Clone Sequence Records
BO17269.3prime Sequence
795 bp (735 high quality bases) assembled on 2006-10-13
> BO17269.3prime
ATGGTCTAGAAAGCTTGCTTGGCTAGGGGCGTGTATTGGAAGCCTGTAAA
ATGGGTTGGCCAGATTAACCCGCGCCGCCGGCAGAAACTCCGGATGTTCG
GTCAGGGTGTCCGACAATGCGCTCAGCAAAACTCTTAAAACCTTCTTTTG
CAAGTCGATGGGTATGACACCCATGTTACCCTCGCGCTCTAGAAATTCCG
TAAGCTTCTGCAGCTCCATTTGGGCCTCATCGGAGCCATGCGAAAGCGAT
TGAGCAAACATTACCTTTGCCAGTTTGTAAAGGATCTCCTCCAGGGAGTA
TTCATTGTACAAGTACTCGACAATCTTGGCCCGACCCTCATCATAGTCAT
TCAAATCTTGCTGTGCCTCGCTGTCCAAAACTTTGAGTTTGTTCCAGAAG
GTGAAGCTATCGAAGCTCTTCGCGGGCAGGACTCCTGCGGCGCCTCGCTC
GATTCCTGATTCCGAACCGGATTCGTGCACTGCTGGGAATGGCTTTTCTG
TGGTTGTGGTGGTGCTTGTTGTCGTCGTGGTCGTAGTGGATGCTGGGGGC
GTGGTAATGGCGGGACTGTGGCGCTTTAACTGATTCTGGCGAACCTCTTC
GGGGAAAATTCGATTGGCATAGGACCGCTGCAAGAACTCTATTCCCAGCC
GAATGTCCTGCAGGAACTTCAGGGCGCTCTCCCGAGTGATCACTTTCCCC
TCAACCAGTTCTTCCACGGCTTTTACCACAGCTGTTTCATCTCCAGTCCA
AAAAATATACTGGGCCATGTCGAACGAAGAGTACTGACCATTCCG
BO17269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-PE | 1671 | CG9813-RE | 894..1668 | 793..19 | 3875 | 100 | Minus |
| CG9813-PF | 1275 | CG9813-RF | 498..1272 | 793..19 | 3875 | 100 | Minus |
| CG9813-PB | 1671 | CG9813-RB | 894..1668 | 793..19 | 3875 | 100 | Minus |
| CG9813-PA | 1671 | CG9813-RA | 894..1668 | 793..19 | 3875 | 100 | Minus |
| CG9813-PC | 1275 | CG9813-RC | 498..1272 | 793..19 | 3875 | 100 | Minus |
| CG9813-PD | 1671 | CG9813-RD | 894..1668 | 793..19 | 3875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RG | 2603 | CG9813-RG | 1033..1807 | 793..19 | 3875 | 100 | Minus |
| CG9813-RD | 2570 | CG9813-RD | 1000..1774 | 793..19 | 3875 | 100 | Minus |
| CG9813-RC | 2174 | CG9813-RC | 604..1378 | 793..19 | 3875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13374447..13374781 | 357..691 | 1675 | 100 | Plus |
| 3R | 32079331 | 3R | 13374078..13374210 | 134..266 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 13373900..13374015 | 19..134 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 13377533..13377635 | 691..793 | 515 | 100 | Plus |
| 3R | 32079331 | 3R | 13374276..13374372 | 262..358 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:18:09 has no hits.
