Clone BO17246 Report

Search the DGRC for BO17246

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG12065-RC
Protein status:BO17246.pep: validated full length
Sequenced Size:1957

Clone Sequence Records

BO17246.3prime Sequence

762 bp (631 high quality bases) assembled on 2006-10-13

> BO17246.3prime
ATGGTCTAGAAAGCTTGCTACATTCGTGGGCGCGTCCATGCCGCAGATAA
CCGACTTAACCACCGACGCCGCCGAAATGGCAGCGAAGTTTTGCCACTTC
CTGGTGGACGTGCCGTCCTTGTAGTCAGCGATGCCCTTCACCAGTATAAA
GCTCTCTCTGCAATTGCCAATGATGCTGTCCAGCACGCTGCTCATCTCCA
CATCGGTGGCCAGTAGGCCGTACTTCCTGGCGAACTGGGTGCGCAGCTCG
TCGCTCCTCACCAGATCCCTTCCGGATCCAATGGGACCCAGATGGAGTCG
CAACCGATTGACACCGTCCACCTCGTCGGCGGCAATGGGATGGGCCACCT
CGATCACCTCGTTATTTCCAATGTTCATAAACAGTTTGTCCGTCCGCGCG
TCCGGCCGGTTGAAGTCGGCATCCGTCTTCTGGGCCAACGCCTGTTGGGC
CTGGTTCAGGTAGTCCTCCCACGGCCGCTTCACCTGCATGTTGGCCTGCA
GGCTCTCGGCGATCTGCTGCAGCGAATCGTTCACCGGGAAGTAGGTCTTC
ACGTCCTCGCCGCTCTTGTACAAGTACACGTACGGTTTCTCCTTGCTATT
GCTGATCAGTGCCCGCTGTTTGTCCACATACGAGATGACCACATCGCCCA
GTCGCACGTGCTTCTTATAGTCCGTGTAATGGGGAACGCCACCGGCTTCG
CCCACGATGAAAACATAATCGACCTTTTGGAATGTGCCCAACAAACGGGT
TGTGGTATTGCC

BO17246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-PA 2064 CG12065-RA 1318..2061 762..19 3620 99.4 Minus
CG12065-PB 2064 CG12065-RB 1318..2061 762..19 3620 99.4 Minus
CG12065-PC 1926 CG12065-RC 1180..1923 762..19 3620 99.4 Minus
CG12065-PD 1926 CG12065-RD 1180..1923 762..19 3620 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-RF 2658 CG12065-RF 1551..2294 762..19 3660 99.5 Minus
CG12065-RE 2652 CG12065-RE 1545..2288 762..19 3660 99.5 Minus
CG12065-RD 2515 CG12065-RD 1408..2151 762..19 3660 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8587586..8588164 597..19 2895 100 Minus
X 23542271 X 8587359..8587525 762..596 775 97.6 Minus
Blast to na_te.dros performed on 2015-02-11 18:17:00 has no hits.

BO17246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:29 Download gff for BO17246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12065-PD 1180..1926 18..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:52:28 Download gff for BO17246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12065-RD 1410..2153 19..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:42:23 Download gff for BO17246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12065-RD 1408..2151 19..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:42:23 Download gff for BO17246.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8587359..8587525 596..762 97 -> Minus
X 8587588..8588164 19..595 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:52:28 Download gff for BO17246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8481392..8481558 596..762 97 -> Minus
arm_X 8481621..8482197 19..595 100   Minus

