Clone BO17233 Report

Search the DGRC for BO17233

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptBace-RA
Protein status:BO17233.pep: validated full length
Sequenced Size:1150

Clone Sequence Records

BO17233.3prime Sequence

757 bp (729 high quality bases) assembled on 2006-10-13

> BO17233.3prime
ATGGTCTAGAAAGCTTGCGGCGACTGGGGCGAAGCCAATGCGGTTGTTGC
CCAAATCGAACTCGGTGTAGTACTGGCCAATGAAGACATCGCCCAGAATC
CAGAAGTCGGTGCCCATGTACTCGAAGGCGGACATACAGTTGCCGTCCGA
CTGGATGATGTAGGCCGAGGGCTTCAGGACGAAGTTGGTGCCACCGATGT
TGAAGGTGACATCGGGCAGGGAGCTGACGCTTGAGCAGTCCAGATAGCCA
TCCTCACCCACGTTCAGGATCTCGGAGAGGGTAATGTAAGCATTGTAGGG
AGCCACGATCAGGGAGGTGCCGGTATCGGCAATAGCCTGGCAATCATCAC
ACAGCGAGTAACCGTCAATGGAGGATCCAGCCATGGTGAACTGCCAGTAG
CCCTGCTCCGAGATGGGAACGTAGGTCAGAGCGCCAGAGTACAGAGAGGC
ATCGGAGCCACCGAAGATGAGTTCACCACCCATAGTGGAGGTGCCATCGC
GGGCCAGATAGAACGAGAAGACGGAGTTGTCGACCAGACCCTGGGACACC
ATGTTGTAGAACGGAGGAGCCACACCATCCACGGCCAGGGACTCATAGGC
CATACCGAGAATGCCATCGAAGTTGGCATCGTTGAAGTTGGTGCCCGGCT
CGTTGGTGGATTCAGCAAAGGTCTGGCTCTGGATGCTCAGGCCATTGACG
TCGACGGTATCGGTGGACAGGTAGCCAGTTAGGCTGCCAGTGCCATACTG
GATGGAG

BO17233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13095-PA 1119 CG13095-RA 378..1116 757..19 3695 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-RB 1415 CG13095-RB 417..1155 757..19 3695 100 Minus
Bace-RA 1200 CG13095-RA 417..1155 757..19 3695 100 Minus
CG17134-RA 1263 CG17134-RA 1071..1186 140..28 185 78.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8495153..8495891 19..757 3695 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:19:45 has no hits.

BO17233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:18 Download gff for BO17233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13095-PA 378..1119 15..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:52 Download gff for BO17233.3prime
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 417..1160 11..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:45:55 Download gff for BO17233.3prime
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 417..1160 11..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:45:55 Download gff for BO17233.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8495148..8495891 11..757 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:52 Download gff for BO17233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8495148..8495891 11..757 99   Plus

BO17233.5prime Sequence

743 bp (644 high quality bases) assembled on 2006-10-13

> BO17233.5prime
GAAGTTATCAGTCGACATGTTCAAGACCATCGCTGTAGTAGTGCTCCTGG
CAGCCCTGGCCAGTGCCGAGCTCCATCGCGTGCCGATCCTCAAGGAGCAG
AACTTTGTGAAGACGCGTCAGAATGTTTTGGCCGAGAAATCCTATCTGCG
CACCAAGTACCAGCTGCCCTCGCTTCGCAGCGTGGATGAGGAACAGCTGT
CCAACTCGATGAATATGGCTTACTACGGAGCCATCTCCATCGGAACTCCC
GCTCAGAGCTTCAAGGTTCTGTTCGACTCAGGCTCCTCGAACCTGTGGGT
GCCATCGAACACCTGCAAGAGCGATGCCTGCCTGACCCACAACCAGTACG
ACTCCAGCGCCAGCTCCACCTACGTGGCCAACGGCGAATCCTTCTCCATC
CAGTATGGCACTGGCAGCCTAACTGGCTACCTGTCCACCGATACCGTCGA
CGTCAATGGCCTGAGCATCCAGAGCCAGACCTTTGCTGAATCCACCAACG
AGCCGGGCACCAACTTCAACGATGCCAACTTCGATGGCATTCTCGGTATG
GCCTATGAGTCCCTGGCCGTGGATGGTGTGGCTCCTCCGTTCTACAACAT
GGTGTCCCAGGGTCTGGTCGACAACTCCGTCTTCTCGTTCTATCTGGGCC
GCGATGGCACCTCCACTATGGGTGGTGAACTCATCTTCGGTGGCTCCGAT
GCCTCTCTGTACTCTGGCGCTCTGACCTACCTTCCCATCTCGG

BO17233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13095-PA 1119 CG13095-RA 1..727 17..743 3585 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-RB 1415 CG13095-RB 40..766 17..743 3605 99.7 Plus
Bace-RA 1200 CG13095-RA 40..766 17..743 3605 99.7 Plus
CG33128-RA 1387 CG33128-RA 476..621 338..483 205 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8495542..8496268 743..17 3605 99.7 Minus
2L 23513712 2L 1494545..1494690 338..483 205 76 Plus
Blast to na_te.dros performed on 2015-02-10 17:16:12 has no hits.

