Clone BO17232 Report

Search the DGRC for BO17232

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG11961-RB
Protein status:BO17232.pep: validated full length
Sequenced Size:2635

Clone Sequence Records

BO17232.3prime Sequence

903 bp (826 high quality bases) assembled on 2006-10-13

> BO17232.3prime
ATGGTCTAGAAAGCTTGCGAAGATCCGGCTCTCGAATGAAGCTGGCCAGG
GTGTGGCATCCACATAATGGGGGAAACTGTCGAGGAACTTCTTAAAGTCA
GGCGTTATTAGTTCCTTGTGATGGTTCCAATGGCCTCCGAGCCCAAGTTC
CAGAGTAGAAGAGTTCCAATTTCCGTTGGGTTTCTCTAGTTCTAGCCAGA
ATTTAAGTGGATCTCCATTGACACCCCACGAGAAGTAGATGAAGTAAGGT
GGCTCAAAGCTCAGACGTAAGGGTGCCTGATGGAAGGACCAGTCCATCAT
CTTTGCTCCGTTCAAGGGCTGTATAAAGAGGGCCATGTGATTGGGTCCAC
TTAGCTGCATTTCATAGCGAATTTTGGTGGGCGACACTGTATTCTTGGAG
AGCAATAAAACGGTTGGCACATTCTCGCCAAGAACAGGTTCCGATGCGGG
TATCCATAAACTGTTCTTTCTGGTCTTGTGCCAACGCTGATTATATAGGG
GCAATCCGCAATTAATTTCCTTATCGCAATCGGATCCAATTCTTTGGGCC
AGTGTCATGTTGATAACAGCATTTTTCACGGTGTAAGTGCGTCTGTCCTG
GGGCATAATGAAGTAACCAGATTCCTGACGGCGCACTTTGTTTTGAGCGT
CGTGGAAGGTACGCTTGGTGTGCAGGACAGCGAAACGCTGGACATTCGTT
TCTGGGCGATAGGGGAATCCAATTGGTGTCATTGCAATAATGAAGCACAA
TAACGTGATGCCCATCAGGCCGCAGATGATGGTCTTCGATTTGTTGAAAC
ACTGCAGAACAGGGATAATGAAACCGCAGCAGAGGAACCCACAGCGACAC
TGAAAACAGCCACCGCCAAATCCGGATTAAAGTTCTCTCCAAAACGACAA
AAA

BO17232.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-PB 2604 CG11961-RB 1721..2601 898..19 4290 99.5 Minus
CG11961-PA 2676 CG11961-RA 1793..2673 898..19 4290 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-RC 3589 CG11961-RC 1869..2753 902..19 4340 99.4 Minus
CG11961-RA 2838 CG11961-RA 1869..2753 902..19 4340 99.4 Minus
CG11961-RB 2960 CG11961-RB 1991..2875 902..19 4340 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19361109..19361339 902..673 1045 97.8 Minus
2R 25286936 2R 19361719..19361914 471..276 980 100 Minus
2R 25286936 2R 19362122..19362288 185..19 835 100 Minus
2R 25286936 2R 19361556..19361658 572..470 515 100 Minus
2R 25286936 2R 19361396..19361496 673..573 505 100 Minus
2R 25286936 2R 19361967..19362062 279..184 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:17:40 has no hits.

BO17232.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:17 Download gff for BO17232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-PA 1793..2676 18..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:21:32 Download gff for BO17232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 1995..2875 19..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:10 Download gff for BO17232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 1995..2875 19..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:10 Download gff for BO17232.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19361113..19361339 673..898 98 -> Minus
2R 19361397..19361496 573..672 100 -> Minus
2R 19361556..19361658 470..572 100 -> Minus
2R 19361721..19361913 277..469 100 -> Minus
2R 19361970..19362062 184..276 100 -> Minus
2R 19362124..19362288 19..183 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:21:32 Download gff for BO17232.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15248618..15248844 673..898 98 -> Minus
arm_2R 15249629..15249793 19..183 100   Minus
arm_2R 15248902..15249001 573..672 100 -> Minus
arm_2R 15249061..15249163 470..572 100 -> Minus
arm_2R 15249226..15249418 277..469 100 -> Minus
arm_2R 15249475..15249567 184..276 100 -> Minus

