Clone Sequence Records
BO17246.3prime Sequence
762 bp (631 high quality bases) assembled on 2006-10-13
> BO17246.3prime
ATGGTCTAGAAAGCTTGCTACATTCGTGGGCGCGTCCATGCCGCAGATAA
CCGACTTAACCACCGACGCCGCCGAAATGGCAGCGAAGTTTTGCCACTTC
CTGGTGGACGTGCCGTCCTTGTAGTCAGCGATGCCCTTCACCAGTATAAA
GCTCTCTCTGCAATTGCCAATGATGCTGTCCAGCACGCTGCTCATCTCCA
CATCGGTGGCCAGTAGGCCGTACTTCCTGGCGAACTGGGTGCGCAGCTCG
TCGCTCCTCACCAGATCCCTTCCGGATCCAATGGGACCCAGATGGAGTCG
CAACCGATTGACACCGTCCACCTCGTCGGCGGCAATGGGATGGGCCACCT
CGATCACCTCGTTATTTCCAATGTTCATAAACAGTTTGTCCGTCCGCGCG
TCCGGCCGGTTGAAGTCGGCATCCGTCTTCTGGGCCAACGCCTGTTGGGC
CTGGTTCAGGTAGTCCTCCCACGGCCGCTTCACCTGCATGTTGGCCTGCA
GGCTCTCGGCGATCTGCTGCAGCGAATCGTTCACCGGGAAGTAGGTCTTC
ACGTCCTCGCCGCTCTTGTACAAGTACACGTACGGTTTCTCCTTGCTATT
GCTGATCAGTGCCCGCTGTTTGTCCACATACGAGATGACCACATCGCCCA
GTCGCACGTGCTTCTTATAGTCCGTGTAATGGGGAACGCCACCGGCTTCG
CCCACGATGAAAACATAATCGACCTTTTGGAATGTGCCCAACAAACGGGT
TGTGGTATTGCC
BO17246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12065-PA | 2064 | CG12065-RA | 1318..2061 | 762..19 | 3620 | 99.4 | Minus |
CG12065-PB | 2064 | CG12065-RB | 1318..2061 | 762..19 | 3620 | 99.4 | Minus |
CG12065-PC | 1926 | CG12065-RC | 1180..1923 | 762..19 | 3620 | 99.4 | Minus |
CG12065-PD | 1926 | CG12065-RD | 1180..1923 | 762..19 | 3620 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12065-RF | 2658 | CG12065-RF | 1551..2294 | 762..19 | 3660 | 99.5 | Minus |
CG12065-RE | 2652 | CG12065-RE | 1545..2288 | 762..19 | 3660 | 99.5 | Minus |
CG12065-RD | 2515 | CG12065-RD | 1408..2151 | 762..19 | 3660 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8587586..8588164 | 597..19 | 2895 | 100 | Minus |
X | 23542271 | X | 8587359..8587525 | 762..596 | 775 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:17:00 has no hits.
BO17246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:29 Download gff for
BO17246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-PD | 1180..1926 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:52:28 Download gff for
BO17246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-RD | 1410..2153 | 19..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:42:23 Download gff for
BO17246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-RD | 1408..2151 | 19..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:42:23 Download gff for
BO17246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8587359..8587525 | 596..762 | 97 | -> | Minus |
X | 8587588..8588164 | 19..595 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:52:28 Download gff for
BO17246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8481392..8481558 | 596..762 | 97 | -> | Minus |
arm_X | 8481621..8482197 | 19..595 | 100 | | Minus |
BO17246.5prime Sequence
770 bp (766 high quality bases) assembled on 2006-10-13
> BO17246.5prime
GAAGTTATCAGTCGACATGTCGGAGCGCAGGAGTCACATACAGATGGCGC
CGCCACCGCCGCCCCCCAAGCCAAACAAATCGCAGACAGCCAATGGAAAT
GGTATTGGGAACGGCACAGGCATAGGAACGGGCACTGGCAACGGAACCCT
