Clone BO17280 Report

Search the DGRC for BO17280

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:172
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG10418-RA
Protein status:BO17280.pep:
Sequenced Size:319

Clone Sequence Records

BO17280.5prime Sequence

317 bp (317 high quality bases) assembled on 2006-10-13

> BO17280.5prime
GAAGTTATCAGTCGACATGCTCTTTTACTCCTTCTTCAAGTCGCTGGTGG
GCAAGGAAGTCGTTGTGGAGTTGAAAAACGACCTCAGCATATGTGGCACC
CTGCACTCGGTGGATCAGTACCTGAACATCAAGCTGACGGATATCAGTGT
CACAGATCCGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCA
TCCGTGGCTCCGTGGTGCGATACGTGCAGCTGCCGGGCGACGAGGTGGAC
ACCCAGCTGCTCCAGGATGCGGCGCGAAAGGAGGCTGTTGTGAGCACAAG
AGCAAGCTTTCTAGACC

BO17280.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-PA 288 CG10418-RA 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-RA 437 CG10418-RA 40..324 17..301 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12336907..12337123 85..301 1085 100 Plus
3L 28110227 3L 12336778..12336846 19..87 345 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:18:47 has no hits.

BO17280.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:56 Download gff for BO17280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-PA 1..288 17..305 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:46 Download gff for BO17280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..328 9..306 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:41 Download gff for BO17280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..328 9..306 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:41 Download gff for BO17280.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12336771..12336846 7..87 93 -> Plus
3L 12336910..12337127 88..306 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:46 Download gff for BO17280.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12329871..12329946 7..87 93 -> Plus
arm_3L 12330010..12330227 88..306 99   Plus

BO17280.3prime Sequence

317 bp (317 high quality bases) assembled on 2006-10-13

> BO17280.3prime
ATGGTCTAGAAAGCTTGCTCTTGTGCTCACAACAGCCTCCTTTCGCGCCG
CATCCTGGAGCAGCTGGGTGTCCACCTCGTCGCCCGGCAGCTGCACGTAT
CGCACCACGGAGCCACGGATGAAGCAGTTCTTGACGCTCAGCATGTGGGG
GTACTTGTCCGGATCTGTGACACTGATATCCGTCAGCTTGATGTTCAGGT
ACTGATCCACCGAGTGCAGGGTGCCACATATGCTGAGGTCGTTTTTCAAC
TCCACAACGACTTCCTTGCCCACCAGCGACTTGAAGAAGGAGTAAAAGAG
CATGTCGACTGATAACT

BO17280.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-PA 288 CG10418-RA 1..285 303..19 1425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-RA 437 CG10418-RA 40..324 303..19 1425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12336907..12337123 235..19 1085 100 Minus
3L 28110227 3L 12336778..12336846 301..233 345 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:18:34 has no hits.

BO17280.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:55 Download gff for BO17280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-PA 1..288 15..303 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:43 Download gff for BO17280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..328 14..311 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:40 Download gff for BO17280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..328 14..311 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:40 Download gff for BO17280.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12336771..12336846 233..313 93 -> Minus
3L 12336910..12337127 14..232 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:43 Download gff for BO17280.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12329871..12329946 233..313 93 -> Minus
arm_3L 12330010..12330227 14..232 99   Minus

BO17280.complete Sequence

319 bp assembled on 2006-10-11

GenBank Submission: FJ634069

> BO17280.complete
GAAGTTATCAGTCGACATGCTCTTTTACTCCTTCTTCAAGTCGCTGGTGG
GCAAGGAAGTCGTTGTGGAGTTGAAAAACGACCTCAGCATATGTGGCACC
CTGCACTCGGTGGATCAGTACCTGAACATCAAGCTGACGGATATCAGTGT
CACAGATCCGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCA
TCCGTGGCTCCGTGGTGCGATACGTGCAGCTGCCGGGCGACGAGGTGGAC
ACCCAGCTGCTCCAGGATGCGGCGCGAAAGGAGGCTGTTGTGAGCACAAG
AGCAAGCTTTCTAGACCAT

BO17280.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-RA 288 CG10418-PA 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-RA 437 CG10418-RA 40..324 17..301 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12336907..12337123 85..301 1085 100 Plus
3L 28110227 3L 12336778..12336846 19..87 345 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:49:08 has no hits.

BO17280.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:42 Download gff for BO17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 1..288 17..305 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:56 Download gff for BO17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..328 9..306 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:29 Download gff for BO17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 40..324 17..303 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:42 Download gff for BO17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 32..328 9..306 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:16 Download gff for BO17280.complete
Subject Subject Range Query Range Percent Splice Strand
CG10418-RA 40..324 17..303 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:16 Download gff for BO17280.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12336777..12336846 17..87 98 -> Plus
3L 12336910..12337123 88..303 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:29 Download gff for BO17280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12329877..12329946 17..87 98 -> Plus
arm_3L 12330010..12330223 88..303 99   Plus

BO17280.pep Sequence

Translation from 16 to 319

> BO17280.pep
MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDK
YPHMLSVKNCFIRGSVVRYVQLPGDEVDTQLLQDAARKEAVVSTRASFLD
H

BO17280.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10418-PA 95 CG10418-PA 1..95 1..95 483 100 Plus