BO17246.5prime Sequence

770 bp (766 high quality bases) assembled on 2006-10-13

> BO17246.5prime
GAAGTTATCAGTCGACATGTCGGAGCGCAGGAGTCACATACAGATGGCGC
CGCCACCGCCGCCCCCCAAGCCAAACAAATCGCAGACAGCCAATGGAAAT
GGTATTGGGAACGGCACAGGCATAGGAACGGGCACTGGCAACGGAACCCT
GCCGAATGGCAATAAAAACTATAACAAAATTGTCGCAGTCCAAGACCAGG
AGCCGCTGGCTCAGAACTCGAGCGGCGTTCAAAGGAGCCAGTCGCCACCA
CGCACAGAACAGGTTGTGATGACGCCACGCGGTAAAACGGCCAACAGTAC
GGTGATCCTCATCGAACGCAAACTGGTCGATGAGATCAATGATCGCGTTC
ATGTCGCCGGCGGTGATCATACGGGCATCATCATTAACAAGGACACGGTC
GCCGGACAGAAGAGCGCCAGCAAGGCGGCAGCGCTATCGCTGGAATTCCG
CGTCTTTCTGGTCAGCGCCAATACGGGCAAGCATTCGCAGGAGTCGCGCA
CCCTGCGCTTCTGGTTCCGCGACTGGCTGACCAACGAGGAGAAGCAGGCG
CACATAGCCCAGGACTTCTTCAAGGAGCTGGTCAGTCCGCAGGACTTTCC
CAGAGACTACGTGGGCTTCATCAAGAAGATAATGAAGCTCCTGCAGCACG
GATACTCGGAGATCCAGTCGATCGAGATTGAGCTGCGCATCCTGGAGGAG
ACATCCGCACCACCCTCGCGACCACTTTCGCTCGAGGAATCGCAGTTCGA
ATCACCGCCGTTGACTCAGG

BO17246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-PC 1926 CG12065-RC 1..754 17..770 3770 100 Plus
CG12065-PD 1926 CG12065-RD 1..754 17..770 3770 100 Plus
CG12065-PA 2064 CG12065-RA 1..709 17..725 3545 100 Plus
CG12065-PB 2064 CG12065-RB 1..709 17..725 3545 100 Plus
CG12065-PA 2064 CG12065-RA 791..835 726..770 225 100 Plus
CG12065-PB 2064 CG12065-RB 791..835 726..770 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-RF 2658 CG12065-RF 371..1125 16..770 3775 100 Plus
CG12065-RE 2652 CG12065-RE 365..1119 16..770 3775 100 Plus
CG12065-RD 2515 CG12065-RD 228..982 16..770 3775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8583666..8584255 16..605 2950 100 Plus
X 23542271 X 8584454..8584575 604..725 610 100 Plus
X 23542271 X 8585810..8585854 726..770 225 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:27:55 has no hits.

BO17246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:30 Download gff for BO17246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12065-PD 1..754 17..770 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:40:06 Download gff for BO17246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12065-RD 224..984 9..770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:02 Download gff for BO17246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12065-RD 222..982 9..770 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:02 Download gff for BO17246.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8583660..8584255 9..605 99 -> Plus
X 8584456..8584575 606..725 100 -> Plus
X 8585810..8585854 726..770 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:40:06 Download gff for BO17246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8477693..8478288 9..605 99 -> Plus
arm_X 8478489..8478608 606..725 100 -> Plus
arm_X 8479843..8479887 726..770 100   Plus