BO17269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:45 Download gff for
BO17269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-PD | 892..1671 | 15..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:40 Download gff for
BO17269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RC | 602..1383 | 14..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:36 Download gff for
BO17269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RC | 602..1383 | 14..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:36 Download gff for
BO17269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13374279..13374370 | 265..356 | 100 | <- | Plus |
| 3R | 13374447..13374780 | 357..690 | 100 | <- | Plus |
| 3R | 13377533..13377636 | 691..795 | 99 | | Plus |
| 3R | 13373895..13374015 | 14..134 | 98 | <- | Plus |
| 3R | 13374079..13374208 | 135..264 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:40 Download gff for
BO17269.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9199617..9199737 | 14..134 | 98 | <- | Plus |
| arm_3R | 9199801..9199930 | 135..264 | 100 | <- | Plus |
| arm_3R | 9200001..9200092 | 265..356 | 100 | <- | Plus |
| arm_3R | 9200169..9200502 | 357..690 | 100 | <- | Plus |
| arm_3R | 9203255..9203358 | 691..795 | 99 | | Plus |
BO17269.5prime Sequence
889 bp (785 high quality bases) assembled on 2006-10-13
> BO17269.5prime
GAAGTTATCAGTCGACATGGCGACGAGGAATCTGTTGGCCATCCTTCTTT
TGGCCAGCATCTGCATGACCCAGGCATATCCGGCTTTGTTGCCCTACATC
TACAATCCTTCCAAGCGCAGCGGTGATACGGCTTTCCCCCAAATCGAGGA
CGATGTAAGTGAACTGGACCAGCTGCGGAATGAACCGGGAGCGGTGATGG
CCAAGCGTCAGCACGATGGAAGTACAGCCCGCACCACCACTACCACCAAG
GAGAGTGTCGAGGAGGTCGCCGCTGTTCCCGAGCCAGGTGCACAACCAAA
TGCGAATATTATGCCCGACTTGGAGAGGCAGTTGGAGGTGGCGACGCCTC
TGATTTCCACCACTACAACCACTAGCACGTCGGCCACCACCACTACGGCG
ACGTCCAAGGAGGAGGGCGAAAGGTCCCAGCTGGAGGAGCCGAAGACGCA
GATCAAAACCGTAGTGGAGCCGACGGCCCATGCGAAGAACGCCAAAAGCT
TCTTGCGTAGTCCGAATGGTCAGTACTCTTCGTTCGACATGGCCCAGTAT
ATTTTTTGGACTGGAGATGAAACAGCTGTGGTAAAAGCCGTGGAAGAACT
GGTTGAGGGGAAAGTGATCACTCGGGAGAGCGCCCTGAAGTTCCTGCAGG
ACATTCGGCTGGGAATAGAGTTCTTGCAGCGGTCCTATGCCAATCGAATT
TTCCCCGAAGAGGTTCGCCAGAATCAGTTAAAGCGCCACAGTCCCGCCAT
TACCACGCCCCCAGCATCCACTACGACCACGACGACAACAAGCACCACCA
CAACCACAGAAAAGCCATTCCCAGCAGTGCACGAATCCCGGTTCGGAATC
AAGAATCGAGCCGAGCGCCGCAGGAGTCCTGGCCGCAAA
BO17269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-PF | 1275 | CG9813-RF | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG9813-PC | 1275 | CG9813-RC | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG9813-PE | 1671 | CG9813-RE | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG9813-PB | 1671 | CG9813-RB | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG9813-PA | 1671 | CG9813-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG9813-PD | 1671 | CG9813-RD | 1..471 | 17..487 | 2355 | 100 | Plus |
| CG9813-PE | 1671 | CG9813-RE | 865..1218 | 485..838 | 1770 | 100 | Plus |
| CG9813-PB | 1671 | CG9813-RB | 865..1218 | 485..838 | 1770 | 100 | Plus |
| CG9813-PA | 1671 | CG9813-RA | 865..1218 | 485..838 | 1770 | 100 | Plus |
| CG9813-PD | 1671 | CG9813-RD | 865..1218 | 485..838 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 106..975 | 16..886 | 4255 | 99.4 | Plus |
| CG9813-RF | 2179 | CG9813-RF | 111..980 | 16..886 | 4255 | 99.4 | Plus |
| CG9813-RG | 2603 | CG9813-RG | 106..577 | 16..487 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13378402..13378784 | 487..105 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 13374512..13374781 | 886..616 | 1230 | 97.8 | Minus |
| 3R | 32079331 | 3R | 13377533..13377663 | 616..486 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 13379003..13379091 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:22:27 has no hits.