BO17232.5prime Sequence

791 bp (715 high quality bases) assembled on 2006-10-13

> BO17232.5prime
GAAGTTATCAGTCGACATGAGCAGCGAAACGGAGGAGAAAAGATCGAAGG
CTCAGCCCAATGGCTGTGAGCGAGCATTCGTCCAGGGAAACAAGATTAAG
TGGTTCTGGGCACCCGCCTTCTTTGGATTCTGGCTGCTGCTCTATGTGAC
CATCTCGATACCCGCCTGCCACCGCCTTCCCCGCCCACTGACCATTCAGG
ATGAGGAAACGCATCCCGACCAGTTCATCGCCGAGCGCGCAGAGAAAAAT
CTACGGGAGCTAGTGAGCCTGGGACCCCGAGTGGTGGGCAGTCGACAGAA
TGAGATGGCCGCTTTGAAGATGCTCTCCCAGAAGATGCAAAAAATTCGAT
CCGGCACTGCCAACGATATTGAAGTGGATGTTCAGGTGGCATCCGGTAGC
TATGTTCACTGGTCCATGGTCAATATGTACCAGAGCATTCAGAATATTGT
CGTTAAGATCAGTCCCAAGAACACGAACAGCACTACTTATCTTCTGGTAA
ACAGTCACTATGATTCCGTGCCGGCGGGACCTGGTGCTGGTGATGATGGT
TCCATGGTGGCCACTATGATGGAGGTACTCCGTGTGCTGGCCAAGTCCGA
TAAGCCACTAAAGAACCCTGTGGTATTCCTGTTCAATGGTGCCGAGGAAA
ATCCCCTTCAGGCCTCGCATGCCTTCATCACCCAGCACAAGTGGGCCAAA
TATTGCAAAGCCCTTATCATTCTCGATTCCTGCGGGAATGGCGGTCGAGA
GATCCTCTTCCAATCGGGACCCCATCATCCCTGGCTAATGA

BO17232.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-PB 2604 CG11961-RB 1..775 17..791 3800 99.6 Plus
CG11961-PA 2676 CG11961-RA 104..847 48..791 3645 99.5 Plus
CG30049-PA 2289 CG30049-RA 446..512 630..696 160 89.5 Plus
CG9416-PA 2586 CG9416-RA 339..408 376..445 150 88.5 Plus
CG10073-PA 2622 CG10073-RA 422..458 414..450 135 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-RB 2960 CG11961-RB 275..1049 17..791 3830 99.6 Plus
CG11961-RC 3589 CG11961-RC 184..927 48..791 3675 99.6 Plus
CG11961-RA 2838 CG11961-RA 184..927 48..791 3675 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19359184..19359844 48..708 3305 100 Plus
2R 25286936 2R 19359909..19359991 709..791 370 96.4 Plus
2R 25286936 2R 19382142..19382450 400..708 255 72.2 Plus
2R 25286936 2R 19370207..19370289 445..363 235 85.5 Minus
2R 25286936 2R 12356466..12356532 630..696 230 89.6 Plus
Blast to na_te.dros performed on 2015-02-10 17:51:58 has no hits.

BO17232.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:17 Download gff for BO17232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-PB 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:45:46 Download gff for BO17232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 270..1048 8..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:06:13 Download gff for BO17232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 270..1048 8..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:06:13 Download gff for BO17232.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19359186..19359844 50..708 100 -> Plus
2R 19359909..19359990 709..790 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:45:46 Download gff for BO17232.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15246691..15247349 50..708 100 -> Plus
arm_2R 15247414..15247495 709..790 96   Plus

