Clone Sequence Records
BO17268.3prime Sequence
740 bp (604 high quality bases) assembled on 2006-10-13
> BO17268.3prime
ATGGTCTAGAAAGCTTGCTGTGGTCTCGCCCTTGCCGCTGTCATCAGCGG
ATTCGGCATCGTCCGCTCCGGCGGCGGCCGCCTCTCTGACCAGCCCGTTG
TTCTTGCACTTGCTGCTGCCTCCATTATTTTTGCTAATCGGCGCCGTGGC
ACTGTCCTCATCTTCATCCTCGTCCTCATCATCGTCGTCGTCCTCATCGA
AGTCATCATCAGATGGCAGATCATCCTCCGTCTCCAGATCGAAATCATCA
TCGTAGAAGTTGGCATCCAGGCCAGACTCCGTTGTGGGCTTGCGCGTGGG
CTTCAGGCAGTAGTCCTCCAGGGTCATCGGAACCACAATGCCCTCCCGCT
TGGCCTCGGCATTGGCGGCCAGTGCCTGTTTTCGTATGATGTTTGGATAC
TCATTGTCCTTACCCTGTGAGTCCCGCCATCGGCGGTACATGACCGAGGC
GTCCACGTTGGCCGGCGAGAATGTGTTCGGCTCATTGAGCAGCGATATGA
CCGACAGCAGGATGGTGCGCACATTCTGCGTGGGATTCCAGCGTTCGCAG
GGCAGCTCGCCACTCTGCGGATCATCCACCGGCGGATGTAGTATGGATAT
GCACAGATCACCGTTCTCGTAAACATTCGGATGCCAGACCTTCGTCAGGA
AGCGTATGGATGGCGGTGAATATGGATAGTCGTGCGGGAACTTCATGTGC
GCCTTGAAGTAGCCGCCCTGGTAGAGGGTGTCCGGTGGCC
BO17268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-PC | 1026 | CG7656-RC | 302..1023 | 740..19 | 3585 | 99.8 | Minus |
CG7656-PA | 954 | CG7656-RA | 560..951 | 410..19 | 1960 | 100 | Minus |
CG7656-PB | 810 | CG7656-RB | 416..807 | 410..19 | 1960 | 100 | Minus |
CG7656-PA | 954 | CG7656-RA | 236..562 | 740..414 | 1610 | 99.6 | Minus |
CG7656-PB | 810 | CG7656-RB | 141..418 | 691..414 | 1365 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RE | 1234 | CG7656-RE | 388..1109 | 740..19 | 3595 | 99.9 | Minus |
CG7656-RD | 1410 | CG7656-RD | 538..1259 | 740..19 | 3595 | 99.9 | Minus |
CG7656-RF | 2027 | CG7656-RF | 538..1253 | 740..19 | 3495 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15586205..15586603 | 19..417 | 1995 | 100 | Plus |
3L | 28110227 | 3L | 15587004..15587330 | 414..740 | 1620 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:17:17 has no hits.
BO17268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:43 Download gff for
BO17268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-PC | 302..1026 | 15..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:32 Download gff for
BO17268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 538..1262 | 15..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:30 Download gff for
BO17268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 538..1262 | 15..740 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:30 Download gff for
BO17268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15586202..15586600 | 15..414 | 99 | <- | Plus |
3L | 15587005..15587330 | 415..740 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:32 Download gff for
BO17268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15579302..15579700 | 15..414 | 99 | <- | Plus |
arm_3L | 15580105..15580430 | 415..740 | 99 | | Plus |
BO17268.5prime Sequence
738 bp (631 high quality bases) assembled on 2006-10-13
> BO17268.5prime
GAAGTTATCAGTCGACATGTCTCGGCATTTGGAAAACTTCTTTACCAACA
GAGTACGGCGACAACTGCAAGTGGCTGAACAAATGACCACCGCCGCCTCC
ACATCGCAGCATGCGACATCGTCCTCCACAATGATGGCGGGCTCTGGATC
CTTGGCGACCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCCAGCAGCT
CGGCCGTTCGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCG
GTGGAGGGATTCCGCGTCAAGCTGATCAACGACGACAATCTGTTCGAATG
GGAGGTGGCAATCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACT
TCAAGGCGCACATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCC
ATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGA
TCTGTGCATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCG
AGCTGCCCTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTG
CTGTCGGTCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAA
CGTGGACGCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGG
ACAATGAGTATCCAAACATCATACGAAAACAGGCACTGGCCGCCAATGCC
GAGGCCAAGCGGGAGGGCATTGTGGTTCCGATGACCCT
BO17268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-PC | 1026 | CG7656-RC | 1..722 | 17..738 | 3610 | 100 | Plus |
CG7656-PA | 954 | CG7656-RA | 1..562 | 83..644 | 2810 | 100 | Plus |
CG7656-PB | 810 | CG7656-RB | 141..418 | 367..644 | 1390 | 100 | Plus |
CG7656-PB | 810 | CG7656-RB | 1..141 | 83..223 | 705 | 100 | Plus |
CG7656-PA | 954 | CG7656-RA | 560..650 | 648..738 | 455 | 100 | Plus |
CG7656-PB | 810 | CG7656-RB | 416..506 | 648..738 | 455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RD | 1410 | CG7656-RD | 234..958 | 14..738 | 3625 | 100 | Plus |
CG7656-RF | 2027 | CG7656-RF | 234..952 | 14..738 | 3525 | 99.2 | Plus |
CG7656-RE | 1234 | CG7656-RE | 118..808 | 48..738 | 3440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15587004..15587634 | 644..14 | 3155 | 100 | Minus |
3L | 28110227 | 3L | 15586506..15586603 | 738..641 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:12:44 has no hits.