BO17269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:46 Download gff for
BO17269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-PC | 1..869 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:34 Download gff for
BO17269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..980 | 9..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:46 Download gff for
BO17269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..980 | 9..886 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:46 Download gff for
BO17269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13374512..13374780 | 617..886 | 98 | <- | Minus |
| 3R | 13377533..13377661 | 488..616 | 100 | <- | Minus |
| 3R | 13378402..13378784 | 105..487 | 100 | <- | Minus |
| 3R | 13379003..13379094 | 9..104 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:34 Download gff for
BO17269.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9203255..9203383 | 488..616 | 100 | <- | Minus |
| arm_3R | 9200234..9200502 | 617..886 | 98 | <- | Minus |
| arm_3R | 9204124..9204506 | 105..487 | 100 | <- | Minus |
| arm_3R | 9204725..9204816 | 9..104 | 95 | | Minus |
BO17269.complete Sequence
1306 bp assembled on 2006-10-11
GenBank Submission: FJ634068
> BO17269.complete
GAAGTTATCAGTCGACATGGCGACGAGGAATCTGTTGGCCATCCTTCTTT
TGGCCAGCATCTGCATGACCCAGGCATATCCGGCTTTGTTGCCCTACATC
TACAATCCTTCCAAGCGCAGCGGTGATACGGCTTTCCCCCAAATCGAGGA
CGATGTAAGTGAACTGGACCAGCTGCGGAATGAACCGGGAGCGGTGATGG
CCAAGCGTCAGCACGATGGAAGTACAGCCCGCACCACCACTACCACCAAG
GAGAGTGTCGAGGAGGTCGCCGCTGTTCCCGAGCCAGGTGCACAACCAAA
TGCGAATATTATGCCCGACTTGGAGAGGCAGTTGGAGGTGGCGACGCCTC
TGATTTCCACCACTACAACCACTAGCACGTCGGCCACCACCACTACGGCG
ACGTCCAAGGAGGAGGGCGAAAGGTCCCAGCTGGAGGAGCCGAAGACGCA
GATCAAAACCGTAGTGGAGCCGACGGCCCATGCGAAGAACGCCAAAAGCT
TCTTGCGTAGTCCGAATGGTCAGTACTCTTCGTTCGACATGGCCCAGTAT
ATTTTTTGGACTGGAGATGAAACAGCTGTGGTAAAAGCCGTGGAAGAACT
GGTTGAGGGGAAAGTGATCACTCGGGAGAGCGCCCTGAAGTTCCTGCAGG
ACATTCGGCTGGGAATAGAGTTCTTGCAGCGGTCCTATGCCAATCGAATT
TTCCCCGAAGAGGTTCGCCAGAATCAGTTAAAGCGCCACAGTCCCGCCAT
TACCACGCCCCCAGCATCCACTACGACCACGACGACAACAAGCACCACCA
CAACCACAGAAAAGCCATTCCCAGCAGTGCACGAATCCGGTTCGGAATCA
GGAATCGAGCGAGGCGCCGCAGGAGTCCTGCCCGCGAAGAGCTTCGATAG
CTTCACCTTCTGGAACAAACTCAAAGTTTTGGACAGCGAGGCACAGCAAG
ATTTGAATGACTATGATGAGGGTCGGGCCAAGATTGTCGAGTACTTGTAC
AATGAATACTCCCTGGAGGAGATCCTTTACAAACTGGCAAAGGTAATGTT
TGCTCAATCGCTTTCGCATGGCTCCGATGAGGCCCAAATGGAGCTGCAGA
AGCTTACGGAATTTCTAGAGCGCGAGGGTAACATGGGTGTCATACCCATC
GACTTGCAAAAGAAGGTTTTAAGAGTTTTGCTGAGCGCATTGTCGGACAC
CCTGACCGAACATCCGGAGTTTCTGCCGGCGGCGCGGGTTAATCTGGCCA
ACCCATTTTACAGGCTTCCAATACACGCCCCTAGCCAAGCAAGCTTTCTA
GACCAT
BO17269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 1275 | CG9813-PC | 1..1272 | 17..1288 | 6360 | 100 | Plus |
| CG9813-RF | 1275 | CG9813-PF | 1..1272 | 17..1288 | 6360 | 100 | Plus |
| CG9813-RG | 1704 | CG9813-PG | 898..1701 | 485..1288 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 106..1378 | 16..1288 | 6365 | 100 | Plus |
| CG9813-RF | 2179 | CG9813-RF | 111..1383 | 16..1288 | 6365 | 100 | Plus |
| CG9813-RG | 2603 | CG9813-RG | 1004..1807 | 485..1288 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13378402..13378784 | 487..105 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 13374447..13374781 | 950..616 | 1675 | 100 | Minus |
| 3R | 32079331 | 3R | 13374078..13374210 | 1173..1041 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 13377533..13377663 | 616..486 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 13373900..13374015 | 1288..1173 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 13374276..13374372 | 1045..949 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 13379003..13379091 | 104..16 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:35:07 has no hits.
