Clone Sequence Records
BO17283.3prime Sequence
868 bp (807 high quality bases) assembled on 2006-10-13
> BO17283.3prime
ATGGTCTAGAAAGCTTGCAAGGGCCTGTTCCTTGCCCGTCCACTGGGGCT
TAATTTCCAAAGGGTAAACGCGCTTACCCTCGATGACATAGACAGCTCCG
TTCTTGTCCTTCTCCAGGACATTCAGAATGCATCGAGAGACATCAGCGGC
ACTCTGCTTGTTTAGCCTATCCAGGATCCTATAGGTCTCGTCACTCGTTT
CCGGGAAGATGATCTTCTCCGTAAAGTTGGTGAACATGTCCGTCATTGTA
GCTCCAGGACAAACAGTCACAAACTTGATGCCCGAGCGTTGATAGTACTT
TTCGTTCGCCAAGCACCGGGTGAAGTTGATGATGCCAGCCTTGGTGGCTC
CGTAAACGGGAATGATGAACATTGGATCCAGACCCACCACCGAGCTCATG
TTAACCACAATGCCACCCTTGCCGCCATTATCCTTGCCCATGTAGGGCAA
TGCACTCAGTGTGGAATTGATGATTCCACCGAGATTTACCAACAGAGTCC
TCTGCACATCCTTGTCGTTAAAAATCCCGGCTACATTGACCACAATATCG
ATGTTACCGAAGGTCTTGGCTATCTCCTCATAGGTGGCTTCCACACCCTT
CTTGTTCGCCACATCCATCTTGATGATCATTACGCTTTGGGTGGGATGAG
CGGCCCTAAGTTTTACAAACTCCTCCAGATTATCCTGCAAATCAATGATG
GCCACCTTCGCTGCTCCAGCGGCCAGGAGCTGCTTGGACACCTGCAGTCC
AATGCCTCCAGCTCCACCGGTCACCACTGCATTCTTGCCGCGAAAGGACA
TCTTGATCTGGCTGATTCGTGTAGTAGTCGGTGGTATTCCTTGTGGCTTC
ATGTCGACTGATAACTTC
BO17283.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 17:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4899-PA | 837 | Pdh-RA | 1..834 | 852..19 | 4145 | 99.8 | Minus |
| CG4899-PB | 834 | Pdh-RB | 1..831 | 852..19 | 4075 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdh-RA | 945 | CG4899-RA | 17..850 | 852..19 | 4155 | 99.9 | Minus |
| Pdh-RC | 920 | CG4899-RC | 1..825 | 843..19 | 4110 | 99.9 | Minus |
| Pdh-RB | 942 | CG4899-RB | 17..847 | 852..19 | 4100 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16353680..16354082 | 307..709 | 2015 | 100 | Plus |
| 3L | 28110227 | 3L | 16353328..16353616 | 19..307 | 1445 | 100 | Plus |
| 3L | 28110227 | 3L | 16354138..16354281 | 709..852 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:36:09 has no hits.
BO17283.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:05:00 Download gff for
BO17283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4899-PA | 1..837 | 15..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:06:39 Download gff for
BO17283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RA | 7..854 | 14..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:46 Download gff for
BO17283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RA | 7..854 | 14..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:46 Download gff for
BO17283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16353324..16353615 | 14..306 | 99 | <- | Plus |
| 3L | 16353680..16354081 | 307..708 | 100 | <- | Plus |
| 3L | 16354138..16354291 | 709..861 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:06:39 Download gff for
BO17283.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16346424..16346715 | 14..306 | 99 | <- | Plus |
| arm_3L | 16346780..16347181 | 307..708 | 100 | <- | Plus |
| arm_3L | 16347238..16347391 | 709..861 | 96 | | Plus |
BO17283.complete Sequence
868 bp assembled on 2008-11-10
GenBank Submission: KX795839
> BO17283.complete
GAAGTTATCAGTCGACATGAAGCCACAAGGAATACCACCGACTACTACAC
GAATCAGCCAGACCAAGATGTCCTTTCGCGGCAAGAATGCAGTGGTGACC
GGTGGAGCTGGAGGCATTGGACTGCAGGTGTCCAAGCAGCTCCTGGCCGC
TGGAGCAGCGAAGGTGGCCATCATTGATTTGCAGGATAATCTGGAGGAGT
TTGTAAAACTTAGGGCCGCTCATCCCACCCAAAGCGTAATGATCATCAAG
ATGGATGTGGCGAACAAGAAGGGTGTGGAAGCCACCTATGAGGAGATAGC