GCCGAATGGCAATAAAAACTATAACAAAATTGTCGCAGTCCAAGACCAGG
AGCCGCTGGCTCAGAACTCGAGCGGCGTTCAAAGGAGCCAGTCGCCACCA
CGCACAGAACAGGTTGTGATGACGCCACGCGGTAAAACGGCCAACAGTAC
GGTGATCCTCATCGAACGCAAACTGGTCGATGAGATCAATGATCGCGTTC
ATGTCGCCGGCGGTGATCATACGGGCATCATCATTAACAAGGACACGGTC
GCCGGACAGAAGAGCGCCAGCAAGGCGGCAGCGCTATCGCTGGAATTCCG
CGTCTTTCTGGTCAGCGCCAATACGGGCAAGCATTCGCAGGAGTCGCGCA
CCCTGCGCTTCTGGTTCCGCGACTGGCTGACCAACGAGGAGAAGCAGGCG
CACATAGCCCAGGACTTCTTCAAGGAGCTGGTCAGTCCGCAGGACTTTCC
CAGAGACTACGTGGGCTTCATCAAGAAGATAATGAAGCTCCTGCAGCACG
GATACTCGGAGATCCAGTCGATCGAGATTGAGCTGCGCATCCTGGAGGAG
ACATCCGCACCACCCTCGCGACCACTTTCGCTCGAGGAATCGCAGTTCGA
ATCACCGCCGTTGACTCAGG
BO17246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12065-PC | 1926 | CG12065-RC | 1..754 | 17..770 | 3770 | 100 | Plus |
CG12065-PD | 1926 | CG12065-RD | 1..754 | 17..770 | 3770 | 100 | Plus |
CG12065-PA | 2064 | CG12065-RA | 1..709 | 17..725 | 3545 | 100 | Plus |
CG12065-PB | 2064 | CG12065-RB | 1..709 | 17..725 | 3545 | 100 | Plus |
CG12065-PA | 2064 | CG12065-RA | 791..835 | 726..770 | 225 | 100 | Plus |
CG12065-PB | 2064 | CG12065-RB | 791..835 | 726..770 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12065-RF | 2658 | CG12065-RF | 371..1125 | 16..770 | 3775 | 100 | Plus |
CG12065-RE | 2652 | CG12065-RE | 365..1119 | 16..770 | 3775 | 100 | Plus |
CG12065-RD | 2515 | CG12065-RD | 228..982 | 16..770 | 3775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8583666..8584255 | 16..605 | 2950 | 100 | Plus |
X | 23542271 | X | 8584454..8584575 | 604..725 | 610 | 100 | Plus |
X | 23542271 | X | 8585810..8585854 | 726..770 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:27:55 has no hits.
BO17246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:30 Download gff for
BO17246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-PD | 1..754 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:40:06 Download gff for
BO17246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-RD | 224..984 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:02 Download gff for
BO17246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-RD | 222..982 | 9..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:02 Download gff for
BO17246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8583660..8584255 | 9..605 | 99 | -> | Plus |
X | 8584456..8584575 | 606..725 | 100 | -> | Plus |
X | 8585810..8585854 | 726..770 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:40:06 Download gff for
BO17246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8477693..8478288 | 9..605 | 99 | -> | Plus |
arm_X | 8478489..8478608 | 606..725 | 100 | -> | Plus |
arm_X | 8479843..8479887 | 726..770 | 100 | | Plus |
BO17246.complete Sequence
1957 bp assembled on 2007-03-23
GenBank Submission: FJ634065
> BO17246.complete
GAAGTTATCAGTCGACATGTCGGAGCGCAGGAGTCACATACAGATGGCGC
CGCCACCGCCGCCCCCCAAGCCAAACAAATCGCAGACAGCCAATGGAAAT