BO17269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:41 Download gff for
BO17269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 1..471 | 17..487 | 100 | -> | Plus |
| CG9813-RA | 868..1671 | 488..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:55 Download gff for
BO17269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 150..624 | 9..487 | 99 | -> | Plus |
| CG9813-RA | 1021..1826 | 488..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:14 Download gff for
BO17269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 112..1383 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:41 Download gff for
BO17269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 150..624 | 9..487 | 99 | -> | Plus |
| CG9813-RA | 1021..1826 | 488..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:13 Download gff for
BO17269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 112..1383 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:13 Download gff for
BO17269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13374079..13374208 | 1043..1172 | 100 | <- | Minus |
| 3R | 13374279..13374370 | 951..1042 | 100 | <- | Minus |
| 3R | 13373898..13374015 | 1173..1290 | 98 | <- | Minus |
| 3R | 13374447..13374780 | 617..950 | 100 | <- | Minus |
| 3R | 13377533..13377661 | 488..616 | 100 | <- | Minus |
| 3R | 13378402..13378784 | 105..487 | 100 | <- | Minus |
| 3R | 13379003..13379090 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:14 Download gff for
BO17269.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9199620..9199737 | 1173..1290 | 98 | <- | Minus |
| arm_3R | 9199801..9199930 | 1043..1172 | 100 | <- | Minus |
| arm_3R | 9200001..9200092 | 951..1042 | 100 | <- | Minus |
| arm_3R | 9200169..9200502 | 617..950 | 100 | <- | Minus |
| arm_3R | 9203255..9203383 | 488..616 | 100 | <- | Minus |
| arm_3R | 9204124..9204506 | 105..487 | 100 | <- | Minus |
| arm_3R | 9204725..9204812 | 17..104 | 100 | | Minus |
BO17269.pep Sequence
Translation from 16 to 1306
> BO17269.pep
MATRNLLAILLLASICMTQAYPALLPYIYNPSKRSGDTAFPQIEDDVSEL
DQLRNEPGAVMAKRQHDGSTARTTTTTKESVEEVAAVPEPGAQPNANIMP
DLERQLEVATPLISTTTTTSTSATTTTATSKEEGERSQLEEPKTQIKTVV
EPTAHAKNAKSFLRSPNGQYSSFDMAQYIFWTGDETAVVKAVEELVEGKV
ITRESALKFLQDIRLGIEFLQRSYANRIFPEEVRQNQLKRHSPAITTPPA
STTTTTTTSTTTTTEKPFPAVHESGSESGIERGAAGVLPAKSFDSFTFWN
KLKVLDSEAQQDLNDYDEGRAKIVEYLYNEYSLEEILYKLAKVMFAQSLS
HGSDEAQMELQKLTEFLEREGNMGVIPIDLQKKVLRVLLSALSDTLTEHP
EFLPAARVNLANPFYRLPIHAPSQASFLDH
BO17269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-PC | 424 | CG9813-PC | 1..424 | 1..424 | 2141 | 100 | Plus |
| CG9813-PF | 424 | CG9813-PF | 1..424 | 1..424 | 2141 | 100 | Plus |
| CG9813-PD | 556 | CG9813-PD | 180..556 | 69..424 | 1391 | 77.2 | Plus |
| CG9813-PA | 556 | CG9813-PA | 180..556 | 69..424 | 1391 | 77.2 | Plus |
| CG9813-PB | 556 | CG9813-PB | 180..556 | 69..424 | 1391 | 77.2 | Plus |
| CG9813-PD | 556 | CG9813-PD | 1..169 | 1..169 | 786 | 94.7 | Plus |
| CG9813-PA | 556 | CG9813-PA | 1..169 | 1..169 | 786 | 94.7 | Plus |
