Clone Sequence Records
BO17235.3prime Sequence
726 bp (656 high quality bases) assembled on 2006-10-13
> BO17235.3prime
ATGGTCTAGAAAGCTTGCGTAATCCGCCTTGGCCGTCCAGGTGGCCTTGT
TTCCCAGGACGCCCTTGTCGCAGTTCTCACGCAGAAATCTAAGACCCGCT
TCGATGGAGCGCTCCAGGTCATCCTGAGACTTGGGCTTTTTCGCTGGTGG
AGCTCTGTCATCCAATCCAGCAGGCGGAGGAATAGCGGCACCCATGCCAC
GACTGGATGTGCTCGGTTGTTCATCAGCTTCGTCTTCGTTATTCGCACTG
TAGCTCCGTCGTTGGAACTTCTTTTCCTCCTTTGTGCTGTGAAAATTGTG
GAACTGCGGCTCTTGGGCACGGTTCCACACCATAGGCGGTGGCATGCTGC
TGAAGTTACTGCGCTTAAGGGGGACAGGCTCTGGCATGGGCGCAAATTCT
GCATGCCGCTGGGCACGCTGCTTCTCATTCCACTCCTCCTGGGACATTGG
CAGGCGTTCGGCCTTGTACTTCCACTCCTCCTCAGGTGGTTCTGCGCTCT
CCGAGTCTGCTAGCTTGCGCACACCAGGTTTGTTCTTGTCCCAATCGCGT
ACGTGCTCCTTGCGCAATTCTTCCAGTTCAGCCTCCTCCTTTTCTTTTTT
ACGCTCGATGGCTGCCCTCCTCTCTTGTTCCGCCCGATTTAGCTCTGCTT
CTTCTTTCGCCAATTCGTCCTTCTTTTGCTGTTCCTCCCGCAGGTAGTCT
TCCTCGCTGATGGGTGGGCAGCCGTT
BO17235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-PA | 1707 | CG7183-RA | 1006..1704 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-RB | 2121 | CG7183-RB | 1041..1748 | 726..19 | 3510 | 99.7 | Minus |
| CG7183-RA | 2367 | CG7183-RA | 1287..1994 | 726..19 | 3510 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18218520..18219227 | 19..726 | 3510 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:39:41 has no hits.
BO17235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:20 Download gff for
BO17235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-PA | 997..1707 | 16..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:48:30 Download gff for
BO17235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 1287..2000 | 11..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:15 Download gff for
BO17235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 1287..2000 | 11..726 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:15 Download gff for
BO17235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18218514..18219227 | 11..726 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:48:30 Download gff for
BO17235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14044236..14044949 | 11..726 | 99 | | Plus |
BO17235.5prime Sequence
725 bp (673 high quality bases) assembled on 2006-10-13
> BO17235.5prime
GAAGTTATCAGTCGACATGAACGATCCAAACAAGGCTATTAGTGTGAATC
TTTCCTCGCTGCTCAGCCTGAAGGCGGAATTGCTGCGGAAACAGCATGAG
GTGAGGGTGGCCAAGGCCACAAAGGCATCCGCCGCCGACTTTCGCCCCAC
CAAGAGCGCCGGCAACAAGGAAAAGTCCAGTGATCAGGGCTACAAAAAGG
TCGCAAGCAGCGACGATGGTGCCAAAGTGTACGAGGCCGAGGACCATGCT
CAGTTGGAGAAGTCACGGCGCATCCTGGAGGCCAAGAGTAAGTTCTACGA
CCGGATGAGCCGCAATGGAGGCAGCCTCAACTCCGATGACAATTGCCTGG
TGATGTTCAACCGCAAAAAACAGGAGGCAGATCGGGAGCCGGAGCAGTGC
ACGCAGAGACGTGAGTCCCGCCAGCGACTGAGTAGCAGCAGCAGTTCCAG
CCAAGATGAAGAAGGCCACGACGATTTAGAGGTGGAGTACGTTGACTGCC
TGGGACGCACCAGAAAGTGTTTGCGGAAGGACTTGAAGGAGGCCAAGAGA
CGCGACAAGCAACTTGCCGAGAGCATGCCGGAGCGCCTAGATCAGACCAA
GGCCAACTGGATGATAAATACCAAAGGAAGCCGCGAGCTGAATAGTAACC
ACAACAGCGATGATGAGTCCTTCATTGGGCCGCGTCCAACGGAGAGCGTC
TTCAGCGAAGCCCTGTCCACGATGA
BO17235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-PA | 1707 | CG7183-RA | 1..709 | 17..725 | 3545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-RB | 2121 | CG7183-RB | 45..753 | 17..725 | 3545 | 100 | Plus |
| CG7183-RA | 2367 | CG7183-RA | 291..999 | 17..725 | 3545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18219515..18220223 | 725..17 | 3545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:49:22 has no hits.
