Clone Sequence Records
BO17264.3prime Sequence
832 bp (704 high quality bases) assembled on 2006-10-13
> BO17264.3prime
ATGGTCTAGAAAGCTTGCCGCATGTGAAATCGAGTGCTGGCTGCCGTGCT
TGCCCAAAATGGGCTGATCAGGAGACAGATCTTCCGGTGGGCTACCATTG
TGCGTGTCCGGTGAGTGGTCGTCCAGCAGCTTGCTACCATTGTGCTTGTT
CAGTTCTTTCAGCTCGACAGGTGTGGTCTTTTCGAATGTTGGCGGGATTA
GTAATCGATTGCTGCACTGTAGCCAAAACATGGAGACCAGCATCATGGCC
GAAGTAACGCCGAAGGTCCAGAACGTACCTAGGCGCGTGTAGATGGATCC
CACGAAGACTGGACCAAGGACGCGGGACAGACAACCCGAACCGGTCATCC
AGCCCATCCAGACGCCCTGCGGCCGAGGTCCCAGAACTTTGGAGAATATG
GTCTGGATGAGAGTCACCCCAATGGGATATCCTATCGATGTGAAGGCAAA
TCCAATGATGAACTGCGTTAAGGTCAAGGCCGGCAGTTCGCCGCACCATT
TCTGCGTTGTGGGGCAGCCCAAGAAGATGGGATCGCTTTCGCTTAGGTTC
CAGCTGGCATTGAATGGCTGCGCCAACTTTGGCGGATCCGGACCCCAAGG
CACGAAGAGCACGCGACCGAGAAACATCAGCGAGAATCCGCCCCAGATGA
GCACATAACGCTCGGCTATAATCTTGCACATGGGCTCAATCAAAACGAAC
GTGACCAGAGAGACAATAGCTGCGGTGGTCATCATGATGCCCATGTACCA
TAGGGCCTCGTCGTTGGACCAAGCGAACATATCCATTGTCAGGGATGTGC
CCAGAGTCTCCAACAGCACAAAGTTGAATACC
BO17264.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8596-PA | 1641 | CG8596-RA | 825..1638 | 832..19 | 4045 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8596-RC | 2114 | CG8596-RC | 1204..2017 | 832..19 | 4055 | 99.9 | Minus |
| CG8596-RB | 1821 | CG8596-RB | 911..1724 | 832..19 | 4055 | 99.9 | Minus |
| CG8596-RA | 1875 | CG8596-RA | 965..1778 | 832..19 | 4055 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7342236..7342832 | 209..805 | 2970 | 99.8 | Plus |
| 3L | 28110227 | 3L | 7341981..7342170 | 19..208 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 01:21:21 has no hits.
BO17264.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:40 Download gff for
BO17264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-PA | 825..1641 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:02:18 Download gff for
BO17264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 965..1781 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:57:34 Download gff for
BO17264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 965..1781 | 15..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:57:34 Download gff for
BO17264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7341978..7342170 | 15..208 | 98 | <- | Plus |
| 3L | 7342236..7342832 | 209..805 | 99 | <- | Plus |
| 3L | 7342892..7342918 | 806..832 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:02:18 Download gff for
BO17264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7335078..7335270 | 15..208 | 98 | <- | Plus |
| arm_3L | 7335336..7335932 | 209..805 | 99 | <- | Plus |
| arm_3L | 7335992..7336018 | 806..832 | 100 | | Plus |
BO17264.complete Sequence
1672 bp assembled on 2010-06-24
GenBank Submission: KX795556
> BO17264.complete
GAAGTTATCAGTCGACATGGAGTTTGCCCGCCGAGTTTCCGCTCGCTTTG
AAACCAAAAGACTGCCGGAGGATGTGGACGATGGCCTGGAGACGCTGGAG
GAGTACAAGCAGCGCTGGCGCTCCGTCCGCATCATCTACTTTACGATGTT
TCTGATGGCGCTTGGCTTCAGCATCATACTCACAGGCATTTGGCCCTACC
TCAACAAGCTAGATCCCGATGCGGGCAAGGAGTTTATGGGACTGATTGTG
GCCGCCAATCCGCTGGGACAAATGATCTTCAGTCCGATCTTTGGGTGGTG
GGGCAACAAGCTGGGCAAGATTCGTCTGCCACTGCTGCTATCGCTGTCTC
TATTCACGCTGGCCAGTGGCATATACTCCTCGCTGGAACTGCGTCCGGAC
AATGTGAAGTACTGGATGCTCTCCTCGCGGTTCCTCATCGGTGTCAGCTC
GGCGAATATTGCCCTGTGCCGCTCCTATTTGTCCGCTGCGACACGAATCA
GCGAACGCACACATGCCGTTGCAATGGTTTCGCTGGCACAGGTCCTTGGA
TTCATCATTGGTCCAACTCTGCAGGCGGCAGTCACACCGCTGGGAGATCA
GGGACACGTCTGGCTGTGGGGCAAGATGCACTTCAACATGTACACGGCAT
CCGGATGGATCAATGTGCTGATGAGCATTGGAAACTTCATGATGTTCCTG
CCCGGAGTGTTTGAGGAGCACAAAATTGCAGCTCGCGAGGTGATGGTGAT
GCAGGGCGGCACATCCGAGAAGGAGACTTGGAAAGGCATCAAGCCCAGCT
ATTTATCCGCATGGACTTTGATCGTCGCCTTCTTTGTTCTGGTATTCAAC
TTTGTGCTGTTGGAGACTCTGGGCACATCCCTGACAATGGATATGTTCGC
TTGGTCCAACGACGAGGCCCTATGGTACATGGGCATCATGATGACCACCG
CAGCTATTGTCTCCCTGGTCACGTTCGTTTTGATTGAGCCCATGTGCAAG
ATTATAGCCGAGCGTTATGTGCTCATCTGGGGCGGATTCTCGCTGATGTT
