Clone Sequence Records
BO17280.5prime Sequence
317 bp (317 high quality bases) assembled on 2006-10-13
> BO17280.5prime
GAAGTTATCAGTCGACATGCTCTTTTACTCCTTCTTCAAGTCGCTGGTGG
GCAAGGAAGTCGTTGTGGAGTTGAAAAACGACCTCAGCATATGTGGCACC
CTGCACTCGGTGGATCAGTACCTGAACATCAAGCTGACGGATATCAGTGT
CACAGATCCGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCA
TCCGTGGCTCCGTGGTGCGATACGTGCAGCTGCCGGGCGACGAGGTGGAC
ACCCAGCTGCTCCAGGATGCGGCGCGAAAGGAGGCTGTTGTGAGCACAAG
AGCAAGCTTTCTAGACC
BO17280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-PA | 288 | CG10418-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-RA | 437 | CG10418-RA | 40..324 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12336907..12337123 | 85..301 | 1085 | 100 | Plus |
3L | 28110227 | 3L | 12336778..12336846 | 19..87 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:18:47 has no hits.
BO17280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:56 Download gff for
BO17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-PA | 1..288 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:46 Download gff for
BO17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..328 | 9..306 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:41 Download gff for
BO17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..328 | 9..306 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:41 Download gff for
BO17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12336771..12336846 | 7..87 | 93 | -> | Plus |
3L | 12336910..12337127 | 88..306 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:46 Download gff for
BO17280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12329871..12329946 | 7..87 | 93 | -> | Plus |
arm_3L | 12330010..12330227 | 88..306 | 99 | | Plus |
BO17280.3prime Sequence
317 bp (317 high quality bases) assembled on 2006-10-13
> BO17280.3prime
ATGGTCTAGAAAGCTTGCTCTTGTGCTCACAACAGCCTCCTTTCGCGCCG
CATCCTGGAGCAGCTGGGTGTCCACCTCGTCGCCCGGCAGCTGCACGTAT
CGCACCACGGAGCCACGGATGAAGCAGTTCTTGACGCTCAGCATGTGGGG
GTACTTGTCCGGATCTGTGACACTGATATCCGTCAGCTTGATGTTCAGGT
ACTGATCCACCGAGTGCAGGGTGCCACATATGCTGAGGTCGTTTTTCAAC
TCCACAACGACTTCCTTGCCCACCAGCGACTTGAAGAAGGAGTAAAAGAG
CATGTCGACTGATAACT
BO17280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:13:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-PA | 288 | CG10418-RA | 1..285 | 303..19 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-RA | 437 | CG10418-RA | 40..324 | 303..19 | 1425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12336907..12337123 | 235..19 | 1085 | 100 | Minus |
3L | 28110227 | 3L | 12336778..12336846 | 301..233 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:18:34 has no hits.
BO17280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:55 Download gff for
BO17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-PA | 1..288 | 15..303 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:43 Download gff for
BO17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..328 | 14..311 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:40 Download gff for
BO17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..328 | 14..311 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:40 Download gff for
BO17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12336771..12336846 | 233..313 | 93 | -> | Minus |
3L | 12336910..12337127 | 14..232 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:43 Download gff for
BO17280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12329871..12329946 | 233..313 | 93 | -> | Minus |
arm_3L | 12330010..12330227 | 14..232 | 99 | | Minus |
BO17280.complete Sequence
319 bp assembled on 2006-10-11
GenBank Submission: FJ634069
> BO17280.complete
GAAGTTATCAGTCGACATGCTCTTTTACTCCTTCTTCAAGTCGCTGGTGG
GCAAGGAAGTCGTTGTGGAGTTGAAAAACGACCTCAGCATATGTGGCACC
CTGCACTCGGTGGATCAGTACCTGAACATCAAGCTGACGGATATCAGTGT
CACAGATCCGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCA
TCCGTGGCTCCGTGGTGCGATACGTGCAGCTGCCGGGCGACGAGGTGGAC
ACCCAGCTGCTCCAGGATGCGGCGCGAAAGGAGGCTGTTGTGAGCACAAG
AGCAAGCTTTCTAGACCAT
BO17280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-RA | 288 | CG10418-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-RA | 437 | CG10418-RA | 40..324 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12336907..12337123 | 85..301 | 1085 | 100 | Plus |
3L | 28110227 | 3L | 12336778..12336846 | 19..87 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:49:08 has no hits.
BO17280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:42 Download gff for
BO17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 1..288 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:56 Download gff for
BO17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..328 | 9..306 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:29 Download gff for
BO17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 40..324 | 17..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:42 Download gff for
BO17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 32..328 | 9..306 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:16 Download gff for
BO17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10418-RA | 40..324 | 17..303 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:16 Download gff for
BO17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12336777..12336846 | 17..87 | 98 | -> | Plus |
3L | 12336910..12337123 | 88..303 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:29 Download gff for
BO17280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12329877..12329946 | 17..87 | 98 | -> | Plus |
arm_3L | 12330010..12330223 | 88..303 | 99 | | Plus |
BO17280.pep Sequence
Translation from 16 to 319
> BO17280.pep
MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDK
YPHMLSVKNCFIRGSVVRYVQLPGDEVDTQLLQDAARKEAVVSTRASFLD
H
BO17280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10418-PA | 95 | CG10418-PA | 1..95 | 1..95 | 483 | 100 | Plus |