Clone Sequence Records
BO17257.3prime Sequence
434 bp (351 high quality bases) assembled on 2006-10-13
> BO17257.3prime
ATGGTCTAGAAAGCTTGCATTCCAGTTGCCGTCATCATTAGCCCCAATTG
AGTGGATTTGGCTATCGTAAGTGCCATAGGGGTCAACCTCCTGATACTCC
TGATCTCCTTGATCATCTAGATCCTCCTGATCCTCAGAGTCCTCTTCATT
GTCGCCGAACAATTCGATATTATCATCTGTATCTGGTGCTTCTGTCGGTT
CAGTTGTAGGTTCAGTTGTGGGTTCAGTTGTGGGTTCAGTTGTGGGTTCA
GTTGTGGGTTCAGTTGTGGGTTCTGTTGTGGGTTCAGTTGTGGTGGTGGT
GGTGGTTCTGCTAGTGGTTGTGGTGGGGTTGGTGGTTGTGGTTGGNNTGA
TTGGAGTCACGGGTTTCTTCACTAGTTCTCCTCACTCCGGATTGCTTGGA
TCGAAGTCACAGCGAATTTTCCTGTTTATTTCGC
BO17257.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1468-PA | 621 | CG1468-RA | 209..618 | 428..19 | 1862 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1468-RA | 735 | CG1468-RA | 226..640 | 433..19 | 1948 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9878822..9879184 | 381..19 | 1733 | 98.3 | Minus |
| X | 23542271 | X | 9878647..9878697 | 433..383 | 225 | 96.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:47:05 has no hits.
BO17257.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:35 Download gff for
BO17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-PA | 202..621 | 18..434 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:00 Download gff for
BO17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-RA | 224..640 | 19..434 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:18 Download gff for
BO17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-RA | 224..640 | 19..434 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:18 Download gff for
BO17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9878645..9878696 | 384..434 | 94 | -> | Minus |
| X | 9878820..9879184 | 19..383 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:00 Download gff for
BO17257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9772678..9772729 | 384..434 | 94 | -> | Minus |
| arm_X | 9772853..9773217 | 19..383 | 98 | | Minus |
BO17257.5prime Sequence
650 bp (634 high quality bases) assembled on 2006-10-13
> BO17257.5prime
GAAGTTATCAGTCGACATGAGCAGATCCCTGTTTCTAATTCTTTTATTGG
GAATCTCCTGCCTGGAGATTTTCCAGGCTCGCTCTCTTCTGGAGGGGAGA
AAACAAAGATTTGTGCGCAGACGCATATCACCCGACGATCCTGATCTCGA
GATCATCGAGGTCAAGGACGTCTACTACCGAAAGCGGCCCAAGAAGTTGG
TTGTCCAGCTCGATGATGACGAATTAAACTGGAAAATTCGCTGTGACTTC
GATCCAAGCAATCCGGAGTGTGGAGATGTAGTGAAGAAACCCGTGGCTCC
TATCAGGCCAACCACAACCACCAACCCCACCACAACCACTAGCAGAACCA
CCACCACCACCACAACTGAACCCACAACAGAACCCACAACTGAACCCACA
ACTGAACCCACAACTGAACCCACAACTGAACCCACAACTGAACCTACAAC
TGAACCGACAGAAGCACCAGATACAGATGATAATATCGAATTGTTCGGCG
ACAATGAAGAGGACTCTGAGGATCAGGAGGATCTAGATGATCAAGGAGAT
CAGGAGTATCAGGAGGTTGACCCCTATGGCACTTACGATAGCCAAATCCA
CTCAATTGGGGCTAATGATGACGGCAACTGGAATGCAAGCTTTCTAGACC
BO17257.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1468-PA | 621 | CG1468-RA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1468-RA | 735 | CG1468-RA | 23..640 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9878820..9879184 | 270..634 | 1825 | 100 | Plus |
| X | 23542271 | X | 9878444..9878698 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:16:52 has no hits.