TCTCGGTCGCGTGCTCTTCGTGCCTTGGGGTCCGGATCCGCCAAAGTTGG
CGCAGCCATTCAATGCCAGCTGGAACCTAAGCGAAAGCGATCCCATCTTC
TTGGGCTGCCCCACAACGCAGAAATGGTGCGGCGAACTGCCGGCCTTGAC
CTTAACGCAGTTCATCATTGGATTTGCCTTCACATCGATAGGATATCCCA
TTGGGGTGACTCTCATCCAGACCATATTCTCCAAAGTTCTGGGACCTCGG
CCGCAGGGCGTCTGGATGGGCTGGATGACCGGTTCGGGTTGTCTGTCCCG
CGTCCTTGGTCCAGTCTTCGTGGGATCCATCTACACGCGCCTAGGTACGT
TCTGGACCTTCGGCGTTACTTCGGCCATGATGCTGGTCTCCATGTTTTGG
CTACAGTGCAGCAATCGATTACTAATCCCGCCAACATTCGAAAAGACCAC
ACCTGTCGAGCTGAAAGAACTGAACAAGCACAATGGTAGCAAGCTGCTGG
ACGACCACTCACCGGACACGCACAATGGTAGCCCACCGGAAGATCTGTCT
CCTGATCAGCCCATTTTGGGCAAGCACGGCAGCCAGCACTCGATTTCACA
TGCGGCAAGCTTTCTAGACCAT
BO17264.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8596-RC | 1641 | CG8596-PC | 1..1638 | 17..1654 | 8190 | 100 | Plus |
| CG8596-RB | 1641 | CG8596-PB | 1..1638 | 17..1654 | 8190 | 100 | Plus |
| CG8596-RA | 1641 | CG8596-PA | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8596-RC | 2114 | CG8596-RC | 380..2017 | 17..1654 | 8190 | 100 | Plus |
| CG8596-RB | 1821 | CG8596-RB | 87..1724 | 17..1654 | 8190 | 100 | Plus |
| CG8596-RA | 1875 | CG8596-RA | 141..1778 | 17..1654 | 8190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7342236..7342832 | 1464..868 | 2985 | 100 | Minus |
| 3L | 28110227 | 3L | 7343103..7343612 | 716..207 | 2550 | 100 | Minus |
| 3L | 28110227 | 3L | 7343668..7343859 | 208..17 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 7341981..7342170 | 1654..1465 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 7342892..7343045 | 867..714 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:45:28 has no hits.
BO17264.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:36 Download gff for
BO17264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 139..1776 | 17..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:53 Download gff for
BO17264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 141..1778 | 17..1656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:10 Download gff for
BO17264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8596-RA | 141..1778 | 17..1656 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:10 Download gff for
BO17264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7341979..7342170 | 1465..1656 | 98 | <- | Minus |
| 3L | 7342236..7342832 | 868..1464 | 100 | <- | Minus |
| 3L | 7342892..7343043 | 716..867 | 100 | <- | Minus |
| 3L | 7343104..7343610 | 209..715 | 100 | <- | Minus |
| 3L | 7343668..7343859 | 17..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:53 Download gff for
BO17264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7335079..7335270 | 1465..1656 | 98 | <- | Minus |
| arm_3L | 7335336..7335932 | 868..1464 | 100 | <- | Minus |
| arm_3L | 7335992..7336143 | 716..867 | 100 | <- | Minus |
| arm_3L | 7336204..7336710 | 209..715 | 100 | <- | Minus |
| arm_3L | 7336768..7336959 | 17..208 | 100 | | Minus |
BO17264.pep Sequence
Translation from 16 to 1672
> BO17264.pep
MEFARRVSARFETKRLPEDVDDGLETLEEYKQRWRSVRIIYFTMFLMALG
FSIILTGIWPYLNKLDPDAGKEFMGLIVAANPLGQMIFSPIFGWWGNKLG
KIRLPLLLSLSLFTLASGIYSSLELRPDNVKYWMLSSRFLIGVSSANIAL
CRSYLSAATRISERTHAVAMVSLAQVLGFIIGPTLQAAVTPLGDQGHVWL
WGKMHFNMYTASGWINVLMSIGNFMMFLPGVFEEHKIAAREVMVMQGGTS
EKETWKGIKPSYLSAWTLIVAFFVLVFNFVLLETLGTSLTMDMFAWSNDE
ALWYMGIMMTTAAIVSLVTFVLIEPMCKIIAERYVLIWGGFSLMFLGRVL
FVPWGPDPPKLAQPFNASWNLSESDPIFLGCPTTQKWCGELPALTLTQFI
IGFAFTSIGYPIGVTLIQTIFSKVLGPRPQGVWMGWMTGSGCLSRVLGPV
FVGSIYTRLGTFWTFGVTSAMMLVSMFWLQCSNRLLIPPTFEKTTPVELK
ELNKHNGSKLLDDHSPDTHNGSPPEDLSPDQPILGKHGSQHSISHAASFL
DH
BO17264.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8596-PC | 546 | CG8596-PC | 1..546 | 1..546 | 2892 | 100 | Plus |
| CG8596-PB | 546 | CG8596-PB | 1..546 | 1..546 | 2892 | 100 | Plus |
| CG8596-PA | 546 | CG8596-PA | 1..546 | 1..546 | 2892 | 100 | Plus |
