREQWGASKNSHGLTIPLKRPIPYVLITHIGVQSL
PCDNIYKCSIKMRTIQDSAIAEKGLPDIQSNFYVSEEGNIYVGRGWDWAN
TYANQTLAITFMGDYGRFKPGPKQLEGVQFLLAHAVANRNIDVDYKLVAQ
NQTKVTRSPGAYVYQEIRNWPHFYGCGMDEAPACGIELGMKTESWDAKQA
SFLDH

BO17229.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LA-PF 299 CG32042-PF 1..299 1..299 1588 100 Plus
PGRP-LA-PE 368 CG32042-PE 92..368 24..299 1435 97.5 Plus
PGRP-LA-PG 138 CG32042-PG 1..138 162..299 749 100 Plus
PGRP-LA-PC 138 CG32042-PC 1..138 162..299 749 100 Plus
PGRP-LA-PD 173 CG32042-PD 92..173 24..104 373 91.5 Plus