BO17268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:45 Download gff for
BO17268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-PC | 1..722 | 17..738 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:47 Download gff for
BO17268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 229..958 | 7..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:27 Download gff for
BO17268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 229..958 | 7..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:27 Download gff for
BO17268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15586506..15586600 | 644..738 | 100 | <- | Minus |
3L | 15587005..15587631 | 17..643 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:47 Download gff for
BO17268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15579606..15579700 | 644..738 | 100 | <- | Minus |
arm_3L | 15580105..15580731 | 17..643 | 100 | -> | Minus |
BO17268.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ634067
> BO17268.complete
GAAGTTATCAGTCGACATGTCTCGGCATTTGGAAAACTTCTTTACCAACA
GAGTACGGCGACAACTGCAAGTGGCTGAACAAATGACCACCGCCGCCTCC
ACATCGCAGCATGCGACATCGTCCTCCACAATGATGGCGGGCTCTGGATC
CTTGGCGACCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCCAGCAGCT
CGGCCGTTCGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCG
GTGGAGGGATTCCGCGTCAAGCTGATCAACGACGACAATCTGTTCGAATG
GGAGGTGGCAATCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACT
TCAAGGCGCACATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCC
ATACGCTTCCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGA
TCTGTGCATATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCG
AGCTGCCCTGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTG
CTGTCGGTCATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAA
CGTGGACGCCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGG
ACAATGAGTATCCAAACATCATACGAAAACAGGCACTGGCCGCCAATGCC
GAGGCCAAGCGGGAGGGCATTGTGGTTCCGATGACCCTGGAGGACTACTG
CCTGAAGCCCACGCGCAAGCCCACAACGGAGTCTGGCCTGGATGCCAACT
TCTACGATGATGATTTCGATCTGGAGACGGAGGATGATCTGCCATCTGAT
GATGACTTCGATGAGGACGACGACGATGATGAGGACGAGGATGAAGATGA
GGACAGTGCCACGGCGCCGATTAGCAAAAATAATGGAGGCAGCAGCAAGT
GCAAGAACAACGGGCTGGTCAGAGAGGCGGCCGCCGCCGGAGCGGACGAT
GCCGAATCCGCTGATGACAGCGGCAAGGGCGAGACCACAGCAAGCTTTCT
AGACCAT
BO17268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RE | 960 | CG7656-PE | 1..957 | 83..1039 | 4785 | 100 | Plus |
CG7656-RD | 960 | CG7656-PD | 1..957 | 83..1039 | 4785 | 100 | Plus |
CG7656-RF | 954 | CG7656-PF | 1..951 | 83..1039 | 4660 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-RD | 1410 | CG7656-RD | 234..1259 | 14..1039 | 5130 | 100 | Plus |
CG7656-RF | 2027 | CG7656-RF | 234..1253 | 14..1039 | 5005 | 99.4 | Plus |
CG7656-RE | 1234 | CG7656-RE | 118..1109 | 48..1039 | 4945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15587004..15587634 | 644..14 | 3155 | 100 | Minus |
3L | 28110227 | 3L | 15586205..15586603 | 1039..641 | 1995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:09:35 has no hits.
BO17268.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:40 Download gff for
BO17268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RC | 1..1026 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:53 Download gff for
BO17268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 27..1060 | 7..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:40 Download gff for
BO17268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 237..1259 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:40 Download gff for
BO17268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RC | 27..1060 | 7..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:32 Download gff for
BO17268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7656-RD | 237..1259 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:32 Download gff for
BO17268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15586203..15586600 | 644..1041 | 99 | <- | Minus |
3L | 15587005..15587631 | 17..643 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:40 Download gff for
BO17268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15579303..15579700 | 644..1041 | 99 | <- | Minus |
arm_3L | 15580105..15580731 | 17..643 | 100 | | Minus |
BO17268.pep Sequence
Translation from 16 to 1057
> BO17268.pep
MSRHLENFFTNRVRRQLQVAEQMTTAASTSQHATSSSTMMAGSGSLATSS
SAAAPTTTPSSSAVRALAMEYKSLQEEPVEGFRVKLINDDNLFEWEVAIF
GPPDTLYQGGYFKAHMKFPHDYPYSPPSIRFLTKVWHPNVYENGDLCISI
LHPPVDDPQSGELPCERWNPTQNVRTILLSVISLLNEPNTFSPANVDASV
MYRRWRDSQGKDNEYPNIIRKQALAANAEAKREGIVVPMTLEDYCLKPTR
KPTTESGLDANFYDDDFDLETEDDLPSDDDFDEDDDDDEDEDEDEDSATA
PISKNNGGSSKCKNNGLVREAAAAGADDAESADDSGKGETTASFLDH
BO17268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7656-PE | 319 | CG7656-PE | 1..319 | 23..341 | 1688 | 100 | Plus |
CG7656-PD | 319 | CG7656-PD | 1..319 | 23..341 | 1688 | 100 | Plus |
CG7656-PF | 317 | CG7656-PF | 1..317 | 23..341 | 1664 | 99.4 | Plus |
CG7656-PA | 317 | CG7656-PA | 1..317 | 23..341 | 1664 | 99.4 | Plus |
CG40045-PA | 168 | CG40045-PA | 10..148 | 67..208 | 433 | 54.2 | Plus |