BO17246.complete Sequence

1957 bp assembled on 2007-03-23

GenBank Submission: FJ634065

> BO17246.complete
GAAGTTATCAGTCGACATGTCGGAGCGCAGGAGTCACATACAGATGGCGC
CGCCACCGCCGCCCCCCAAGCCAAACAAATCGCAGACAGCCAATGGAAAT
GGTATTGGGAACGGCACAGGCATAGGAACGGGCACTGGCAACGGAACCCT
GCCGAATGGCAATAAAAACTATAACAAAATTGTCGCAGTCCAAGACCAGG
AGCCGCTGGCTCAGAACTCGAGCGGCGTTCAAAGGAGCCAGTCGCCACCA
CGCACAGAACAGGTTGTGATGACGCCACGCGGTAAAACGGCCAACAGTAC
GGTGATCCTCATCGAACGCAAACTGGTCGATGAGATCAATGATCGCGTTC
ATGTCGCCGGCGGTGATCATACGGGCATCATCATTAACAAGGACACGGTC
GCCGGACAGAAGAGCGCCAGCAAGGCGGCAGCGCTATCGCTGGAATTCCG
CGTCTTTCTGGTCAGCGCCAATACGGGCAAGCATTCGCAGGAGTCGCGCA
CCCTGCGCTTCTGGTTCCGCGACTGGCTGACCAACGAGGAGAAGCAGGCG
CACATAGCCCAGGACTTCTTCAAGGAGCTGGTCAGTCCGCAGGACTTTCC
CAGAGACTACGTGGGCTTCATCAAGAAGATAATGAAGCTCCTGCAGCACG
GATACTCGGAGATCCAGTCGATCGAGATTGAGCTGCGCATCCTGGAGGAG
ACATCCGCACCACCCTCGCGACCACTTTCGCTCGAGGAATCGCAGTTCGA
ATCACCGCCGTTGACTCAGGAGAAGGTGCTGGAGCTCATCGAGCAGGCAT
ATCCCAATCCCGTGTCCCCCGAGGATCTGGCCAAGGATTACGGCTGGAGC
GAGCAGGATGTGCTGCTGGTGATCAAGTCACTGCAGGAGCGCGGTCTGAT
CAAGTCGATGGAGTACAATGCGTACACTCGCATCCATCACGAGGACAAGG
AGATTAAGGTGGTCAAGCAGATGCCCACGATCGCCTCCAACAAGCAGCCC
ACCATTGCCATCATCACGGCGCAATATTGCGAGAAGCTCGCCGTGGACGC
AATGCTCGAGAACAAGGAGACATTCGTCCGATACACCACAGTCGGCGAAT
CGAATGTGTATACTCTGGGCAATATCGGGGCGCACAGGATCGTGAGCACC
AAGCTCCCGTCGGTGGGCAGCAATCGGGAGGCGATGACGGCGACGGGCAA
TACCACAACCCGTCTGTTGGGCACATTCCAAAAGGTCGACTATGTTTTCA
TCGTGGGCGTAGCCGGTGGCGTTCCCCACTACACGGACTATAAGAAGCAC
GTGCGACTGGGCGATGTGGTCATCTCGTATGTGGACAAACAGCGGGCACT
GATCAGCAATAGCAAGGAGAAACCGTACGTGTACTTGTACAAGAGCGGCG
AGGACGTGAAGACCTACTTCCCGGTGAACGATTCGCTGCAGCAGATCGCC
GAGAGCCTGCAGGCCAACATGCAGGTGAAGCGGCCGTGGGAGGACTACCT
GAACCAGGCCCAACAGGCGTTGGCCCAGAAGACGGATGCCGACTTCAACC
GGCCGGACGCGCGGACGGACAAACTGTTTATGAACATTGGAAATAACGAG
GTGATCGAGGTGGCCCATCCCATTGCCGCCGACGAGGTGGACGGTGTCAA
TCGGTTGCGACTCCATCTGGGTCCCATTGGATCCGGAAGGGATCTGGTGA
GGAGCGACGAGCTGCGCACCCAGTTCGCCAGGAAGTACGGCCTACTGGCC
ACCGATGTGGAGATGAGCAGCGTGCTGGACAGCATCATTGGCAATTGCAG
AGAGAGCTTTATACTGGTGAAGGGCATCGCTGACTACAAGGACGGCACGT
CCACCAGGAAGTGGCAAAACTTCGCTGCCATTTCGGCGGCGTCGGTGGTT
AAGTCGGTTATCTGCGGCATGGACGCGCCCACGAATGTAGCAAGCTTTCT
AGACCAT