BO17257.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:35 Download gff for
BO17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-PA | 1..621 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:28 Download gff for
BO17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-RA | 19..640 | 13..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:25 Download gff for
BO17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-RA | 19..640 | 13..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:25 Download gff for
BO17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9878820..9879184 | 270..634 | 100 | | Plus |
| X | 9878440..9878696 | 13..269 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:28 Download gff for
BO17257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9772473..9772729 | 13..269 | 99 | -> | Plus |
| arm_X | 9772853..9773217 | 270..634 | 100 | | Plus |
BO17257.complete Sequence
652 bp assembled on 2006-10-11
GenBank Submission: FJ634066
> BO17257.complete
GAAGTTATCAGTCGACATGAGCAGATCCCTGTTTCTAATTCTTTTATTGG
GAATCTCCTGCCTGGAGATTTTCCAGGCTCGCTCTCTTCTGGAGGGGAGA
AAACAAAGATTTGTGCGCAGACGCATATCACCCGACGATCCTGATCTCGA
GATCATCGAGGTCAAGGACGTCTACTACCGAAAGCGGCCCAAGAAGTTGG
TTGTCCAGCTCGATGATGACGAATTAAACTGGAAAATTCGCTGTGACTTC
GATCCAAGCAATCCGGAGTGTGGAGATGTAGTGAAGAAACCCGTGGCTCC
TATCAGGCCAACCACAACCACCAACCCCACCACAACCACTAGCAGAACCA
CCACCACCACCACAACTGAACCCACAACAGAACCCACAACTGAACCCACA
ACTGAACCCACAACTGAACCCACAACTGAACCCACAACTGAACCTACAAC
TGAACCGACAGAAGCACCAGATACAGATGATAATATCGAATTGTTCGGCG
ACAATGAAGAGGACTCTGAGGATCAGGAGGATCTAGATGATCAAGGAGAT
CAGGAGTATCAGGAGGTTGACCCCTATGGCACTTACGATAGCCAAATCCA
CTCAATTGGGGCTAATGATGACGGCAACTGGAATGCAAGCTTTCTAGACC
AT
BO17257.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1468-RA | 621 | CG1468-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1468-RA | 735 | CG1468-RA | 23..640 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9878820..9879184 | 270..634 | 1825 | 100 | Plus |
| X | 23542271 | X | 9878444..9878698 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:13:56 has no hits.
BO17257.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:39 Download gff for
BO17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-RA | 1..621 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:51 Download gff for
BO17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-RA | 19..640 | 13..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:07 Download gff for
BO17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-RA | 23..640 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:39 Download gff for
BO17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-RA | 19..640 | 13..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:52 Download gff for
BO17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1468-RA | 23..640 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:52 Download gff for
BO17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9878444..9878696 | 17..269 | 100 | -> | Plus |
| X | 9878820..9879184 | 270..636 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:07 Download gff for
BO17257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9772477..9772729 | 17..269 | 100 | -> | Plus |
| arm_X | 9772853..9773217 | 270..636 | 99 | | Plus |
BO17257.pep Sequence
Translation from 16 to 652
> BO17257.pep
MSRSLFLILLLGISCLEIFQARSLLEGRKQRFVRRRISPDDPDLEIIEVK
DVYYRKRPKKLVVQLDDDELNWKIRCDFDPSNPECGDVVKKPVAPIRPTT
TTNPTTTTSRTTTTTTTEPTTEPTTEPTTEPTTEPTTEPTTEPTTEPTEA
PDTDDNIELFGDNEEDSEDQEDLDDQGDQEYQEVDPYGTYDSQIHSIGAN
DDGNWNASFLDH
BO17257.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1468-PA | 206 | CG1468-PA | 1..206 | 1..206 | 1102 | 100 | Plus |
| Mur11Da-PD | 626 | CG32644-PD | 299..390 | 79..159 | 158 | 51.1 | Plus |
| CG43710-PA | 340 | CG43710-PA | 107..179 | 80..151 | 157 | 47.9 | Plus |
| CG14420-PA | 293 | CG14420-PA | 62..148 | 99..180 | 154 | 42.5 | Plus |
| CG43710-PA | 340 | CG43710-PA | 116..193 | 81..158 | 151 | 43.6 | Plus |
| CG43710-PA | 340 | CG43710-PA | 101..175 | 78..151 | 150 | 45.3 | Plus |
| CG14420-PA | 293 | CG14420-PA | 49..142 | 89..185 | 147 | 37.1 | Plus |
| CG14419-PA | 195 | CG14419-PA | 16..91 | 85..153 | 147 | 42.1 | Plus |