BO17232.complete Sequence

2635 bp assembled on 2006-12-18

GenBank Submission: FJ634061

> BO17232.complete
GAAGTTATCAGTCGACATGAGCAGCGAAACGGAGGAGAAAAGATCGAAGG
CTCAGCCCAATGGCTGTGAGCGAGCATTCGTCCAGGGAAACAAGATTAAG
TGGTTCTGGGCACCCGCCTTCTTTGGATTCTGGCTGCTGCTCTATGTGAC
CATCTCGATACCCGCCTGCCACCGCCTTCCCCGCCCACTGACCATTCAGG
ATGAGGAAACGCATCCCGACCAGTTCATCGCCGAGCGCGCAGAGAAAAAT
CTACGGGAGCTAGTGAGCCTGGGACCCCGAGTGGTGGGCAGTCGACAGAA
TGAGATGGCCGCTTTGAAGATGCTCTCCCAGAAGATGCAAAAAATTCGAT
CCGGCACTGCCAACGATATTGAAGTGGATGTTCAGGTGGCATCCGGTAGC
TATGTTCACTGGTCCATGGTCAATATGTACCAGAGCATTCAGAATATTGT
CGTTAAGATCAGTCCCAAGAACACGAACAGCACTACTTATCTTCTGGTAA
ACAGTCACTATGATTCCGTGCCGGCGGGACCTGGTGCTGGTGATGATGGT
TCCATGGTGGCCACTATGATGGAGGTACTCCGTGTGCTGGCCAAGTCCGA
TAAGCCACTAAAGAACCCTGTGGTATTCCTGTTCAATGGTGCCGAGGAAA
ATCCCCTTCAGGCCTCGCATGCCTTCATCACCCAGCACAAGTGGGCCAAA
TATTGCAAAGCCCTTATCAATCTCGATTCCTGCGGAAATGGCGGTCGAGA
GATCCTCTTCCAATCGGGACCCAATCATCCCTGGCTAATGAAGAACTACC
GACGTGCCATCAAGCACCCGTATGCTTCTACAATGGGCGAGGAGCTGTTC
CAGCACAATTTCATTCCCTCTGACACGGACTTCCGCATTTTCCGTGACCA
TGGATCGGTTCCCGGCTTGGATATGGCCTACACCTACAACGGATTTGTCT
ACCACACGCGACACGACAAGGCAGAGATCTTTCCCAGGGGTAGTTTCCAG
CATACTGGCGATAATCTGCTTGCTTTGGTCCGACAGATTGCAAACTCTCC
GGAGATTGAGAATTCAGCGAAATACGCCAAAGGTCACACCATCTATTTCG
ATGTTATGGGTTGGTTTCTGGTTTTCTACACCGAAACCGAAGGCGTTATC
TTGAACGTCATCGTCTCCTTGGTATCCATCGGGATTTGTGGCTACGCTTT
TAAGCTGATGTCGGTCAACTCGGGCATAAAGCTCGAAAAGATCCTCAAGA
AGGTGGGGCACACACTCCTCGTACAGATTCTATCTGTTGTTGTGGGAGCC
ATCCTGCCAGTTTTGCTCGGTCTGTTCATGGATGCGGTGCATTTGCCTCT
GTCGTGGTTCTCGAACTCCTGGCTCATCCTGGGTCTCTACTTCACCACTT
TCTTCTTCGGTTTGGCCATAGTGCCTGCCTTGTACTTCCACTGGACCAAG
CGTGATAAGCTTCCCATTGGTCAGCGGGTTCAGCTTTTGCTGCACTGCCA
CTGCCTACTTTTATCTGTTCTCACCCTGATCTTCACCATCTGTGGAATTC
GCTCTGTTTTTGTTTTGATGCTCAGTTGCTTGTTCTATACAGTGGGCTTG
ATCATTAATATTGCCACCAAACTGCACACCAAAGATGTCGCATGGGTCAT
TCCGCACATTGTTTGCACTGTGCCACCATTTGTATTCTTTGCATATTTCT
CGCACGGATTCTTCACCACGTTCATTCCAATGTTTGGTCGTTTTGGAGAG
AACCTTAATCCGGATTTGGCGGTGGCTGTTTTCAGTGTCGCTGTGGGCTT
CCTCTGCTGCGGTTTCATTATCCCTGTTCTGCAGTTGTTCAACAAATCGA
AGACCATCATCTGCGGCCTGATGGGCATCACGTTATTGTGCTTCATTATT
GCAATGACACCAATTGGATTCCCCTATCGCCCAGAAACGAATGTCCAGCG
TTTCGCTGTCCTGCACACCAAGCGTACCTTCCACGACGCTCAAAACAAAG
TGCGCCGTCAGGAATCTGGTTACTTCATTATGCCCCAGGACAGACGCACT
TACACCGTGAAAAATGCTGTTATCAACATGACACTGGCCCAAAGAATTGG
ATCCGATTGCGATAAGGAAATTAATTGCGGATTGCCCCTATATAATCAGC
GTTGGCACAAGACCAGAAAGAACAGTTTATGGATACCCGCATCGGAACCT
GTTCTTGGCGAGAATGTGCCAACCGTTTTATTGCTCTCCAAGAATACAGT
GTCGCCCACCAAAATTCGCTATGAAATGCAGCTAAGTGGACCCAATCACA
TGGCCCTCTTTATACAGCCCTTGAACGGAGCAAAGATGATGGACTGGTCC
TTCCATCAGGCACCCTTACGTCTGAGCTTTGAGCCACCTTACTTCATCTA
CTTCTCGTGGGGTGTCAATGGAGATCCACTTAAATTCTGGCTAGAACTAG
AGAAACCCAACGGAAATTGGAACTCTTCTACTCTGGAACTTGGGCTCGGA
GGCCATTGGAACCATCACAAGGAACTAATAACGCCTGACTTTAAGAAGTT
CCTCGACAGTTTCCCCCATTATGTGGATGCCACACCCTGGCCAGCTTCAT
TCGAGAGCCGGATCTTCGCAAGCTTTCTAGACCAT

