Clone Sequence Records
BO17282.3prime Sequence
725 bp (701 high quality bases) assembled on 2006-10-13
> BO17282.3prime
ATGGTCTAGAAAGCTTGCCATGTGGCGCTTCATGTGCAGCGCCAGGTGAT
CGGACCTCGAGAAGCAGCGATCGCAGTTGCGGCACTTGAACGGCTTGGCA
CCTGTGTGCTTGCGGTAGTGGCGGGTCAGCTCGTCGCTCCTCGCAAACCT
CCATTCACAGCCCTCCCAGGAGCACTTGTACGGCTTTTCACCTGTATGCG
TTCTTTGGTGGGCCTTCAGGTGCGAACTCTTCGTGTAGACTTTTTTGCAG
CCGAGAAATTGGCACTTGTGTATCCGCCGCTTGGCGTCCGGGCTGTGATC
GCTGTGATGCTGGCGCGGGTGGTGCGGTTTCGAGGAGCCATTCGCCGACT
TTTCCGACCGTTGCGAAAGCACCTGTTGCTGCGGCGTCGCTGTGTTGATG
CTGTTGCTGCTGGTGTTGCTGCTGCTGCTGTTGCTGTTGCTGTTGCTGCT
GCCGCTGTTGGCTGCTGCACTGAGCACGGCGGCAACATTGGCATTGCCGT
TATTCTGCATTTGGATGACCCGGGCCAGACTGATGCCAGCCGCTCCTGGC
TTCCCGTTGGCCGTCGTCAGGCGGACGATGGTGCTGCGCGGAATGTTGCT
GTGTGTTGGCTGGTCGCTGCTGCCGCTGATGCTGCTGCTGCTACTGTGGC
TGCTACTGCTGCTATTGCTGCTGTTGCTGCTACTGCTGCTGCTGCTCTTG
GGCGATTTGCTGCCGATGTTGCTGT
BO17282.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:22:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33473-PB | 1713 | luna-RB | 1004..1710 | 725..19 | 3510 | 99.8 | Minus |
| CG9895-PA | 1233 | CG9895-RA | 1015..1074 | 237..178 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| luna-RC | 8446 | CG33473-RC | 2395..3101 | 725..19 | 3520 | 99.9 | Minus |
| luna-RD | 3037 | CG33473-RD | 1824..2530 | 725..19 | 3520 | 99.9 | Minus |
| luna-RB | 3608 | CG33473-RB | 2395..3101 | 725..19 | 3520 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10989836..10990223 | 338..725 | 1925 | 99.7 | Plus |
| 2R | 25286936 | 2R | 10983301..10983476 | 19..194 | 880 | 100 | Plus |
| 2R | 25286936 | 2R | 10989624..10989775 | 188..339 | 760 | 100 | Plus |
| 3L | 28110227 | 3L | 3652713..3652884 | 193..22 | 200 | 74.4 | Minus |
Blast to na_te.dros performed 2015-02-12 00:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2468..2837 | 725..373 | 270 | 59.1 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 627..728 | 612..718 | 210 | 70.9 | Plus |
BO17282.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:58 Download gff for
BO17282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33473-PB | 1004..1713 | 16..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:58:07 Download gff for
BO17282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 2395..3107 | 13..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:07:51 Download gff for
BO17282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 2395..3107 | 13..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:07:51 Download gff for
BO17282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10983295..10983473 | 13..191 | 98 | <- | Plus |
| 2R | 10989628..10989774 | 192..338 | 100 | <- | Plus |
| 2R | 10989837..10990223 | 339..725 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:58:07 Download gff for
BO17282.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6870800..6870978 | 13..191 | 98 | <- | Plus |
| arm_2R | 6877133..6877279 | 192..338 | 100 | <- | Plus |
| arm_2R | 6877342..6877728 | 339..725 | 99 | | Plus |
BO17282.5prime Sequence
682 bp (644 high quality bases) assembled on 2006-10-13
> BO17282.5prime
GAAGTTATCAGTCGACATGGATATCCTACCGAGTGGCAACATCTTCAGCG
AGCTGGAGCGGATCTGCACCACCGGCTACTACTCGTCGCAGCCGTCGATT
GAGGATCAATGGCAACAGACCTGCTACGAACTGGAGCGCTATCTGCGGGA
TGAGCCCAAGCTGCAGAAGAAGATGCACAGCAATCTGGACAATCCGTGGG
ACATATTCTCCACACCCGCCCGCCTGCTCGAGGAGCTGAAGATCAAGGAG
CAGCACCTGGACACGATCTCGACGACCTCCTCGGTCTCGTCCAACTGCTC
GGGCACCTCCTGGGACAGCAATGGTTCCCAGGCACTGAGCTGCTCGGTGC
TGGTCAAGCAGGAGCGGATCGACGAGGAGGACGACGATGTGGGCTGTGAC
GACAAGCTGAGCGTGCTGCTCGCAGCTCCGCCCTCGGCCATCTCTCCCAA
TCCCAGCATCGGCAGTGCGGGCAACATGACGCCCACCAGCATCAGCAACA
GCAGCAGCATCAGCAGCAGCAATAGCCACAGCAATAGCAACGGCAACACC
ACCGGCAGCAGCAACATCATCGCCAGCCCGCTGAGCAGTCTGGGCAGTGG
CAGCACCATCACAGTGAGTTCCCCGCACAGTTCGGCGCCGGGCATCAAGG
TGCGCGTCGTCCAGGCCAAGAATCACCCGGGC
BO17282.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33473-PB | 1713 | luna-RB | 1..666 | 17..682 | 3255 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| luna-RC | 8446 | CG33473-RC | 1392..2057 | 17..682 | 3285 | 99.7 | Plus |
| luna-RD | 3037 | CG33473-RD | 821..1486 | 17..682 | 3285 | 99.7 | Plus |
| luna-RB | 3608 | CG33473-RB | 1392..2057 | 17..682 | 3285 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10990561..10991127 | 682..116 | 2790 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11099532..11099633 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:18:28 has no hits.