BO17235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:20 Download gff for
BO17235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-PA | 1..708 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:32:50 Download gff for
BO17235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..998 | 17..724 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:03 Download gff for
BO17235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..998 | 17..724 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:03 Download gff for
BO17235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18219516..18220223 | 17..724 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:32:50 Download gff for
BO17235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14045238..14045945 | 17..724 | 100 | | Minus |
BO17235.complete Sequence
1738 bp assembled on 2007-03-23
GenBank Submission: FJ634063
> BO17235.complete
GAAGTTATCAGTCGACATGAACGATCCAAACAAGGCTATTAGTGTGAATC
TTTCCTCGCTGCTCAGCCTGAAGGCGGAATTGCTGCGGAAACAGCATGAG
GTGAGGGTGGCCAAGGCCACAAAGGCATCCGCCGCCGACTTTCGCCCCAC
CAAGAGCGCCGGCAACAAGGAAAAGTCCAGTGATCAGGGCTACAAAAAGG
TCGCAAGCAGCGACGATGGTGCCAAAGTGTACGAGGCCGAGGACCATGCT
CAGTTGGAGAAGTCACGGCGCATCCTGGAGGCCAAGAGTAAGTTCTACGA
CCGGATGAGCCGCAATGGAGGCAGCCTCAACTCCGATGACAATTGCCTGG
TGATGTTCAACCGCAAAAAACAGGAGGCAGATCGGGAGCCGGAGCAGTGC
ACGCAGAGACGTGAGTCCCGCCAGCGACTGAGTAGCAGCAGCAGTTCCAG
CCAAGATGAAGAAGGCCACGACGATTTAGAGGTGGAGTACGTTGACTGCC
TGGGACGCACCAGAAAGTGTTTGCGGAAGGACTTGAAGGAGGCCAAGAGA
CGCGACAAGCAACTTGCCGAGAGCATGCCGGAGCGCCTAGATCAGACCAA
GGCCAACTGGATGATAAATACCAAAGGAAGCCGCGAGCTGAATAGTAACC
ACAACAGCGATGATGAGTCCTTCATTGGGCCGCGTCCAACGGAGAGCGTC
TTCAGCGAAGCCCTGTCCACGATGACGAAGCACGACGAACAGCGCATGAA
CTGGGAGCGCAAGGAGCAGGAGAATTTTGAAAAGCCTGATGTCCACTACC
AGGATGTCTTCTTTGACGAAGCGCGCACCCACGGTGTTGGCTACTATGCC
TTCTCCACGGACGAAGACGAGCGCCGACAGCAGCAGTTGGATCTGGAAAA
GGCACGCCAAGCAACGAAGGCTAAGCAGATGCGACGAGATGAATTGCGCG
CCCAACGAGACCGTCTCGTGGCGGATCGCGTGCTGGCCGCCAAAAACAGG
ATTCGAGAACGCAACGGCTTGCCACCCATCAGCGAGGAAGACTACCTGCG
GGAGGAACAGCAAAAGAAGGACGAATTGGCGAAAGAAGAAGCAGAGCTAA
ATCGGGCGGAACAAGAGAGGAGGGCAGCCATCGAGCGTAAAAAAGAAAAG
GAGGAGGCTGAACTGGAAGAATTGCGCAAGGAGCACGTACGCGATTGGGA
CAAGAACAAACCTGGTGTGCGCAAGCTAGCAGACTCGGAGAGCGCAGAAC
CACCTGAGGAGGAGTGGAAGTACAAGGCCGAACGCCTGCCAATGTCCCAG
GAGGAGTGGAATGAGAAGCAGCGTGCCCAGCGGCATGCAGAATTTGCGCC
CATGCCAGAGCCTGTCCCCCTTAAGCGCAGTAACTTCAGCAGCATGCCAC
CGCCTATGGTGTGGAACCGTGCCCAAGAGCCGCAGTTCCACAATTTTCAC
AGCACAAAGGAGGAAAAGAAGTTCCAACGACGGAGCTACAGTGCGAATAA
CGAAGACGAAGCTGATGAACAACCGAGCACATCCAGTCGTGGCATGGGTG
CCGCTATTCCTCCGCCTGCTGGATTGGATGACAGAGCTCCACCAGCGAAA
AAGCCCAAGTCTCAGGATGACCTGGAGCGCTCCATCGAAGCGGGTCTTAG
ATTTCTGCGTGAGAACTGCGACAAGGGCGTCCTGGGAAACAAGGCCACCT
GGACGGCCAAGGCGGATTACGCAAGCTTTCTAGACCAT
BO17235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-RB | 1707 | CG7183-PB | 1..1704 | 17..1720 | 8520 | 100 | Plus |