BO17232.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-RB 2604 CG11961-PB 1..2601 17..2617 13005 100 Plus
CG11961-RC 2676 CG11961-PC 104..2673 48..2617 12850 100 Plus
CG11961-RA 2676 CG11961-PA 104..2673 48..2617 12850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-RB 2960 CG11961-RB 275..2875 17..2617 13005 100 Plus
CG11961-RC 3589 CG11961-RC 184..2753 48..2617 12850 100 Plus
CG11961-RA 2838 CG11961-RA 184..2753 48..2617 12850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19359184..19359844 48..708 3305 100 Plus
2R 25286936 2R 19360328..19360713 1069..1454 1930 100 Plus
2R 25286936 2R 19359909..19360269 709..1069 1805 100 Plus
2R 25286936 2R 19361009..19361339 1633..1963 1655 100 Plus
2R 25286936 2R 19361719..19361914 2165..2360 980 100 Plus
2R 25286936 2R 19360767..19360947 1454..1634 905 100 Plus
2R 25286936 2R 19362122..19362288 2451..2617 835 100 Plus
2R 25286936 2R 19361556..19361658 2064..2166 515 100 Plus
2R 25286936 2R 19361396..19361496 1963..2063 505 100 Plus
2R 25286936 2R 19361967..19362062 2357..2452 480 100 Plus
2R 25286936 2R 19382142..19382450 400..708 255 72.2 Plus
2R 25286936 2R 19370207..19370289 445..363 235 85.5 Minus
2R 25286936 2R 12356466..12356532 630..696 230 89.6 Plus
2R 25286936 2R 19365185..19365275 838..928 215 82.4 Plus
Blast to na_te.dros performed on 2014-11-27 13:19:38 has no hits.