BO17282.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:04:59 Download gff for
BO17282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33473-PB | 1..666 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 03:58:13 Download gff for
BO17282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 1384..2057 | 7..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:09:59 Download gff for
BO17282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 1384..2057 | 7..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:09:59 Download gff for
BO17282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10990561..10991124 | 119..682 | 99 | <- | Minus |
| 2R | 11099532..11099641 | 7..118 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 03:58:13 Download gff for
BO17282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6878066..6878629 | 119..682 | 99 | <- | Minus |
| arm_2R | 6987037..6987146 | 7..118 | 96 | | Minus |
BO17282.complete Sequence
1744 bp assembled on 2007-11-30
GenBank Submission: FJ634070
> BO17282.complete
GAAGTTATCAGTCGACATGGATATCCTACCGAGTGGCAACATCTTCAGCG
AGCTGGAGCGGATCTGCACCACCGGCTACTACTCGTCGCAGCCGTCGATT
GAGGATCAATGGCAACAGACCTGCTACGAACTGGAGCGCTATCTGCGGGA
TGAGCCCAAGCTGCAGAAGAAGATGCACAGCAATCTGGACAATCCGTGGG
ACATATTCTCCACACCCGCCCGCCTGCTCGAGGAGCTGAAGATCAAGGAG
CAGCACCTGGACACGATCTCGACGACCTCCTCGGTCTCGTCCAACTGCTC
GGGCACCTCCTGGGACAGCAATGGTTCCCAGGCACTGAGCTGCTCGGTGC
TGGTCAAGCAGGAGCGGATCGACGAGGAGGACGACGATGTGGGCTGTGAC
GACAAGCTGAGCGTGCTGCTCGCAGCTCCGCCCTCGGCCATCTCTCCCAA
TCCCAGCATCGGCAGTGCGGGCAACATGACGCCCACCAGCATCAGCAACA
GCAGCAGCATCAGCAGCAGCAATAGCCACAGCAATAGCAACGGCAACACC
ACCGGCAGCAGCAACATCATCGCCAGCCCGCTGAGCAGTCTGGGCAGTGG
CAGCACCATCACAGTGAGTTCCCGCAACAGTTCGGCGCCGGGCATCAAGG
TGCGCGTCGTCCAGGCCAAGAATCACCCGGGCAGCAATGCGAGAATGCAC
CTGGGGCATGTCCAGGACTTTGTGTTGCCCACGCTCACGCCGCCCTCTTC
GCCAGAGTCCAACCTGCGCAGCCACAATTACGCCCAGCAGCTGGAGGCCA
ACGATTTGGCGGCACTGATACAGCAGCAGCAGCAACAGCAACAGCAACAG
CAGCAGCAGCAGCAGCAGCAGCAGCTCAATCCACAGCCCGGCAACTCCAC
ACCCGCTACAGCAATCCTGCGCTTCACCAGCCAGAGCAATCCCACAATGA
CGCAACTGCAGCAGCAGCAGCAGCAGCTGGCCGTCCAGCATTTGAGCATA
TCGCCACAGGCCCTTGGCCACAGCAACATCGGCAGCAATTCGCCCAAGAG
CAGCAGCAGCAGTAGCAGCAACAGCAGCAATAGCAGCAGTAGCAGCCACA
GTAGCAGCAGCAGCATCAGCGGCAGCAGCGACCAGCCAACACACAGCAAC
ATTCCGCGCAGCACCATCGTCCGCCTGACGACGGCCAACGGGAAGCCAGG
AGCGGCTGGCATCAGTCTGGCCCGGGTCATCCAAATGCAGAATAACGGCA
ATGCCAATGTTGCCGCCGTGCTCAGTGCAGCAGCCAACAGCGGCAGCAGC
AACAGCAACAGCAACAGCAGCAGCAGCAACACCAGCAGCAACAGCATCAA
CACAGCGACGCCGCAGCAACAGGTGCTTTCGCAACGGTCGGAAAAGTCGG
CGAATGGCTCCTCGAAACCGCACCACCCGCGCCAGCATCACAGCGATCAC
AGCCCGGACGCCAAGCGGCGGATACACAAGTGCCAATTTCTCGGCTGCAA
AAAAGTCTACACGAAGAGTTCGCACCTGAAGGCCCACCAAAGAACGCATA
CAGGTGAAAAGCCGTACAAGTGCTCCTGGGAGGGCTGTGAATGGAGGTTT
GCGAGGAGCGACGAGCTGACCCGCCACTACCGCAAGCACACAGGTGCCAA
GCCGTTCAAGTGCCGCAACTGCGATCGCTGCTTCTCGAGGTCCGATCACC
TGGCGCTGCACATGAAGCGCCACATGGCAAGCTTTCTAGACCAT
BO17282.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| luna-RC | 1713 | CG33473-PC | 1..1710 | 17..1726 | 8550 | 100 | Plus |
| luna-RD | 1713 | CG33473-PD | 1..1710 | 17..1726 | 8550 | 100 | Plus |
| luna-RB | 1713 | CG33473-PB | 1..1710 | 17..1726 | 8550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| luna-RC | 8446 | CG33473-RC | 1392..3101 | 17..1726 | 8550 | 100 | Plus |
| luna-RD | 3037 | CG33473-RD | 821..2530 | 17..1726 | 8550 | 100 | Plus |
