Clone BO17268 Report

Search the DGRC for BO17268

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:68
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO17268.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO17268.3prime Sequence

740 bp (604 high quality bases) assembled on 2006-10-13

> BO17268.3prime
ATGGTCTAGAAAGCTTGCTGTGGTCTCGCCCTTGCCGCTGTCATCAGCGG
ATTCGGCATCGTCCGCTCCGGCGGCGGCCGCCTCTCTGACCAGCCCGTTG
TTCTTGCACTTGCTGCTGCCTCCATTATTTTTGCTAATCGGCGCCGTGGC
ACTGTCCTCATCTTCATCCTCGTCCTCATCATCGTCGTCGTCCTCATCGA
AGTCATCATCAGATGGCAGATCATCCTCCGTCTCCAGATCGAAATCATCA
TCGTAGAAGTTGGCATCCAGGCCAGACTCCGTTGTGGGCTTGCGCGTGGG
CTTCAGGCAGTAGTCCTCCAGGGTCATCGGAACCACAATGCCCTCCCGCT
TGGCCTCGGCATTGGCGGCCAGTGCCTGTTTTCGTATGATGTTTGGATAC
TCATTGTCCTTACCCTGTGAGTCCCGCCATCGGCGGTACATGACCGAGGC
GTCCACGTTGGCCGGCGAGAATGTGTTCGGCTCATTGAGCAGCGATATGA
CCGACAGCAGGATGGTGCGCACATTCTGCGTGGGATTCCAGCGTTCGCAG
GGCAGCTCGCCACTCTGCGGATCATCCACCGGCGGATGTAGTATGGATAT
GCACAGATCACCGTTCTCGTAAACATTCGGATGCCAGACCTTCGTCAGGA
AGCGTATGGATGGCGGTGAATATGGATAGTCGTGCGGGAACTTCATGTGC
GCCTTGAAGTAGCCGCCCTGGTAGAGGGTGTCCGGTGGCC

BO17268.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PC 1026 CG7656-RC 302..1023 740..19 3585 99.8 Minus
CG7656-PA 954 CG7656-RA 560..951 410..19 1960 100 Minus
CG7656-PB 810 CG7656-RB 416..807 410..19 1960 100 Minus
CG7656-PA 954 CG7656-RA 236..562 740..414 1610 99.6 Minus
CG7656-PB 810 CG7656-RB 141..418 691..414 1365 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RE 1234 CG7656-RE 388..1109 740..19 3595 99.9 Minus
CG7656-RD 1410 CG7656-RD 538..1259 740..19 3595 99.9 Minus
CG7656-RF 2027 CG7656-RF 538..1253 740..19 3495 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15586205..15586603 19..417 1995 100 Plus
3L 28110227 3L 15587004..15587330 414..740 1620 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 17:17:17 has no hits.

BO17268.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:43 Download gff for BO17268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-PC 302..1026 15..740 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:32 Download gff for BO17268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 538..1262 15..740 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:30 Download gff for BO17268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 538..1262 15..740 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:30 Download gff for BO17268.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15586202..15586600 15..414 99 <- Plus
3L 15587005..15587330 415..740 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:32 Download gff for BO17268.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15579302..15579700 15..414 99 <- Plus
arm_3L 15580105..15580430 415..740 99   Plus

BO17268.5prime Sequence

738 bp (631 high quality bases) assembled on 2006-10-13

> BO17268.5prime
GAAGTTATCAGTCGACATGTCTCGGCATTTGGAAAACTTCTTTACCAACA
GAGTACGGCGACAACTGCAAGTGGCTGAACAAATGACCACCGCCGCCTCC
ACATCGCAGCATGCGACATCGTCCTCCACAATGATGGCGGGCTCTGGATC
CTTGGCGACCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCCAGCAGCT
CGGCCGTTCGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCG
GTGGAGGGATTCCGCGTCAAGCTGATCAACGACGACAATCTGTTCGAATG
GGAGGTGGCAATCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACT
TCAAGGCGCACATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCC
ATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGA
TCTGTGCATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCG
AGCTGCCCTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTG
CTGTCGGTCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAA
CGTGGACGCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGG
ACAATGAGTATCCAAACATCATACGAAAACAGGCACTGGCCGCCAATGCC
GAGGCCAAGCGGGAGGGCATTGTGGTTCCGATGACCCT

BO17268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PC 1026 CG7656-RC 1..722 17..738 3610 100 Plus
CG7656-PA 954 CG7656-RA 1..562 83..644 2810 100 Plus
CG7656-PB 810 CG7656-RB 141..418 367..644 1390 100 Plus
CG7656-PB 810 CG7656-RB 1..141 83..223 705 100 Plus
CG7656-PA 954 CG7656-RA 560..650 648..738 455 100 Plus
CG7656-PB 810 CG7656-RB 416..506 648..738 455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RD 1410 CG7656-RD 234..958 14..738 3625 100 Plus
CG7656-RF 2027 CG7656-RF 234..952 14..738 3525 99.2 Plus
CG7656-RE 1234 CG7656-RE 118..808 48..738 3440 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15587004..15587634 644..14 3155 100 Minus
3L 28110227 3L 15586506..15586603 738..641 490 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:12:44 has no hits.