BO17233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:19 Download gff for BO17233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13095-PA 1..727 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:22 Download gff for BO17233.5prime
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 35..766 10..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:20 Download gff for BO17233.5prime
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 35..766 10..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:20 Download gff for BO17233.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8495542..8496273 10..743 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:22 Download gff for BO17233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8495542..8496273 10..743 99   Minus

BO17233.complete Sequence

1150 bp assembled on 2006-10-11

GenBank Submission: FJ634062

> BO17233.complete
GAAGTTATCAGTCGACATGTTCAAGACCATCGCTGTAGTAGTGCTCCTGG
CAGCCCTGGCCAGTGCCGAGCTCCATCGCGTGCCGATCCTCAAGGAGCAG
AACTTTGTGAAGACGCGTCAGAATGTTTTGGCCGAGAAATCCTATCTGCG
CACCAAGTACCAGCTGCCCTCGCTTCGCAGCGTGGATGAGGAACAGCTGT
CCAACTCGATGAATATGGCTTACTACGGAGCCATCTCCATCGGAACTCCC
GCTCAGAGCTTCAAGGTTCTGTTCGACTCAGGCTCCTCGAACCTGTGGGT
GCCATCGAACACCTGCAAGAGCGATGCCTGCCTGACCCACAACCAGTACG
ACTCCAGCGCCAGCTCCACCTACGTGGCCAACGGCGAATCCTTCTCCATC
CAGTATGGCACTGGCAGCCTAACTGGCTACCTGTCCACCGATACCGTCGA
CGTCAATGGCCTGAGCATCCAGAGCCAGACCTTTGCTGAATCCACCAACG
AGCCGGGCACCAACTTCAACGATGCCAACTTCGATGGCATTCTCGGTATG
GCCTATGAGTCCCTGGCCGTGGATGGTGTGGCTCCTCCGTTCTACAACAT
GGTGTCCCAGGGTCTGGTCGACAACTCCGTCTTCTCGTTCTATCTGGCCC
GCGATGGCACCTCCACTATGGGTGGTGAACTCATCTTCGGTGGCTCCGAT
GCCTCTCTGTACTCTGGCGCTCTGACCTACGTTCCCATCTCGGAGCAGGG
CTACTGGCAGTTCACCATGGCTGGATCCTCCATTGACGGTTACTCGCTGT
GTGATGATTGCCAGGCTATTGCCGATACCGGCACCTCCCTGATCGTGGCT
CCCTACAATGCTTACATTACCCTCTCCGAGATCCTGAACGTGGGTGAGGA
TGGCTATCTGGACTGCTCAAGCGTCAGCTCCCTGCCCGATGTCACCTTCA
ACATCGGTGGCACCAACTTCGTCCTGAAGCCCTCGGCCTACATCATCCAG
TCGGACGGCAACTGTATGTCCGCCTTCGAGTACATGGGCACCGACTTCTG
GATTCTGGGCGATGTCTTCATTGGCCAGTACTACACCGAGTTCGATTTGG
GCAACAACCGCATTGGCTTCGCCCCAGTCGCCGCAAGCTTTCTAGACCAT

BO17233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-RB 1119 CG13095-PB 1..1116 17..1132 5580 100 Plus
Bace-RA 1119 CG13095-PA 1..1116 17..1132 5580 100 Plus
CG33128-RA 1218 CG33128-PA 400..545 338..483 205 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-RB 1415 CG13095-RB 40..1155 17..1132 5580 100 Plus
Bace-RA 1200 CG13095-RA 40..1155 17..1132 5580 100 Plus
CG33128-RA 1387 CG33128-RA 476..621 338..483 205 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8495153..8496268 1132..17 5580 100 Minus
2L 23513712 2L 1494545..1494690 338..483 205 76 Plus
Blast to na_te.dros performed on 2014-11-27 19:56:24 has no hits.

BO17233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:38 Download gff for BO17233.complete
Subject Subject Range Query Range Percent Splice Strand
CG13095-RA 1..1119 17..1136 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:49 Download gff for BO17233.complete
Subject Subject Range Query Range Percent Splice Strand
CG13095-RA 32..1157 10..1140 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:12 Download gff for BO17233.complete
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 45..1155 22..1134 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:38 Download gff for BO17233.complete
Subject Subject Range Query Range Percent Splice Strand
CG13095-RA 32..1157 10..1140 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:15 Download gff for BO17233.complete
Subject Subject Range Query Range Percent Splice Strand
Bace-RA 45..1155 22..1134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:15 Download gff for BO17233.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8495151..8496263 22..1134 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:12 Download gff for BO17233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8495151..8496263 22..1134 99   Minus

BO17233.pep Sequence

Translation from 16 to 1150

> BO17233.pep
MFKTIAVVVLLAALASAELHRVPILKEQNFVKTRQNVLAEKSYLRTKYQL
PSLRSVDEEQLSNSMNMAYYGAISIGTPAQSFKVLFDSGSSNLWVPSNTC
KSDACLTHNQYDSSASSTYVANGESFSIQYGTGSLTGYLSTDTVDVNGLS
IQSQTFAESTNEPGTNFNDANFDGILGMAYESLAVDGVAPPFYNMVSQGL
VDNSVFSFYLARDGTSTMGGELIFGGSDASLYSGALTYVPISEQGYWQFT
MAGSSIDGYSLCDDCQAIADTGTSLIVAPYNAYITLSEILNVGEDGYLDC
SSVSSLPDVTFNIGGTNFVLKPSAYIIQSDGNCMSAFEYMGTDFWILGDV
FIGQYYTEFDLGNNRIGFAPVAASFLDH

BO17233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Bace-PB 372 CG13095-PB 1..372 1..372 1923 100 Plus
Bace-PA 372 CG13095-PA 1..372 1..372 1923 100 Plus
CG33128-PA 405 CG33128-PA 6..405 7..372 1034 52 Plus
CG17134-PA 391 CG17134-PA 2..389 3..372 1023 54.4 Plus
pcl-PA 407 CG13374-PA 12..379 5..371 959 51.8 Plus