CAAGACCTTCGGTAACATCGATATTGTGGTCAATGTAGCCGGGATTTTTA
ACGACAAGGATGTGCAGAGGACTCTGTTGGTAAATCTCGGTGGAATCATC
AATTCCACACTGAGTGCATTGCCCTACATGGGCAAGGATAATGGCGGCAA
GGGTGGCATTGTGGTTAACATGAGCTCGGTGGTGGGTCTGGATCCAATGT
TCATCATTCCCGTTTACGGAGCCACCAAGGCTGGCATCATCAACTTCACC
CGGTGCTTGGCGAACGAAAAGTACTATCAACGCTCGGGCATCAAGTTTGT
GACTGTTTGTCCTGGAGCTACAATGACGGACATGTTCACCAACTTTACGG
AGAAGATCATCTTCCCGGAAACGAGTGACGAGACCTATAGGATCCTGGAT
AGGCTAAACAAGCAGAGTGCCGCTGATGTCTCTCGATGCATTCTGAATGT
CCTGGAGAAGGACAAGAACGGAGCTGTCTATGTCATCGAGGGTAAGCGCG
TTTACCCTTTGGAAATTAAGCCCCAGTGGACGGGCAAGGAACAGGCCCTT
GCAAGCTTTCTAGACCAT
BO17283.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdh-RA | 837 | CG4899-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
| Pdh-RB | 834 | CG4899-PB | 1..831 | 17..850 | 4090 | 99.6 | Plus |
| Pdh-RC | 786 | CG4899-PC | 1..783 | 68..850 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdh-RA | 945 | CG4899-RA | 17..850 | 17..850 | 4170 | 100 | Plus |
| Pdh-RC | 920 | CG4899-RC | 1..825 | 26..850 | 4125 | 100 | Plus |
| Pdh-RB | 942 | CG4899-RB | 17..847 | 17..850 | 4090 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16353680..16354082 | 562..160 | 2015 | 100 | Minus |
| 3L | 28110227 | 3L | 16353328..16353616 | 850..562 | 1445 | 100 | Minus |
| 3L | 28110227 | 3L | 16354138..16354281 | 160..17 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:38:12 has no hits.
BO17283.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:08 Download gff for
BO17283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RA | 7..854 | 8..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:59 Download gff for
BO17283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RA | 17..850 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:31 Download gff for
BO17283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RA | 17..850 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:37 Download gff for
BO17283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RA | 17..850 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:37 Download gff for
BO17283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16353326..16353615 | 563..852 | 99 | <- | Minus |
| 3L | 16353680..16354081 | 161..562 | 100 | <- | Minus |
| 3L | 16354138..16354281 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:59 Download gff for
BO17283.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16346780..16347181 | 161..562 | 100 | <- | Minus |
| arm_3L | 16346426..16346715 | 563..852 | 99 | <- | Minus |
| arm_3L | 16347238..16347381 | 17..160 | 100 | | Minus |
BO17283.pep Sequence
Translation from 16 to 868
> BO17283.pep
MKPQGIPPTTTRISQTKMSFRGKNAVVTGGAGGIGLQVSKQLLAAGAAKV
AIIDLQDNLEEFVKLRAAHPTQSVMIIKMDVANKKGVEATYEEIAKTFGN
IDIVVNVAGIFNDKDVQRTLLVNLGGIINSTLSALPYMGKDNGGKGGIVV
NMSSVVGLDPMFIIPVYGATKAGIINFTRCLANEKYYQRSGIKFVTVCPG
ATMTDMFTNFTEKIIFPETSDETYRILDRLNKQSAADVSRCILNVLEKDK
NGAVYVIEGKRVYPLEIKPQWTGKEQALASFLDH
BO17283.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdh-PA | 278 | CG4899-PA | 1..278 | 1..278 | 1411 | 100 | Plus |
| Pdh-PB | 277 | CG4899-PB | 1..277 | 1..278 | 1394 | 99.6 | Plus |
| Pdh-PC | 261 | CG4899-PC | 1..261 | 18..278 | 1322 | 100 | Plus |
| Pdh-PD | 260 | CG4899-PD | 1..260 | 18..278 | 1305 | 99.6 | Plus |
| CG4842-PA | 259 | CG4842-PA | 1..253 | 18..271 | 501 | 39 | Plus |
