Clone Sequence Records
BO17240.3prime Sequence
554 bp (526 high quality bases) assembled on 2006-10-13
> BO17240.3prime
ATGGTCTAGAAAGCTTGCCTCGATCCGTATGACCCCGGCTCCGACACCAC
CACTGTGTGCGCACATGGGCGGCATAAAGGTCCATTTGTCGGTCTCCGGA
TCGTACACCTCGACTGTAGACAAATTTGACTCGCCATCATAGCCGCCGAT
GGCCCACAGTTTGCCCATGTTGGCGGCCAGAGCCACCCGCGAGCGTTTGC
AATTCATTGGTGTCACCAGCTTCCAGGTGTCCGTCTGAGGGTCGTAGCAC
TCTACGGATCGAAGGAATGAGTTGCCGCAGTAGCCGCCGCACACGTATAT
CTTTCCGTTCAGCGTGGCCACGCCCAGTCTACAGCGACGATTCAGCATGG
GCGACATCTTAACCCAGACATCTTCGGCCTGGTCGTACCGCTCCACCGAA
TCGAATATGGACAACCCATCATGACCGCCAAGGGCGTAGACGTAGCCGTT
CAATTGGGTAACTCCACCAGCCGAACGATATTTCATCATTTGAGCAACAG
TCTTCCAAGTGTTAGACTTTGGATAGTAAACTTCAACGGTGTTGAGCGAC
GTGA
BO17240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3571-PA | 1728 | CG3571-RA | 1190..1725 | 554..19 | 2680 | 100 | Minus |
| CG3571-PB | 1617 | CG3571-RB | 1079..1614 | 554..19 | 2680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KLHL18-RC | 2292 | CG3571-RC | 1251..1786 | 554..19 | 2680 | 100 | Minus |
| KLHL18-RB | 2199 | CG3571-RB | 1349..1884 | 554..19 | 2680 | 100 | Minus |
| KLHL18-RA | 2101 | CG3571-RA | 1251..1786 | 554..19 | 2680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12008416..12008895 | 19..498 | 2400 | 100 | Plus |
| 3R | 32079331 | 3R | 12008967..12009024 | 497..554 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:54:36 has no hits.
BO17240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:24 Download gff for
BO17240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3571-PB | 1080..1617 | 15..553 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:05:14 Download gff for
BO17240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KLHL18-RA | 1252..1789 | 15..553 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:15:12 Download gff for
BO17240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KLHL18-RA | 1252..1789 | 15..553 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:15:12 Download gff for
BO17240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12008413..12008895 | 15..498 | 99 | <- | Plus |
| 3R | 12008969..12009023 | 499..553 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:05:14 Download gff for
BO17240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7834135..7834617 | 15..498 | 99 | <- | Plus |
| arm_3R | 7834691..7834745 | 499..553 | 100 | | Plus |
BO17240.5prime Sequence
507 bp (415 high quality bases) assembled on 2006-10-13
> BO17240.5prime
GAAGTTATCAGTCGACATGCCATCCCAATTATTGCAGGTTGAAGATCAGA
CCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCCCGTATTTCTAT
GCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAGGAGATCACCAT
GAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCTGATCAACTATG
TTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGCAGAACCTGATG
GTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGATGCCTGTGCCAG
TTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGGAATCCGCACCT
TCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTGCCGACAAGTAT
ATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAGTTTCTCGCCCT
GGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGAACTCAACGTAC
GCACCGA
BO17240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:18:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3571-PB | 1617 | CG3571-RB | 1..491 | 17..507 | 2455 | 100 | Plus |
| CG3571-PA | 1728 | CG3571-RA | 131..602 | 36..507 | 2360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KLHL18-RB | 2199 | CG3571-RB | 271..761 | 17..507 | 2455 | 100 | Plus |
| KLHL18-RC | 2292 | CG3571-RC | 192..663 | 36..507 | 2360 | 100 | Plus |
| KLHL18-RA | 2101 | CG3571-RA | 192..663 | 36..507 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12009674..12010164 | 507..17 | 2455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:57:53 has no hits.