GGTATTGGGAACGGCACAGGCATAGGAACGGGCACTGGCAACGGAACCCT
GCCGAATGGCAATAAAAACTATAACAAAATTGTCGCAGTCCAAGACCAGG
AGCCGCTGGCTCAGAACTCGAGCGGCGTTCAAAGGAGCCAGTCGCCACCA
CGCACAGAACAGGTTGTGATGACGCCACGCGGTAAAACGGCCAACAGTAC
GGTGATCCTCATCGAACGCAAACTGGTCGATGAGATCAATGATCGCGTTC
ATGTCGCCGGCGGTGATCATACGGGCATCATCATTAACAAGGACACGGTC
GCCGGACAGAAGAGCGCCAGCAAGGCGGCAGCGCTATCGCTGGAATTCCG
CGTCTTTCTGGTCAGCGCCAATACGGGCAAGCATTCGCAGGAGTCGCGCA
CCCTGCGCTTCTGGTTCCGCGACTGGCTGACCAACGAGGAGAAGCAGGCG
CACATAGCCCAGGACTTCTTCAAGGAGCTGGTCAGTCCGCAGGACTTTCC
CAGAGACTACGTGGGCTTCATCAAGAAGATAATGAAGCTCCTGCAGCACG
GATACTCGGAGATCCAGTCGATCGAGATTGAGCTGCGCATCCTGGAGGAG
ACATCCGCACCACCCTCGCGACCACTTTCGCTCGAGGAATCGCAGTTCGA
ATCACCGCCGTTGACTCAGGAGAAGGTGCTGGAGCTCATCGAGCAGGCAT
ATCCCAATCCCGTGTCCCCCGAGGATCTGGCCAAGGATTACGGCTGGAGC
GAGCAGGATGTGCTGCTGGTGATCAAGTCACTGCAGGAGCGCGGTCTGAT
CAAGTCGATGGAGTACAATGCGTACACTCGCATCCATCACGAGGACAAGG
AGATTAAGGTGGTCAAGCAGATGCCCACGATCGCCTCCAACAAGCAGCCC
ACCATTGCCATCATCACGGCGCAATATTGCGAGAAGCTCGCCGTGGACGC
AATGCTCGAGAACAAGGAGACATTCGTCCGATACACCACAGTCGGCGAAT
CGAATGTGTATACTCTGGGCAATATCGGGGCGCACAGGATCGTGAGCACC
AAGCTCCCGTCGGTGGGCAGCAATCGGGAGGCGATGACGGCGACGGGCAA
TACCACAACCCGTCTGTTGGGCACATTCCAAAAGGTCGACTATGTTTTCA
TCGTGGGCGTAGCCGGTGGCGTTCCCCACTACACGGACTATAAGAAGCAC
GTGCGACTGGGCGATGTGGTCATCTCGTATGTGGACAAACAGCGGGCACT
GATCAGCAATAGCAAGGAGAAACCGTACGTGTACTTGTACAAGAGCGGCG
AGGACGTGAAGACCTACTTCCCGGTGAACGATTCGCTGCAGCAGATCGCC
GAGAGCCTGCAGGCCAACATGCAGGTGAAGCGGCCGTGGGAGGACTACCT
GAACCAGGCCCAACAGGCGTTGGCCCAGAAGACGGATGCCGACTTCAACC
GGCCGGACGCGCGGACGGACAAACTGTTTATGAACATTGGAAATAACGAG
GTGATCGAGGTGGCCCATCCCATTGCCGCCGACGAGGTGGACGGTGTCAA
TCGGTTGCGACTCCATCTGGGTCCCATTGGATCCGGAAGGGATCTGGTGA
GGAGCGACGAGCTGCGCACCCAGTTCGCCAGGAAGTACGGCCTACTGGCC
ACCGATGTGGAGATGAGCAGCGTGCTGGACAGCATCATTGGCAATTGCAG
AGAGAGCTTTATACTGGTGAAGGGCATCGCTGACTACAAGGACGGCACGT
CCACCAGGAAGTGGCAAAACTTCGCTGCCATTTCGGCGGCGTCGGTGGTT
AAGTCGGTTATCTGCGGCATGGACGCGCCCACGAATGTAGCAAGCTTTCT
AGACCAT
BO17246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12065-RF | 1926 | CG12065-PF | 1..1923 | 17..1939 | 9615 | 100 | Plus |
CG12065-RE | 1926 | CG12065-PE | 1..1923 | 17..1939 | 9615 | 100 | Plus |
CG12065-RD | 1926 | CG12065-PD | 1..1923 | 17..1939 | 9615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12065-RF | 2658 | CG12065-RF | 371..2294 | 16..1939 | 9620 | 100 | Plus |
CG12065-RE | 2652 | CG12065-RE | 365..2288 | 16..1939 | 9620 | 100 | Plus |
CG12065-RD | 2515 | CG12065-RD | 228..2151 | 16..1939 | 9620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8583666..8584255 | 16..605 | 2950 | 100 | Plus |
X | 23542271 | X | 8587586..8588164 | 1361..1939 | 2895 | 100 | Plus |
X | 23542271 | X | 8587257..8587525 | 1094..1362 | 1345 | 100 | Plus |
X | 23542271 | X | 8585986..8586246 | 835..1095 | 1305 | 100 | Plus |
X | 23542271 | X | 8584454..8584575 | 604..725 | 610 | 100 | Plus |
X | 23542271 | X | 8585810..8585919 | 726..835 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:30:29 has no hits.