BO17232.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:20 Download gff for BO17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 1..2604 17..2618 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:59 Download gff for BO17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 71..2676 8..2617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:54 Download gff for BO17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 275..2875 17..2619 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:20 Download gff for BO17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 71..2676 8..2617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:52 Download gff for BO17232.complete
Subject Subject Range Query Range Percent Splice Strand
CG11961-RB 275..2875 17..2619 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:52 Download gff for BO17232.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19362124..19362288 2453..2619 98   Plus
2R 19357806..19357838 17..49 100 -> Plus
2R 19359186..19359844 50..708 100 -> Plus
2R 19359909..19360269 709..1069 100 -> Plus
2R 19360329..19360712 1070..1453 100 -> Plus
2R 19360767..19360947 1454..1634 100 -> Plus
2R 19361011..19361339 1635..1963 100 -> Plus
2R 19361397..19361496 1964..2063 100 -> Plus
2R 19361556..19361658 2064..2166 100 -> Plus
2R 19361721..19361913 2167..2359 100 -> Plus
2R 19361970..19362062 2360..2452 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:54 Download gff for BO17232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15245311..15245343 17..49 100 -> Plus
arm_2R 15246691..15247349 50..708 100 -> Plus
arm_2R 15247414..15247774 709..1069 100 -> Plus
arm_2R 15247834..15248217 1070..1453 100 -> Plus
arm_2R 15248272..15248452 1454..1634 100 -> Plus
arm_2R 15248516..15248844 1635..1963 100 -> Plus
arm_2R 15248902..15249001 1964..2063 100 -> Plus
arm_2R 15249061..15249163 2064..2166 100 -> Plus
arm_2R 15249226..15249418 2167..2359 100 -> Plus
arm_2R 15249475..15249567 2360..2452 100 -> Plus
arm_2R 15249629..15249793 2453..2619 98   Plus

BO17232.pep Sequence

Translation from 16 to 2635

> BO17232.pep
MSSETEEKRSKAQPNGCERAFVQGNKIKWFWAPAFFGFWLLLYVTISIPA
CHRLPRPLTIQDEETHPDQFIAERAEKNLRELVSLGPRVVGSRQNEMAAL
KMLSQKMQKIRSGTANDIEVDVQVASGSYVHWSMVNMYQSIQNIVVKISP
KNTNSTTYLLVNSHYDSVPAGPGAGDDGSMVATMMEVLRVLAKSDKPLKN
PVVFLFNGAEENPLQASHAFITQHKWAKYCKALINLDSCGNGGREILFQS
GPNHPWLMKNYRRAIKHPYASTMGEELFQHNFIPSDTDFRIFRDHGSVPG
LDMAYTYNGFVYHTRHDKAEIFPRGSFQHTGDNLLALVRQIANSPEIENS
AKYAKGHTIYFDVMGWFLVFYTETEGVILNVIVSLVSIGICGYAFKLMSV
NSGIKLEKILKKVGHTLLVQILSVVVGAILPVLLGLFMDAVHLPLSWFSN
SWLILGLYFTTFFFGLAIVPALYFHWTKRDKLPIGQRVQLLLHCHCLLLS
VLTLIFTICGIRSVFVLMLSCLFYTVGLIINIATKLHTKDVAWVIPHIVC
TVPPFVFFAYFSHGFFTTFIPMFGRFGENLNPDLAVAVFSVAVGFLCCGF
IIPVLQLFNKSKTIICGLMGITLLCFIIAMTPIGFPYRPETNVQRFAVLH
TKRTFHDAQNKVRRQESGYFIMPQDRRTYTVKNAVINMTLAQRIGSDCDK
EINCGLPLYNQRWHKTRKNSLWIPASEPVLGENVPTVLLLSKNTVSPTKI
RYEMQLSGPNHMALFIQPLNGAKMMDWSFHQAPLRLSFEPPYFIYFSWGV
NGDPLKFWLELEKPNGNWNSSTLELGLGGHWNHHKELITPDFKKFLDSFP
HYVDATPWPASFESRIFASFLDH

BO17232.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11961-PB 867 CG11961-PB 1..867 1..867 4633 100 Plus
CG11961-PC 891 CG11961-PC 35..891 11..867 4582 99.9 Plus
CG11961-PA 891 CG11961-PA 35..891 11..867 4582 99.9 Plus
CG10062-PA 862 CG10062-PA 18..862 26..867 2266 49.1 Plus
CG10062-PC 868 CG10062-PC 18..868 26..867 2249 48.7 Plus