BO17240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:25 Download gff for
BO17240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3571-PB | 1..490 | 17..506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:30:03 Download gff for
BO17240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KLHL18-RB | 271..760 | 17..506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:26:33 Download gff for
BO17240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KLHL18-RB | 271..760 | 17..506 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:26:33 Download gff for
BO17240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12009675..12010164 | 17..506 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:30:03 Download gff for
BO17240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7835397..7835886 | 17..506 | 100 | | Minus |
BO17240.complete Sequence
1648 bp assembled on 2007-03-23
GenBank Submission: FJ634064
> BO17240.complete
GAAGTTATCAGTCGACATGCCATCCCAATTATTGCAGGTTGAAGATCAGA
CCTTCTCAGCGCACCGCGTTGTGCTGGCGGCCACCATCCCGTATTTCTAT
GCGATGTTCACCAACAACATGGCAGAGAGTCGGATCAAGGAGATCACCAT
GAAGGAGAGCGCCATAGAGCCAAGTGCCCTGGAGAGTCTGATCAACTATG
TTTACAGCGGCCAAGTGCGCATCGACAACCAGAATGTGCAGAACCTGATG
GTGGGCGCCAGCTTCCTGCAATTGTCCAACGTGCGGGATGCCTGTGCCAG
TTTCCTGATCTCCCGCTTTCATCCGCACAATGTCCTGGGAATCCGCACCT
TCGCCGACTCCATGATCTGCCGGCAGCTAATCGACGCTGCCGACAAGTAT
ATTGATCAAAACTTTGCCAAAGTCTCGCAGTCGGAGGAGTTTCTCGCCCT
GGACTGCGAACAATTGCTGGAGCTGATGCGCCGGGACGAACTCAACGTAC
GCACCGAGGAGGTCATCTTCGAGGCCTGCATGAAGTGGGTCAAGTACGCA
GAAGACAAGCGCTCTGAGCTCTTTCCTCAGGTCCTGGCTGCAGTGCGTTT
GCCATTGCTCTCGCCTCAGTTCCTGGCGGACCGTGTGGCCCGCGAGGAAC
TCATTCGATCCTCGCACCAATGCCGTGATCTCCTAGACGAGGCCAAGGAC
TTTCACCTCATGCCCGAGCGCAGGGGTCTGCTGCAGAGCTTTCGCACGCG
CCAGAGATCCGGTGAGTTCTTTACCGGACAAATATACGCCGTGGGAGGAC
TGGCCAGCACTGGGGAATCTGTGAGCACGGTCGAGATTTACGATCCGCTC
ACCAAAAAATGGAAAATGGGCGAACAAATGTCCATGATGAGATCTCGCGT
GGGTGTGGCCGTTCTGAATGGCAAGCTGTACGCCTTTGGTGGATTCAATG
GCACCGAACGTCTGTCCACCGTTGAGGTCTACGACCCGCGCAAAAACAAG
TGGTCCCAGGGCTGTGCCATGCTCTGCAAACGCAGCGCCGTGGGCGTGGC
CGCATTGGATGATTGTATCTATGTGTGCGGCGGCTACGACGGCGTCACGT
CGCTCAACACCGTTGAAGTTTACTATCCAAAGTCTAACACTTGGAAGACT
GTTGCTCAAATGATGAAATATCGTTCGGCTGGTGGAGTTACCCAATTGAA
CGGCTACGTCTACGCCCTTGGCGGTCATGATGGGTTGTCCATATTCGATT
CGGTGGAGCGGTACGACCAGGCCGAAGATGTCTGGGTTAAGATGTCGCCC
ATGCTGAATCGTCGCTGTAGACTGGGCGTGGCCACGCTGAACGGAAAGAT
ATACGTGTGCGGCGGCTACTGCGGCAACTCATTCCTTCGATCCGTAGAGT
GCTACGACCCTCAGACGGACACCTGGAAGCTGGTGACACCAATGAATTGC
AAACGCTCGCGGGTGGCTCTGGCCGCCAACATGGGCAAACTGTGGGCCAT
CGGCGGCTATGATGGCGAGTCAAATTTGTCTACAGTCGAGGTGTACGATC
CGGAGACCGACAAATGGACCTTTATGCCGCCCATGTGCGCACACAGTGGT
GGTGTCGGAGCCGGGGTCATACGGATCGAGGCAAGCTTTCTAGACCAT
BO17240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KLHL18-RB | 1617 | CG3571-PB | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| KLHL18-RC | 1728 | CG3571-PC | 131..1725 | 36..1630 | 7975 | 100 | Plus |
| KLHL18-RA | 1728 | CG3571-PA | 131..1725 | 36..1630 | 7975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KLHL18-RB | 2199 | CG3571-RB | 271..1884 | 17..1630 | 8070 | 100 | Plus |
| KLHL18-RC | 2292 | CG3571-RC | 192..1786 | 36..1630 | 7975 | 100 | Plus |
| KLHL18-RA | 2101 | CG3571-RA | 192..1786 | 36..1630 | 7975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12009290..12010164 | 891..17 | 4375 | 100 | Minus |
| 3R | 32079331 | 3R | 12008416..12008895 | 1630..1151 | 2400 | 100 | Minus |
| 3R | 32079331 | 3R | 12008967..12009229 | 1152..890 | 1315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:10:33 has no hits.