BO17246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-RF 1926 CG12065-PF 1..1923 17..1939 9615 100 Plus
CG12065-RE 1926 CG12065-PE 1..1923 17..1939 9615 100 Plus
CG12065-RD 1926 CG12065-PD 1..1923 17..1939 9615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-RF 2658 CG12065-RF 371..2294 16..1939 9620 100 Plus
CG12065-RE 2652 CG12065-RE 365..2288 16..1939 9620 100 Plus
CG12065-RD 2515 CG12065-RD 228..2151 16..1939 9620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8583666..8584255 16..605 2950 100 Plus
X 23542271 X 8587586..8588164 1361..1939 2895 100 Plus
X 23542271 X 8587257..8587525 1094..1362 1345 100 Plus
X 23542271 X 8585986..8586246 835..1095 1305 100 Plus
X 23542271 X 8584454..8584575 604..725 610 100 Plus
X 23542271 X 8585810..8585919 726..835 550 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:30:29 has no hits.

BO17246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:27 Download gff for BO17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 1..1926 17..1940 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:58 Download gff for BO17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 332..2261 9..1939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:47 Download gff for BO17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RD 231..2153 17..1941 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:27 Download gff for BO17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RC 332..2261 9..1939 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:06 Download gff for BO17246.complete
Subject Subject Range Query Range Percent Splice Strand
CG12065-RD 229..2151 17..1941 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:06 Download gff for BO17246.complete
Subject Subject Range Query Range Percent Splice Strand
X 8585810..8585918 726..834 100 -> Plus
X 8585986..8586245 835..1094 100 -> Plus
X 8587258..8587525 1095..1362 100 -> Plus
X 8583667..8584255 17..605 100 -> Plus
X 8584456..8584575 606..725 100 -> Plus
X 8587588..8588164 1363..1941 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:47 Download gff for BO17246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8477700..8478288 17..605 100 -> Plus
arm_X 8478489..8478608 606..725 100 -> Plus
arm_X 8479843..8479951 726..834 100 -> Plus
arm_X 8480019..8480278 835..1094 100 -> Plus
arm_X 8481291..8481558 1095..1362 100 -> Plus
arm_X 8481621..8482197 1363..1941 99   Plus

BO17246.pep Sequence

Translation from 16 to 1957

> BO17246.pep
MSERRSHIQMAPPPPPPKPNKSQTANGNGIGNGTGIGTGTGNGTLPNGNK
NYNKIVAVQDQEPLAQNSSGVQRSQSPPRTEQVVMTPRGKTANSTVILIE
RKLVDEINDRVHVAGGDHTGIIINKDTVAGQKSASKAAALSLEFRVFLVS
ANTGKHSQESRTLRFWFRDWLTNEEKQAHIAQDFFKELVSPQDFPRDYVG
FIKKIMKLLQHGYSEIQSIEIELRILEETSAPPSRPLSLEESQFESPPLT
QEKVLELIEQAYPNPVSPEDLAKDYGWSEQDVLLVIKSLQERGLIKSMEY
NAYTRIHHEDKEIKVVKQMPTIASNKQPTIAIITAQYCEKLAVDAMLENK
ETFVRYTTVGESNVYTLGNIGAHRIVSTKLPSVGSNREAMTATGNTTTRL
LGTFQKVDYVFIVGVAGGVPHYTDYKKHVRLGDVVISYVDKQRALISNSK
EKPYVYLYKSGEDVKTYFPVNDSLQQIAESLQANMQVKRPWEDYLNQAQQ
ALAQKTDADFNRPDARTDKLFMNIGNNEVIEVAHPIAADEVDGVNRLRLH
LGPIGSGRDLVRSDELRTQFARKYGLLATDVEMSSVLDSIIGNCRESFIL
VKGIADYKDGTSTRKWQNFAAISAASVVKSVICGMDAPTNVASFLDH

BO17246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12065-PF 641 CG12065-PF 1..641 1..641 3290 100 Plus
CG12065-PE 641 CG12065-PE 1..641 1..641 3290 100 Plus
CG12065-PD 641 CG12065-PD 1..641 1..641 3290 100 Plus
CG12065-PC 641 CG12065-PC 1..641 1..641 3290 100 Plus
CG12065-PB 687 CG12065-PB 1..687 1..641 3219 93.2 Plus