BO17268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:45 Download gff for BO17268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-PC 1..722 17..738 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:47 Download gff for BO17268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 229..958 7..738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:27 Download gff for BO17268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 229..958 7..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:27 Download gff for BO17268.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15586506..15586600 644..738 100 <- Minus
3L 15587005..15587631 17..643 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:47 Download gff for BO17268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15579606..15579700 644..738 100 <- Minus
arm_3L 15580105..15580731 17..643 100 -> Minus

BO17268.complete Sequence

1057 bp assembled on 2006-10-11

GenBank Submission: FJ634067

> BO17268.complete
GAAGTTATCAGTCGACATGTCTCGGCATTTGGAAAACTTCTTTACCAACA
GAGTACGGCGACAACTGCAAGTGGCTGAACAAATGACCACCGCCGCCTCC
ACATCGCAGCATGCGACATCGTCCTCCACAATGATGGCGGGCTCTGGATC
CTTGGCGACCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCCAGCAGCT
CGGCCGTTCGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCG
GTGGAGGGATTCCGCGTCAAGCTGATCAACGACGACAATCTGTTCGAATG
GGAGGTGGCAATCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACT
TCAAGGCGCACATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCC
ATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGA
TCTGTGCATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCG
AGCTGCCCTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTG
CTGTCGGTCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAA
CGTGGACGCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGG
ACAATGAGTATCCAAACATCATACGAAAACAGGCACTGGCCGCCAATGCC
GAGGCCAAGCGGGAGGGCATTGTGGTTCCGATGACCCTGGAGGACTACTG
CCTGAAGCCCACGCGCAAGCCCACAACGGAGTCTGGCCTGGATGCCAACT
TCTACGATGATGATTTCGATCTGGAGACGGAGGATGATCTGCCATCTGAT
GATGACTTCGATGAGGACGACGACGATGATGAGGACGAGGATGAAGATGA
GGACAGTGCCACGGCGCCGATTAGCAAAAATAATGGAGGCAGCAGCAAGT
GCAAGAACAACGGGCTGGTCAGAGAGGCGGCCGCCGCCGGAGCGGACGAT
GCCGAATCCGCTGATGACAGCGGCAAGGGCGAGACCACAGCAAGCTTTCT
AGACCAT

BO17268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RE 960 CG7656-PE 1..957 83..1039 4785 100 Plus
CG7656-RD 960 CG7656-PD 1..957 83..1039 4785 100 Plus
CG7656-RF 954 CG7656-PF 1..951 83..1039 4660 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-RD 1410 CG7656-RD 234..1259 14..1039 5130 100 Plus
CG7656-RF 2027 CG7656-RF 234..1253 14..1039 5005 99.4 Plus
CG7656-RE 1234 CG7656-RE 118..1109 48..1039 4945 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15587004..15587634 644..14 3155 100 Minus
3L 28110227 3L 15586205..15586603 1039..641 1995 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:09:35 has no hits.

BO17268.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:40 Download gff for BO17268.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RC 1..1026 17..1043 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:53 Download gff for BO17268.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 27..1060 7..1043 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:40 Download gff for BO17268.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 237..1259 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:40 Download gff for BO17268.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RC 27..1060 7..1043 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:32 Download gff for BO17268.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 237..1259 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:32 Download gff for BO17268.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15586203..15586600 644..1041 99 <- Minus
3L 15587005..15587631 17..643 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:40 Download gff for BO17268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15579303..15579700 644..1041 99 <- Minus
arm_3L 15580105..15580731 17..643 100   Minus

BO17268.pep Sequence

Translation from 16 to 1057

> BO17268.pep
MSRHLENFFTNRVRRQLQVAEQMTTAASTSQHATSSSTMMAGSGSLATSS
SAAAPTTTPSSSAVRALAMEYKSLQEEPVEGFRVKLINDDNLFEWEVAIF
GPPDTLYQGGYFKAHMKFPHDYPYSPPSIRFLTKVWHPNVYENGDLCISI
LHPPVDDPQSGELPCERWNPTQNVRTILLSVISLLNEPNTFSPANVDASV
MYRRWRDSQGKDNEYPNIIRKQALAANAEAKREGIVVPMTLEDYCLKPTR
KPTTESGLDANFYDDDFDLETEDDLPSDDDFDEDDDDDEDEDEDEDSATA
PISKNNGGSSKCKNNGLVREAAAAGADDAESADDSGKGETTASFLDH

BO17268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PE 319 CG7656-PE 1..319 23..341 1688 100 Plus
CG7656-PD 319 CG7656-PD 1..319 23..341 1688 100 Plus
CG7656-PF 317 CG7656-PF 1..317 23..341 1664 99.4 Plus
CG7656-PA 317 CG7656-PA 1..317 23..341 1664 99.4 Plus
CG40045-PA 168 CG40045-PA 10..148 67..208 433 54.2 Plus