BO17240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:25 Download gff for
BO17240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3571-RB | 1..1617 | 17..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:56 Download gff for
BO17240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3571-RB | 203..1819 | 17..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:23 Download gff for
BO17240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KLHL18-RB | 271..1884 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:26 Download gff for
BO17240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3571-RB | 203..1819 | 17..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:31 Download gff for
BO17240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KLHL18-RB | 271..1884 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:31 Download gff for
BO17240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12008414..12008895 | 1151..1632 | 99 | <- | Minus |
| 3R | 12008969..12009227 | 892..1150 | 100 | <- | Minus |
| 3R | 12009290..12010164 | 17..891 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:23 Download gff for
BO17240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7834136..7834617 | 1151..1632 | 99 | <- | Minus |
| arm_3R | 7834691..7834949 | 892..1150 | 100 | <- | Minus |
| arm_3R | 7835012..7835886 | 17..891 | 100 | | Minus |
BO17240.pep Sequence
Translation from 16 to 1648
> BO17240.pep
MPSQLLQVEDQTFSAHRVVLAATIPYFYAMFTNNMAESRIKEITMKESAI
EPSALESLINYVYSGQVRIDNQNVQNLMVGASFLQLSNVRDACASFLISR
FHPHNVLGIRTFADSMICRQLIDAADKYIDQNFAKVSQSEEFLALDCEQL
LELMRRDELNVRTEEVIFEACMKWVKYAEDKRSELFPQVLAAVRLPLLSP
QFLADRVAREELIRSSHQCRDLLDEAKDFHLMPERRGLLQSFRTRQRSGE
FFTGQIYAVGGLASTGESVSTVEIYDPLTKKWKMGEQMSMMRSRVGVAVL
NGKLYAFGGFNGTERLSTVEVYDPRKNKWSQGCAMLCKRSAVGVAALDDC
IYVCGGYDGVTSLNTVEVYYPKSNTWKTVAQMMKYRSAGGVTQLNGYVYA
LGGHDGLSIFDSVERYDQAEDVWVKMSPMLNRRCRLGVATLNGKIYVCGG
YCGNSFLRSVECYDPQTDTWKLVTPMNCKRSRVALAANMGKLWAIGGYDG
ESNLSTVEVYDPETDKWTFMPPMCAHSGGVGAGVIRIEASFLDH
BO17240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KLHL18-PB | 538 | CG3571-PB | 1..538 | 1..538 | 2814 | 100 | Plus |
| KLHL18-PC | 575 | CG3571-PC | 43..575 | 6..538 | 2785 | 99.8 | Plus |
| KLHL18-PA | 575 | CG3571-PA | 43..575 | 6..538 | 2785 | 99.8 | Plus |
| dbo-PB | 620 | CG6224-PB | 75..604 | 5..536 | 1142 | 45.6 | Plus |
| dbo-PA | 623 | CG6224-PA | 75..604 | 5..536 | 1142 | 45.6 | Plus |