| CG7183-RA | 1707 | CG7183-PA | 1..1704 | 17..1720 | 8520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-RB | 2121 | CG7183-RB | 45..1748 | 17..1720 | 8520 | 100 | Plus |
| CG7183-RA | 2367 | CG7183-RA | 291..1994 | 17..1720 | 8520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18218520..18220223 | 1720..17 | 8520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:30:51 has no hits.
BO17235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:40 Download gff for
BO17235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 1..1707 | 17..1723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:28 Download gff for
BO17235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..2000 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:35 Download gff for
BO17235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..1994 | 17..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:40 Download gff for
BO17235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..2000 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:48 Download gff for
BO17235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7183-RA | 291..1994 | 17..1722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:48 Download gff for
BO17235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18218517..18220223 | 17..1722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:35 Download gff for
BO17235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14044239..14045945 | 17..1722 | 99 | | Minus |
BO17235.pep Sequence
Translation from 16 to 1738
> BO17235.pep
MNDPNKAISVNLSSLLSLKAELLRKQHEVRVAKATKASAADFRPTKSAGN
KEKSSDQGYKKVASSDDGAKVYEAEDHAQLEKSRRILEAKSKFYDRMSRN
GGSLNSDDNCLVMFNRKKQEADREPEQCTQRRESRQRLSSSSSSSQDEEG
HDDLEVEYVDCLGRTRKCLRKDLKEAKRRDKQLAESMPERLDQTKANWMI
NTKGSRELNSNHNSDDESFIGPRPTESVFSEALSTMTKHDEQRMNWERKE
QENFEKPDVHYQDVFFDEARTHGVGYYAFSTDEDERRQQQLDLEKARQAT
KAKQMRRDELRAQRDRLVADRVLAAKNRIRERNGLPPISEEDYLREEQQK
KDELAKEEAELNRAEQERRAAIERKKEKEEAELEELRKEHVRDWDKNKPG
VRKLADSESAEPPEEEWKYKAERLPMSQEEWNEKQRAQRHAEFAPMPEPV
PLKRSNFSSMPPPMVWNRAQEPQFHNFHSTKEEKKFQRRSYSANNEDEAD
EQPSTSSRGMGAAIPPPAGLDDRAPPAKKPKSQDDLERSIEAGLRFLREN
CDKGVLGNKATWTAKADYASFLDH
BO17235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7183-PB | 568 | CG7183-PB | 1..568 | 1..568 | 2952 | 100 | Plus |
| CG7183-PA | 568 | CG7183-PA | 1..568 | 1..568 | 2952 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 273..747 | 21..502 | 208 | 21 | Plus |
| CG2839-PA | 826 | CG2839-PA | 313..721 | 19..438 | 201 | 20.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 355..738 | 19..422 | 182 | 21.5 | Plus |
| rgn-PD | 800 | CG6014-PD | 432..796 | 46..452 | 162 | 23 | Plus |
| rgn-PA | 800 | CG6014-PA | 432..796 | 46..452 | 162 | 23 | Plus |