BO17246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:27 Download gff for
BO17246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-RC | 1..1926 | 17..1940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:58 Download gff for
BO17246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-RC | 332..2261 | 9..1939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:47 Download gff for
BO17246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-RD | 231..2153 | 17..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:27 Download gff for
BO17246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-RC | 332..2261 | 9..1939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:06 Download gff for
BO17246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12065-RD | 229..2151 | 17..1941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:06 Download gff for
BO17246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8585810..8585918 | 726..834 | 100 | -> | Plus |
X | 8585986..8586245 | 835..1094 | 100 | -> | Plus |
X | 8587258..8587525 | 1095..1362 | 100 | -> | Plus |
X | 8583667..8584255 | 17..605 | 100 | -> | Plus |
X | 8584456..8584575 | 606..725 | 100 | -> | Plus |
X | 8587588..8588164 | 1363..1941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:47 Download gff for
BO17246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8477700..8478288 | 17..605 | 100 | -> | Plus |
arm_X | 8478489..8478608 | 606..725 | 100 | -> | Plus |
arm_X | 8479843..8479951 | 726..834 | 100 | -> | Plus |
arm_X | 8480019..8480278 | 835..1094 | 100 | -> | Plus |
arm_X | 8481291..8481558 | 1095..1362 | 100 | -> | Plus |
arm_X | 8481621..8482197 | 1363..1941 | 99 | | Plus |
BO17246.pep Sequence
Translation from 16 to 1957
> BO17246.pep
MSERRSHIQMAPPPPPPKPNKSQTANGNGIGNGTGIGTGTGNGTLPNGNK
NYNKIVAVQDQEPLAQNSSGVQRSQSPPRTEQVVMTPRGKTANSTVILIE
RKLVDEINDRVHVAGGDHTGIIINKDTVAGQKSASKAAALSLEFRVFLVS
ANTGKHSQESRTLRFWFRDWLTNEEKQAHIAQDFFKELVSPQDFPRDYVG
FIKKIMKLLQHGYSEIQSIEIELRILEETSAPPSRPLSLEESQFESPPLT
QEKVLELIEQAYPNPVSPEDLAKDYGWSEQDVLLVIKSLQERGLIKSMEY
NAYTRIHHEDKEIKVVKQMPTIASNKQPTIAIITAQYCEKLAVDAMLENK
ETFVRYTTVGESNVYTLGNIGAHRIVSTKLPSVGSNREAMTATGNTTTRL
LGTFQKVDYVFIVGVAGGVPHYTDYKKHVRLGDVVISYVDKQRALISNSK
EKPYVYLYKSGEDVKTYFPVNDSLQQIAESLQANMQVKRPWEDYLNQAQQ
ALAQKTDADFNRPDARTDKLFMNIGNNEVIEVAHPIAADEVDGVNRLRLH
LGPIGSGRDLVRSDELRTQFARKYGLLATDVEMSSVLDSIIGNCRESFIL
VKGIADYKDGTSTRKWQNFAAISAASVVKSVICGMDAPTNVASFLDH
BO17246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12065-PF | 641 | CG12065-PF | 1..641 | 1..641 | 3290 | 100 | Plus |
CG12065-PE | 641 | CG12065-PE | 1..641 | 1..641 | 3290 | 100 | Plus |
CG12065-PD | 641 | CG12065-PD | 1..641 | 1..641 | 3290 | 100 | Plus |
CG12065-PC | 641 | CG12065-PC | 1..641 | 1..641 | 3290 | 100 | Plus |
CG12065-PB | 687 | CG12065-PB | 1..687 | 1..641 | 3219 | 93.2 | Plus |