| luna-RB | 3608 | CG33473-RB | 1392..3101 | 17..1726 | 8550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10989836..10991127 | 1407..116 | 6460 | 100 | Minus |
| 2R | 25286936 | 2R | 10983301..10983476 | 1726..1551 | 880 | 100 | Minus |
| 2R | 25286936 | 2R | 10989624..10989775 | 1557..1406 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 11099532..11099633 | 118..17 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 3652713..3652884 | 1552..1723 | 200 | 74.4 | Plus |
Blast to na_te.dros performed 2014-11-28 07:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2837 | 844..1372 | 413 | 59.5 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 627..728 | 1133..1027 | 219 | 71.8 | Minus |
BO17282.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:25 Download gff for
BO17282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 1..1713 | 17..1729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:52 Download gff for
BO17282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 371..2080 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:20 Download gff for
BO17282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 1392..3101 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:39 Download gff for
BO17282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 371..2080 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:41 Download gff for
BO17282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| luna-RB | 1392..3101 | 17..1728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:41 Download gff for
BO17282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10983298..10983473 | 1554..1728 | 98 | <- | Minus |
| 2R | 10989628..10989774 | 1407..1553 | 100 | <- | Minus |
| 2R | 10989837..10991124 | 119..1406 | 100 | <- | Minus |
| 2R | 11099532..11099633 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:20 Download gff for
BO17282.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6877133..6877279 | 1407..1553 | 100 | <- | Minus |
| arm_2R | 6870803..6870978 | 1554..1728 | 98 | <- | Minus |
| arm_2R | 6877342..6878629 | 119..1406 | 100 | <- | Minus |
| arm_2R | 6987037..6987138 | 17..118 | 100 | | Minus |
BO17282.pep Sequence
Translation from 16 to 1744
> BO17282.pep
MDILPSGNIFSELERICTTGYYSSQPSIEDQWQQTCYELERYLRDEPKLQ
KKMHSNLDNPWDIFSTPARLLEELKIKEQHLDTISTTSSVSSNCSGTSWD
SNGSQALSCSVLVKQERIDEEDDDVGCDDKLSVLLAAPPSAISPNPSIGS
AGNMTPTSISNSSSISSSNSHSNSNGNTTGSSNIIASPLSSLGSGSTITV
SSRNSSAPGIKVRVVQAKNHPGSNARMHLGHVQDFVLPTLTPPSSPESNL
RSHNYAQQLEANDLAALIQQQQQQQQQQQQQQQQQQLNPQPGNSTPATAI
LRFTSQSNPTMTQLQQQQQQLAVQHLSISPQALGHSNIGSNSPKSSSSSS
SNSSNSSSSSHSSSSSISGSSDQPTHSNIPRSTIVRLTTANGKPGAAGIS
LARVIQMQNNGNANVAAVLSAAANSGSSNSNSNSSSSNTSSNSINTATPQ
QQVLSQRSEKSANGSSKPHHPRQHHSDHSPDAKRRIHKCQFLGCKKVYTK
SSHLKAHQRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCR
NCDRCFSRSDHLALHMKRHMASFLDH
BO17282.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| luna-PC | 570 | CG33473-PC | 1..570 | 1..570 | 2953 | 100 | Plus |
| luna-PD | 570 | CG33473-PD | 1..570 | 1..570 | 2953 | 100 | Plus |
| luna-PB | 570 | CG33473-PB | 1..570 | 1..570 | 2953 | 100 | Plus |
| dar1-PB | 751 | CG12029-PB | 361..747 | 208..570 | 515 | 36 | Plus |
| CG42741-PA | 362 | CG9895-PA | 60..362 | 288..569 | 428 | 37 | Plus |
| dar1-PB | 751 | CG12029-PB | 237..534 | 157..466 | 175 | 25.4 | Plus |
